AT1G23450

PPR repeat family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004713
Physical Location & Seq
Forward (+)
8324698 .. 8326697
2000 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23450.1

Sequence Viewer

Length: 1140 bp
ATGCGAGGGGCTCAAGCTTTATACTTTCTTCGTAGAACAACGACTTTAGCTCAACATTTGTGTTCTCTTACACCGTTTATTGCGACGCCTCGTATGGATTTTAGTTCGTTTCTTGAAGAGAACCCTAGCGACCTTGTTTATACCCATAACCGTAGAATTGATGAATTGATTAAATCCGGGAACTTGTTATCTGCACATGAAGCGTTCGATGAAATGTCTGTACGAGATGTTGTTACTTATAATCTTCTTATTTCTGGGAATAGTAGATATGGGTGTTCTTTAAGAGCTATAGAACTCTACGCGGAGATGGTCTCTTGTGGTCTTAGAGAAAGTGCTTCCACGTTTCCTTCGGTTCTGAGTGTATGTAGTGATGAATTGTTCTGTAGAGAAGGGATTCAAGTTCATTGTAGGGTAATTTCTCTTGGGTTTGGATGTAATATGTTTGTTAGGTCTGCACTTGTGGGTCTTTATGCGTGTTTGAGGCTTGTTGATGTTGCTTTGAAGTTGTTTGATGAAATGCTTGACAGAAATTTAGCTGTTTGCAATTTGCTGTTGCGATGTTTTTGCCAGACTGGAGAGTCCAAGCGATTGTTTGAAGTGTACCTTAGGATGGAACTTGAAGGTGTAGCAAAAAATGGGTTAACGTATTGTTATATGATCCGTGGTTGCTCTCATGATCGGTTGGTATATGAAGGGAAGCAATTGCATTCCTTAGTGGTTAAATCTGGATGGAACATTTCTAATATATTTGTGGCTAATGTGCTTGTGGACTATTACTCTGCTTGTGGTGATTTATCCGGTTCTATGAGATCATTCAATGCTGTCCCAGAAAAGGATGTAATATCGTGGAACTCGATTGTTTCTGTGTGTGCAGATTACGGATCTGTGCTTGATTCTCTCGATTTGTTTAGCAAGATGCAGTTCTGGGGGAAGAGACCTTCTATACGGCCATTCATGTCATTTCTGAATTTCTGTAGCAGAAACAGTGATATTCAGTCCGGGAAGCAGATCCATTGCTATGTTCTCAAAATGGGTTTCGATGTTTCAAGTCTTCATGTACAGTCTGCTCTCATTGACATGTATGGGAAATGCAATGGGATTGAGAATTCTGCCTGCTTTACCAGAGTTTGCCTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28 PPR PPR_2

Protein Analysis

379

Amino Acids

42.6

Weight (kDa)

