Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8498447.1

Orthogroup ID

OG0004713

Physical Location & Seq

Genomic Coordinates Forward (+)

60 .. 1637

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8498447.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

atgtatgtggggagctctctggtagacctttacttgcgtatggggcaagacaatgtagctgtgaagttgtttgatgagttgcaggagagaaacttggctgtatggaatttgttgttacgtgggttttgtgaactgggtcgagtggatgagctgtttgggatgtattataggatgaagttggatggtgtggatccaaatgggcttagttattgttattggatacgtgcatgtagcaatgggaagcttttggatgaaggaaagcagctgcattgtggtgttgtgaaggagggatggttggaatcgaatgtgtttgttgccaatgctctggtggatttgtactctgcttgtgggagtttgattgatgcaagagaagcatttgaagctattccagtggaggatgtgatttcgtggaattcgattatttgggtctataccgaaaatggtttgctgcttgatgctcttgcgttatttgctaggatgcagttttgggggaagaggccatccatccgttcatttgttgggtttttgaatttggctagtaggattcggaatattcaacttgggaagcagatacactcttatgttgtgaaatcgggttttgatcatgatgcgagttttcatattcaatctgctctgatagatatgtatgggaaatgcagtgacattgagagttcagtgttcatatatgaaaatggtcgtgatagaaatttggagtgttgcaactcattaatgacatctttgctgcactgtggtgttattgaggatgtggtggagatgtttggtttgatggttgatgagggaattggtcttgatgaagttactctttctacgacactaaaagctttatcagtatctgcttttgcaagtttaggcagctgcaaattgcttcattgttgtgcagtaaagtcaggttttgaatctgatattgctgtttcatgttcactaatcgaagcatatgcaagatgtggtcatgtcaagctttcctgccaggtttttgatgaactcccttcaccaaatgtcatctgttttacatcgattatccatggatatgcccgaaatggaatgggaggtgaatgtcttcatttgctacaggaaatggtggcaaagggtttgaaacctgataaagtgacagtgttgtgcgtgttaagtggttgcaaccattcaggtctggttgaagaagcaaaattgttgtttgattcaatggaaatgctatatggggtctccccagaccgaaagcattattcatgcatggttgatcttttaggccgggcaggtttgctacatgaagctgaagagttgctgcaacacgcacccggaaaaggtgactatgtaatgtggagctcattgttgcgaagttgtagggtgcacaagaatgagatagtgggaaggcgaacagtaaaaagtttattggagcttgagggaaaggaccctgcaattttgttgcaagcttcaaacttctattctgaaatcggcgagtttgacactgcaatgcaaatccgagaatttgcaatagcacagcaagtaacaagggacataggtcacagcctggttgaggtaaacagccacagtcaccgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28 PPR PPR_2

Protein Analysis

525

Amino Acids

58.4

Weight (kDa)

