Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008316.1

Orthogroup ID

OG0004713

Physical Location & Seq

Genomic Coordinates Reverse (-)

19665 .. 20042

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008316.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggaaatgctatatggggtctccccagaccgaaagcattattcatgcatggttgatcttttaggccgggcaggtttgctacatgaagctgaagagttgctgcaacacgcacccggaaaaggtgactatgtaatgtggagctcattgttgcgaagttgtagggtgcacaagaatgagatagtgggaaggcgaacagtaaaaagtttattggagcttgagggaaaggaccctgcaattttgttgcaagcttcaaacttctattctgaaatcggcgagtttgacactgcaatgcaaatccgagaatttgcaatagcacagcaagtaacaagggacataggtcacagcctggttgaggtaaacagccacagtcaccgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28 PPR PPR_2

Protein Analysis

125

Amino Acids

14.16

Weight (kDa)

6.14

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23450 AT1G23460 AT1G23460 AT1G70500
fragaria_vesca	FvH4_4g32840 FvH4_4g32840 FvH4_4g32850
malus_domestica	MD13G1094200.v1.1 MD16G1095500.v1.1
prunus_persica	Prupe.1G251100_v2.0.a1
pyrus_communis	pycom13g08210 pycom16g08140
rosa_chinensis	RchiOBHm_Chr4g0401991 RchiOBHm_Chr4g0441851 RchiOBHm_Chr4g0441861
rosa_laevigata	RLG00000006060
rosa_multiflora	Rmu_co8498447.1_g000001 Rmu_sc0008316.1_g000007 Rmu_sc0008316.1_g000008
rosa_roxburghii	Rroxscaffold_5G00382680
rosa_rugosa	Rorug04G0336700
rosa_samantha	Rh4AG388200 Rh4AG388300 Rh4BG401800 Rh4BG401900 Rh4CG416900 Rh4CG417000 Rh4DG395200 Rh4DG395300
rosa_wichuraiana	Rw4G033510 Rw4G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	119, 352
AgsI	TTSAA	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	4 cut(s)	89, 141, 214, 248
AluI	AGCT	4 cut(s)	89, 141, 214, 248
Alw21I	GWGCWC	2 cut(s)	143, 168
Alw26I	GTCTC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	64
ApaLI	GTGCAC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	226
AsuC2I	CCSGG	2 cut(s)	68, 114
AsuHPI	GGTGA	2 cut(s)	134, 362
AvaII	GGWCC	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	143
Bbv12I	GWGCWC	2 cut(s)	143, 168
BbvI	GCAGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	2 cut(s)	68, 114
BcoDI	GTCTC	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	3 cut(s)	68, 114, 347
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	3 cut(s)	68, 114, 347
BoxI	GACNNNNGTC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	68, 114
BsaI	GGTCTC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 352
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	347
BseLI	CCNNNNNNNGG	2 cut(s)	119, 352
BseMI	GCAATG	1 cut(s)	294
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	87
BshFI	GGCC	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	143, 168
BsiSI	CCGG	2 cut(s)	67, 114
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	119, 352
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	143, 168
Bsp143I	GATC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	294
BssMI	GATC	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	196, 368, 374
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	246
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	347
BstPAI	GACNNNNGTC	1 cut(s)	336
BstSCI	CCNGG	3 cut(s)	66, 112, 345
BstSLI	GKGCMC	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	226
CviAII	CATG	3 cut(s)	45, 49, 83
CviJI	RGCY	7 cut(s)	66, 89, 141, 214, 248, 345, 363
CviKI_1	RGCY	7 cut(s)	66, 89, 141, 214, 248, 345, 363
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	141
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	345
EcoT22I	ATGCAT	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	143
FaeI	CATG	3 cut(s)	48, 52, 86
FaiI	YATR	7 cut(s)	13, 15, 46, 50, 84, 129, 335
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	3 cut(s)	44, 48, 82
Fnu4HI	GCNGC	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	2 cut(s)	67, 114
Hin1II	CATG	3 cut(s)	48, 52, 86
HindIII	AAGCTT	1 cut(s)	246
HpaII	CCGG	2 cut(s)	67, 114
HphI	GGTGA	2 cut(s)	134, 362
Hpy166II	GTNNAC	2 cut(s)	166, 358
Hpy188I	TCNGA	2 cut(s)	265, 299
Hpy8I	GTNNAC	2 cut(s)	166, 358
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	3 cut(s)	196, 368, 374
HpyCH4V	TGCA	8 cut(s)	48, 103, 166, 233, 244, 287, 292, 308
Hsp92II	CATG	3 cut(s)	48, 52, 86
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	2 cut(s)	138, 211
LpnPI	CCDG	7 cut(s)	39, 57, 80, 127, 243, 332, 359
Lsp1109I	GCAGC	1 cut(s)	87
MaeIII	GTNAC	4 cut(s)	122, 322, 338, 368
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	1 cut(s)	104
MhlI	GDGCHC	2 cut(s)	143, 168
MluCI	AATT	2 cut(s)	234, 302
MnlI	CCTC	2 cut(s)	211, 346
Mph1103I	ATGCAT	1 cut(s)	50
MslI	CAYNNNNRTG	2 cut(s)	171, 287
MspI	CCGG	2 cut(s)	67, 114
MspR9I	CCNGG	3 cut(s)	68, 114, 347
MvaI	CCWGG	1 cut(s)	347
NciI	CCSGG	2 cut(s)	68, 114
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	3 cut(s)	48, 52, 86
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	3 cut(s)	122, 338, 368
NsiI	ATGCAT	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	102
PpuMI	RGGWCCY	1 cut(s)	226
PshAI	GACNNNNGTC	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
RseI	CAYNNNNRTG	2 cut(s)	171, 287
SacI	GAGCTC	1 cut(s)	143
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	3 cut(s)	68, 114, 347
SduI	GDGCHC	2 cut(s)	143, 168
SetI	ASST	8 cut(s)	76, 91, 124, 143, 216, 250, 340, 357
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	171, 287
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	234, 302
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	3 cut(s)	66, 112, 345
TaaI	ACNGT	3 cut(s)	196, 368, 374
TaqII	GACCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	234, 302
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	3 cut(s)	122, 338, 368
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	3 cut(s)	122, 338, 368
TspDTI	ATGAA	2 cut(s)	33, 99
TspRI	CASTG	1 cut(s)	289
VneI	GTGCAC	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	350
XapI	RAATTY	1 cut(s)	302
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.