7.02

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 177 - 224 1.4e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
AasI GACNNNNNNGTC 1 cut(s) 577
AccII CGCG 1 cut(s) 302
AciI CCGC 1 cut(s) 302
AclWI GGATC 3 cut(s) 652, 889, 1003
AcoI YGGCCR 1 cut(s) 947
AcsI RAATTY 3 cut(s) 529, 967, 1105
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 3 cut(s) 222, 602, 1059
AfiI CCNNNNNNNGG 2 cut(s) 610, 832
AflIII ACRYGT 1 cut(s) 1077
AgsI TTSAA 7 cut(s) 116, 398, 502, 596, 620, 817, 1047
AluBI AGCT 4 cut(s) 17, 50, 287, 536
AluI AGCT 4 cut(s) 17, 50, 287, 536
Alw26I GTCTC 2 cut(s) 316, 928
AlwI GGATC 3 cut(s) 652, 889, 1003
AoxI GGCC 1 cut(s) 947
ApoI RAATTY 3 cut(s) 529, 967, 1105
Asp700I GAANNNNTTC 1 cut(s) 393
AsuC2I CCSGG 2 cut(s) 178, 1000
AsuHPI GGTGA 1 cut(s) 800
AxyI CCTNAGG 1 cut(s) 605
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 1043
BccI CCATC 3 cut(s) 301, 604, 723
BceAI ACGGC 1 cut(s) 962
BcgI CGANNNNNNTGC 2 cut(s) 546, 580
BcnI CCSGG 2 cut(s) 178, 1000
BcoDI GTCTC 2 cut(s) 316, 928
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 3 cut(s) 288, 382, 973
Bme1390I CCNGG 2 cut(s) 178, 1000
BmrFI CCNGG 2 cut(s) 178, 1000
BmsI GCATC 1 cut(s) 906
BpiI GAAGAC 1 cut(s) 1043
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpmI CTGGAG 1 cut(s) 594
BpuMI CCSGG 2 cut(s) 178, 1000
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 2 cut(s) 316, 928
BsaJI CCNNGG 1 cut(s) 661
BsaWI WCCGGW 1 cut(s) 797
Bsc4I CCNNNNNNNGG 2 cut(s) 610, 832
Bse1I ACTGG 1 cut(s) 577
Bse21I CCTNAGG 1 cut(s) 605
Bse3DI GCAATG 2 cut(s) 1012, 1099
BseDI CCNNGG 1 cut(s) 661
BseGI GGATG 4 cut(s) 437, 615, 734, 841
BseLI CCNNNNNNNGG 2 cut(s) 610, 832
BseMI GCAATG 2 cut(s) 1012, 1099
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 577
BsgI GTGCAG 3 cut(s) 177, 438, 891
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 1 cut(s) 949
BsiSI CCGG 3 cut(s) 177, 798, 999
BslFI GGGAC 1 cut(s) 809
BslI CCNNNNNNNGG 2 cut(s) 610, 832
BsmAI GTCTC 2 cut(s) 316, 928
BsmFI GGGAC 1 cut(s) 809
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 1 cut(s) 949
Bso31I GGTCTC 2 cut(s) 316, 928
Bsp1286I GDGCHC 1 cut(s) 13
Bsp1407I TGTACA 1 cut(s) 1057
Bsp143I GATC 5 cut(s) 657, 676, 809, 881, 1008
BspACI CCGC 1 cut(s) 302
BspANI GGCC 1 cut(s) 949
BspCNI CTCAG 1 cut(s) 348
BspFNI CGCG 1 cut(s) 302
BspHI TCATGA 1 cut(s) 673
BspPI GGATC 3 cut(s) 652, 889, 1003
BspTNI GGTCTC 2 cut(s) 316, 928
BsrDI GCAATG 2 cut(s) 1012, 1099
BsrGI TGTACA 1 cut(s) 1057
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 1 cut(s) 661
BssMI GATC 5 cut(s) 657, 676, 809, 881, 1008
BssNI GRCGYC 1 cut(s) 86
Bst4CI ACNGT 4 cut(s) 75, 152, 986, 1062
Bst6I CTCTTC 2 cut(s) 111, 926
BstACI GRCGYC 1 cut(s) 86
BstAUI TGTACA 1 cut(s) 1057
BstC8I GCNNGC 1 cut(s) 1114
BstDEI CTNAG 4 cut(s) 323, 356, 605, 712
BstDSI CCRYGG 1 cut(s) 661
BstF5I GGATG 4 cut(s) 437, 615, 734, 841
BstFNI CGCG 1 cut(s) 302
BstKTI GATC 5 cut(s) 660, 679, 812, 884, 1011
BstMAI GTCTC 2 cut(s) 316, 928
BstMBI GATC 5 cut(s) 657, 676, 809, 881, 1008
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 1081
BstSCI CCNGG 2 cut(s) 176, 998
BstSFI CTRYAG 3 cut(s) 288, 382, 973
BstUI CGCG 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 1043
BstX2I RGATCY 2 cut(s) 881, 1008
BstYI RGATCY 2 cut(s) 881, 1008
Bsu36I CCTNAGG 1 cut(s) 605
BsuRI GGCC 1 cut(s) 949
BtgI CCRYGG 1 cut(s) 661
BtgZI GCGATG 1 cut(s) 571
BtsCI GGATG 4 cut(s) 437, 615, 734, 841
BtsIMutI CAGTG 1 cut(s) 991
Cac8I GCNNGC 1 cut(s) 1114
CciI TCATGA 1 cut(s) 673
CseI GACGC 1 cut(s) 94
Csp6I GTAC 3 cut(s) 221, 601, 1058
CviAII CATG 5 cut(s) 197, 674, 955, 1055, 1078
CviJI RGCY 8 cut(s) 11, 17, 50, 287, 484, 536, 755, 949
CviKI_1 RGCY 8 cut(s) 11, 17, 50, 287, 484, 536, 755, 949
CviQI GTAC 3 cut(s) 221, 601, 1058
DdeI CTNAG 4 cut(s) 323, 356, 605, 712
DpnI GATC 5 cut(s) 659, 678, 811, 883, 1010
DpnII GATC 5 cut(s) 657, 676, 809, 881, 1008
DrdI GACNNNNNNGTC 1 cut(s) 577