5.42

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23450 AT1G23460 AT1G23460 AT1G70500
fragaria_vesca	FvH4_4g32840 FvH4_4g32840 FvH4_4g32850
malus_domestica	MD13G1094200.v1.1 MD16G1095500.v1.1
prunus_persica	Prupe.1G251100_v2.0.a1
pyrus_communis	pycom13g08210 pycom16g08140
rosa_chinensis	RchiOBHm_Chr4g0401991 RchiOBHm_Chr4g0441851 RchiOBHm_Chr4g0441861
rosa_laevigata	RLG00000006060
rosa_multiflora	Rmu_co8498447.1_g000001 Rmu_sc0008316.1_g000007 Rmu_sc0008316.1_g000008
rosa_roxburghii	Rroxscaffold_5G00382680
rosa_rugosa	Rorug04G0336700
rosa_samantha	Rh4AG388200 Rh4AG388300 Rh4BG401800 Rh4BG401900 Rh4CG416900 Rh4CG417000 Rh4DG395200 Rh4DG395300
rosa_wichuraiana	Rw4G033510 Rw4G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1262
AccI	GTMKAC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	185, 198
AcsI	RAATTY	5 cut(s)	106, 412, 529, 706, 1502
AcuI	CTGAAG	1 cut(s)	1311
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	1319, 1552
AgsI	TTSAA	9 cut(s)	380, 529, 557, 626, 917, 1114, 1175, 1200, 1452
AjnI	CCWGG	2 cut(s)	987, 1545
AleI	CACNNNNGTG	1 cut(s)	750
Alw21I	GWGCWC	3 cut(s)	17, 1343, 1368
Alw26I	GTCTC	1 cut(s)	1225
Alw44I	GTGCAC	1 cut(s)	1364
AlwI	GGATC	2 cut(s)	185, 198
AlwNI	CAGNNNCTG	1 cut(s)	854
AoxI	GGCC	2 cut(s)	497, 1264
ApaLI	GTGCAC	1 cut(s)	1364
ApeKI	GCWGC	7 cut(s)	262, 265, 448, 742, 873, 876, 1300
ApoI	RAATTY	5 cut(s)	106, 412, 529, 706, 1502
AseI	ATTAAT	1 cut(s)	728
Asp700I	GAANNNNTTC	2 cut(s)	384, 1077
AspS9I	GGNCC	1 cut(s)	1426
AsuC2I	CCSGG	2 cut(s)	1268, 1314
AsuHPI	GGTGA	4 cut(s)	1002, 1082, 1334, 1562
AvaII	GGWCC	1 cut(s)	1426
BaeGI	GKGCMC	1 cut(s)	1368
BamHI	GGATCC	1 cut(s)	190
BanII	GRGCYC	2 cut(s)	17, 1343
BbsI	GAAGAC	1 cut(s)	1070
Bbv12I	GWGCWC	3 cut(s)	17, 1343, 1368
BbvI	GCAGC	7 cut(s)	252, 274, 435, 729, 863, 885, 1287
BccI	CCATC	5 cut(s)	176, 285, 508, 512, 781
BcgI	CGANNNNNNTGC	2 cut(s)	938, 972
BciT130I	CCWGG	2 cut(s)	989, 1547
BciVI	GTATCC	1 cut(s)	213
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	2 cut(s)	1268, 1314
BcoDI	GTCTC	1 cut(s)	1225
BfaI	CTAG	2 cut(s)	474, 537
BfmI	CTRYAG	1 cut(s)	1088
BfuAI	ACCTGC	1 cut(s)	1262
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	7 cut(s)	263, 266, 449, 743, 874, 877, 1301
BlsI	GCNGC	7 cut(s)	264, 267, 450, 744, 875, 878, 1302
Bme1390I	CCNGG	4 cut(s)	989, 1268, 1314, 1547
Bme18I	GGWCC	1 cut(s)	1426
BmgT120I	GGNCC	1 cut(s)	1426
BmiI	GGNNCC	2 cut(s)	192, 1428
BmrFI	CCNGG	4 cut(s)	989, 1268, 1314, 1547
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	4 cut(s)	352, 445, 468, 598
BmuI	ACTGGG	1 cut(s)	143
BoxI	GACNNNNGTC	1 cut(s)	1536
BpiI	GAAGAC	1 cut(s)	1070
BpuEI	CTTGAG	1 cut(s)	1436
BpuMI	CCSGG	2 cut(s)	1268, 1314
Bsa29I	ATCGAT	1 cut(s)	1034
BsaAI	YACGTR	2 cut(s)	119, 224
BsaI	GGTCTC	1 cut(s)	1225
BsaJI	CCNNGG	1 cut(s)	1042
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	1319, 1552
Bse1I	ACTGG	2 cut(s)	138, 389
Bse3DI	GCAATG	2 cut(s)	241, 1494
BseBI	CCWGG	2 cut(s)	989, 1547
BseCI	ATCGAT	1 cut(s)	1034
BseDI	CCNNGG	1 cut(s)	1042
BseLI	CCNNNNNNNGG	2 cut(s)	1319, 1552
BseMI	GCAATG	2 cut(s)	241, 1494
BseNI	ACTGG	2 cut(s)	138, 389
BseSI	GKGCMC	1 cut(s)	1368
BseXI	GCAGC	7 cut(s)	252, 274, 435, 729, 863, 885, 1287
BsgI	GTGCAG	2 cut(s)	728, 918
BshFI	GGCC	2 cut(s)	499, 1266
BshVI	ATCGAT	1 cut(s)	1034
BsiHKAI	GWGCWC	3 cut(s)	17, 1343, 1368
BsiSI	CCGG	2 cut(s)	1267, 1314
BslFI	GGGAC	1 cut(s)	1544
BslI	CCNNNNNNNGG	2 cut(s)	1319, 1552
BsmAI	GTCTC	1 cut(s)	1225
BsmFI	GGGAC	1 cut(s)	1544
BsnI	GGCC	2 cut(s)	499, 1266
Bso31I	GGTCTC	1 cut(s)	1225
Bsp1286I	GDGCHC	3 cut(s)	17, 1343, 1368
Bsp143I	GATC	3 cut(s)	190, 601, 1255
Bsp19I	CCATGG	1 cut(s)	1042
BspANI	GGCC	2 cut(s)	499, 1266
BspDI	ATCGAT	1 cut(s)	1034
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	192, 1428
BspMI	ACCTGC	1 cut(s)	1262
BspPI	GGATC	2 cut(s)	185, 198
BspTNI	GGTCTC	1 cut(s)	1225
BsrDI	GCAATG	2 cut(s)	241, 1494
BsrI	ACTGG	2 cut(s)	138, 389
BssECI	CCNNGG	1 cut(s)	1042
BssMI	GATC	3 cut(s)	190, 601, 1255
BssT1I	CCWWGG	1 cut(s)	1042
Bst2UI	CCWGG	2 cut(s)	989, 1547
Bst4CI	ACNGT	5 cut(s)	749, 1132, 1396, 1568, 1574
Bst6I	CTCTTC	2 cut(s)	488, 1287
BstBAI	YACGTR	2 cut(s)	119, 224
BstC8I	GCNNGC	1 cut(s)	1446
BstDEI	CTNAG	1 cut(s)	203
BstDSI	CCRYGG	1 cut(s)	1042
BstENI	CCTNNNNNAGG	1 cut(s)	1550
BstKTI	GATC	3 cut(s)	193, 604, 1258
BstMAI	GTCTC	1 cut(s)	1225
BstMBI	GATC	3 cut(s)	190, 601, 1255
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 371, 380, 470
BstNI	CCWGG	2 cut(s)	989, 1547
BstNSI	RCATGY	1 cut(s)	231
BstPAI	GACNNNNGTC	1 cut(s)	1536
BstSCI	CCNGG	4 cut(s)	987, 1266, 1312, 1545
BstSFI	CTRYAG	1 cut(s)	1088
BstSLI	GKGCMC	1 cut(s)	1368
BstV1I	GCAGC	7 cut(s)	252, 274, 435, 729, 863, 885, 1287
BstV2I	GAAGAC	1 cut(s)	1070
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	1034
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	499, 1266
BsuTUI	ATCGAT	1 cut(s)	1034
BtgI	CCRYGG	1 cut(s)	1042
BtsI	GCAGTG	2 cut(s)	664, 1482
BtsIMutI	CAGTG	6 cut(s)	396, 664, 681, 745, 1137, 1482
BveI	ACCTGC	1 cut(s)	1262
Cac8I	GCNNGC	1 cut(s)	1446
CaiI	CAGNNNCTG	1 cut(s)	854
CciI	TCATGA	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	1426
ClaI	ATCGAT	1 cut(s)	1034
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	8 cut(s)	228, 605, 936, 971, 1043, 1245, 1249, 1283
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	3 cut(s)	192, 603, 1257
DpnII	GATC	3 cut(s)	190, 601, 1255
Eam1104I	CTCTTC	2 cut(s)	488, 1287
EarI	CTCTTC	2 cut(s)	488, 1287
Ecl136II	GAGCTC	2 cut(s)	15, 1341
Eco130I	CCWWGG	1 cut(s)	1042
Eco24I	GRGCYC	2 cut(s)	17, 1343