DseDI GACNNNNNNGTC 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 947
Eam1104I CTCTTC 2 cut(s) 111, 926
EarI CTCTTC 2 cut(s) 111, 926
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 2 cut(s) 316, 928
Eco81I CCTNAGG 1 cut(s) 605
EcoRI GAATTC 1 cut(s) 1105
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 5 cut(s) 200, 677, 958, 1058, 1081
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 1 cut(s) 809
FatI CATG 5 cut(s) 196, 673, 954, 1054, 1077
FokI GGATG 4 cut(s) 444, 622, 741, 848
FriOI GRGCYC 1 cut(s) 13
FspBI CTAG 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 1 cut(s) 949
HapII CCGG 3 cut(s) 177, 798, 999
HgaI GACGC 1 cut(s) 94
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 5 cut(s) 200, 677, 958, 1058, 1081
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 3 cut(s) 394, 578, 893
HpaI GTTAAC 1 cut(s) 642
HpaII CCGG 3 cut(s) 177, 798, 999
HphI GGTGA 1 cut(s) 800
Hpy166II GTNNAC 3 cut(s) 601, 642, 769
Hpy188I TCNGA 2 cut(s) 357, 966
Hpy188III TCNNGA 4 cut(s) 113, 674, 726, 899
Hpy8I GTNNAC 3 cut(s) 601, 642, 769
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 5 cut(s) 357, 383, 614, 686, 948
HpyCH4III ACNGT 4 cut(s) 75, 152, 986, 1062
HpyCH4IV ACGT 2 cut(s) 341, 644
HpyCH4V TGCA 7 cut(s) 194, 455, 543, 706, 872, 919, 1092
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 4 cut(s) 323, 356, 605, 712
HpySE526I ACGT 2 cut(s) 341, 644
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 5 cut(s) 200, 677, 958, 1058, 1081
KspAI GTTAAC 1 cut(s) 642
Kzo9I GATC 5 cut(s) 657, 676, 809, 881, 1008
LweI GCATC 1 cut(s) 906
MaeI CTAG 1 cut(s) 126
MaeII ACGT 2 cut(s) 341, 644
MaeIII GTNAC 1 cut(s) 232
MalI GATC 5 cut(s) 659, 678, 811, 883, 1010
MboI GATC 5 cut(s) 657, 676, 809, 881, 1008
MboII GAAGA 5 cut(s) 20, 128, 236, 943, 1043
MfeI CAATTG 1 cut(s) 701
MflI RGATCY 2 cut(s) 881, 1008
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 9 cut(s) 156, 164, 374, 414, 529, 544, 701, 967, 1105
MlyI GAGTC 1 cut(s) 587
MnlI CCTC 2 cut(s) 99, 474
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 4 cut(s) 171, 281, 641, 720
MslI CAYNNNNRTG 2 cut(s) 1017, 1076
MspI CCGG 3 cut(s) 177, 798, 999
MspR9I CCNGG 2 cut(s) 178, 1000
MunI CAATTG 1 cut(s) 701
Mva1269I GAATGC 1 cut(s) 706
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 200
NciI CCSGG 2 cut(s) 178, 1000
NdeII GATC 5 cut(s) 657, 676, 809, 881, 1008
NlaIII CATG 5 cut(s) 200, 677, 958, 1058, 1081
NspI RCATGY 1 cut(s) 1081
PagI TCATGA 1 cut(s) 673
PciI ACATGT 1 cut(s) 1077
PcsI WCGNNNNNNNCGW 1 cut(s) 851
PctI GAATGC 1 cut(s) 706
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 394, 893
PfoI TCCNGGA 2 cut(s) 176, 998
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PscI ACATGT 1 cut(s) 1077
PsiI TTATAA 1 cut(s) 240
PsuI RGATCY 2 cut(s) 881, 1008
RsaI GTAC 3 cut(s) 222, 602, 1059
RsaNI GTAC 3 cut(s) 221, 601, 1058
RseI CAYNNNNRTG 2 cut(s) 1017, 1076
SaqAI TTAA 4 cut(s) 171, 281, 641, 720
Sau3AI GATC 5 cut(s) 657, 676, 809, 881, 1008
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 2 cut(s) 178, 1000
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 1 cut(s) 906
SfcI CTRYAG 3 cut(s) 288, 382, 973
SmiMI CAYNNNNRTG 2 cut(s) 1017, 1076
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 9 cut(s) 156, 164, 374, 414, 529, 544, 701, 967, 1105
SsiI CCGC 1 cut(s) 302
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 176, 998
TaaI ACNGT 4 cut(s) 75, 152, 986, 1062
TaiI ACGT 2 cut(s) 344, 647
TaqI TCGA 4 cut(s) 207, 854, 900, 1038
TasI AATT 9 cut(s) 156, 164, 374, 414, 529, 544, 701, 967, 1105
TatI WGTACW 1 cut(s) 1057
TfiI GAWTC 2 cut(s) 394, 893
Tru1I TTAA 4 cut(s) 171, 281, 641, 720
Tru9I TTAA 4 cut(s) 171, 281, 641, 720
TscAI CASTG 1 cut(s) 991
TspDTI ATGAA 9 cut(s) 177, 213, 225, 387, 392, 528, 705, 943, 1043
TspGWI ACGGA 2 cut(s) 650, 894
TspRI CASTG 1 cut(s) 991
XapI RAATTY 3 cut(s) 529, 967, 1105
XceI RCATGY 1 cut(s) 1081
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.