Eco31I	GGTCTC	1 cut(s)	1225
Eco47I	GGWCC	1 cut(s)	1426
Eco53kI	GAGCTC	2 cut(s)	15, 1341
Eco57I	CTGAAG	1 cut(s)	1311
EcoICRI	GAGCTC	2 cut(s)	15, 1341
EcoNI	CCTNNNNNAGG	1 cut(s)	1550
EcoO109I	RGGNCCY	1 cut(s)	1426
EcoRI	GAATTC	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	987, 1545
EcoT14I	CCWWGG	1 cut(s)	1042
EcoT22I	ATGCAT	1 cut(s)	1250
EcoT38I	GRGCYC	2 cut(s)	17, 1343
ErhI	CCWWGG	1 cut(s)	1042
FaeI	CATG	8 cut(s)	231, 608, 939, 974, 1046, 1248, 1252, 1286
FalI	AAGNNNNNCTT	2 cut(s)	807, 839
FaqI	GGGAC	1 cut(s)	1544
FatI	CATG	8 cut(s)	227, 604, 935, 970, 1042, 1244, 1248, 1282
FauNDI	CATATG	1 cut(s)	955
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	7 cut(s)	263, 266, 449, 743, 874, 877, 1301
FriOI	GRGCYC	2 cut(s)	17, 1343
Fsp4HI	GCNGC	7 cut(s)	263, 266, 449, 743, 874, 877, 1301
FspBI	CTAG	2 cut(s)	474, 537
GluI	GCNGC	7 cut(s)	263, 266, 449, 743, 874, 877, 1301
HaeIII	GGCC	2 cut(s)	499, 1266
HapII	CCGG	2 cut(s)	1267, 1314
Hin1II	CATG	8 cut(s)	231, 608, 939, 974, 1046, 1248, 1252, 1286
HindIII	AAGCTT	4 cut(s)	242, 840, 977, 1446
HinfI	GANTC	4 cut(s)	299, 544, 917, 1196
HpaII	CCGG	2 cut(s)	1267, 1314
HphI	GGTGA	4 cut(s)	1002, 1082, 1334, 1562
Hpy166II	GTNNAC	5 cut(s)	25, 131, 941, 1366, 1558
Hpy188I	TCNGA	5 cut(s)	549, 636, 922, 1465, 1499
Hpy188III	TCNNGA	3 cut(s)	605, 698, 809
Hpy8I	GTNNAC	5 cut(s)	25, 131, 941, 1366, 1558
HpyAV	CCTTC	4 cut(s)	248, 277, 1017, 1380
HpyCH4III	ACNGT	5 cut(s)	749, 1132, 1396, 1568, 1574
HpyCH4IV	ACGT	2 cut(s)	118, 223
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 371, 380, 470
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	2 cut(s)	118, 223
Hsp92II	CATG	8 cut(s)	231, 608, 939, 974, 1046, 1248, 1252, 1286
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	3 cut(s)	190, 601, 1255
LmnI	GCTCC	3 cut(s)	12, 1338, 1411
Lsp1109I	GCAGC	7 cut(s)	252, 274, 435, 729, 863, 885, 1287
LweI	GCATC	4 cut(s)	352, 445, 468, 598
MaeI	CTAG	2 cut(s)	474, 537
MaeII	ACGT	2 cut(s)	118, 223
MaeIII	GTNAC	8 cut(s)	114, 659, 817, 1126, 1322, 1522, 1538, 1568
MalI	GATC	3 cut(s)	192, 603, 1257
MboI	GATC	3 cut(s)	190, 601, 1255
MboII	GAAGA	4 cut(s)	505, 1070, 1187, 1304
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	3 cut(s)	17, 1343, 1368
MluCI	AATT	9 cut(s)	106, 412, 529, 706, 801, 881, 1184, 1434, 1502
MmeI	TCCRAC	2 cut(s)	159, 276
MnlI	CCTC	8 cut(s)	280, 388, 489, 754, 790, 1061, 1411, 1546
Mph1103I	ATGCAT	1 cut(s)	1250
MroXI	GAANNNNTTC	2 cut(s)	384, 1077
MseI	TTAA	2 cut(s)	728, 1145
MslI	CAYNNNNRTG	7 cut(s)	273, 579, 750, 894, 1047, 1371, 1487
MspA1I	CMGCKG	2 cut(s)	265, 876
MspI	CCGG	2 cut(s)	1267, 1314
MspR9I	CCNGG	4 cut(s)	989, 1268, 1314, 1547
MvaI	CCWGG	2 cut(s)	989, 1547
MwoI	GCNNNNNNNGC	4 cut(s)	43, 371, 380, 470
NciI	CCSGG	2 cut(s)	1268, 1314
NcoI	CCATGG	1 cut(s)	1042
NdeI	CATATG	1 cut(s)	955
NdeII	GATC	3 cut(s)	190, 601, 1255
NlaIII	CATG	8 cut(s)	231, 608, 939, 974, 1046, 1248, 1252, 1286
NlaIV	GGNNCC	2 cut(s)	192, 1428
NmuCI	GTSAC	5 cut(s)	659, 1126, 1322, 1538, 1568
NsiI	ATGCAT	1 cut(s)	1250
NspI	RCATGY	1 cut(s)	231
OliI	CACNNNNGTG	1 cut(s)	750
PagI	TCATGA	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PdmI	GAANNNNTTC	2 cut(s)	384, 1077
PfeI	GAWTC	4 cut(s)	299, 544, 917, 1196
PkrI	GCNGC	7 cut(s)	264, 267, 450, 744, 875, 878, 1302
Ppu21I	YACGTR	2 cut(s)	119, 224
PpuMI	RGGWCCY	1 cut(s)	1426
PshAI	GACNNNNGTC	1 cut(s)	1536
PshBI	ATTAAT	1 cut(s)	728
Psp124BI	GAGCTC	2 cut(s)	17, 1343
Psp5II	RGGWCCY	1 cut(s)	1426
Psp6I	CCWGG	2 cut(s)	987, 1545
PspGI	CCWGG	2 cut(s)	987, 1545
PspN4I	GGNNCC	2 cut(s)	192, 1428
PspPI	GGNCC	1 cut(s)	1426
PspPPI	RGGWCCY	1 cut(s)	1426
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	2 cut(s)	265, 876
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	7 cut(s)	273, 579, 750, 894, 1047, 1371, 1487
SacI	GAGCTC	2 cut(s)	17, 1343
SaqAI	TTAA	2 cut(s)	728, 1145
SatI	GCNGC	7 cut(s)	263, 266, 449, 743, 874, 877, 1301
Sau3AI	GATC	3 cut(s)	190, 601, 1255
Sau96I	GGNCC	1 cut(s)	1426
ScrFI	CCNGG	4 cut(s)	989, 1268, 1314, 1547
SduI	GDGCHC	3 cut(s)	17, 1343, 1368
SfaNI	GCATC	4 cut(s)	352, 445, 468, 598
SfcI	CTRYAG	1 cut(s)	1088
SinI	GGWCC	1 cut(s)	1426
SmiMI	CAYNNNNRTG	7 cut(s)	273, 579, 750, 894, 1047, 1371, 1487
SmlI	CTYRAG	1 cut(s)	1415
SmoI	CTYRAG	1 cut(s)	1415
Sse9I	AATT	9 cut(s)	106, 412, 529, 706, 801, 881, 1184, 1434, 1502
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	2 cut(s)	474, 537
SstI	GAGCTC	2 cut(s)	17, 1343
StyD4I	CCNGG	4 cut(s)	987, 1266, 1312, 1545
StyI	CCWWGG	1 cut(s)	1042
TaaI	ACNGT	5 cut(s)	749, 1132, 1396, 1568, 1574
TaiI	ACGT	2 cut(s)	121, 226
TaqI	TCGA	5 cut(s)	139, 302, 416, 948, 1034
TaqII	GACCGA	1 cut(s)	1245
TasI	AATT	9 cut(s)	106, 412, 529, 706, 801, 881, 1184, 1434, 1502
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	4 cut(s)	299, 544, 917, 1196
Tru1I	TTAA	2 cut(s)	728, 1145
Tru9I	TTAA	2 cut(s)	728, 1145
TscAI	CASTG	6 cut(s)	396, 664, 681, 752, 1137, 1489
TseFI	GTSAC	5 cut(s)	659, 1126, 1322, 1538, 1568
TseI	GCWGC	7 cut(s)	262, 265, 448, 742, 873, 876, 1300
Tsp45I	GTSAC	5 cut(s)	659, 1126, 1322, 1538, 1568
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	6 cut(s)	396, 664, 681, 752, 1137, 1489
VneI	GTGCAC	1 cut(s)	1364
VpaK11BI	GGWCC	1 cut(s)	1426
VspI	ATTAAT	1 cut(s)	728
XagI	CCTNNNNNAGG	1 cut(s)	1550
XapI	RAATTY	5 cut(s)	106, 412, 529, 706, 1502
XceI	RCATGY	1 cut(s)	231
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	2 cut(s)	384, 1077
XspI	CTAG	2 cut(s)	474, 537
Zsp2I	ATGCAT	1 cut(s)	1250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.