pycom16g08140
ERF Family

Pectate lyase superfamily protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
5378775 .. 5381338
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g08140.9

Sequence Viewer

Length: 1311 bp
ATGAGCATGCTTCATGAGCTTGAAAGCTTTAACATAGAAGAAGACAATGAGCTGAATGTTTTCGACATCCCGACATGGAAAAGTGAACGTGGTATCAAGACTCTTGTTAACGTGGATAGCTTTGGCGCAGCTGGAGATGGAGTTTCTGATGATACTCAGGCTTTCCAGAAAGCCTGGGGTATTGCTTGCAATACAACAAATGCAGTTTTCTTGGTACCCCAAGGACGCCATTATCTAGTGAATGCTACAAAATTTCAAGGGCCATGTGCGGATAACTCGATCATCCAGATTGAAGGAACTATAGTAGCACCAGATGAGCCTAGTAAATGGGATCCGAATTTTCCACGAACATGGCTTGATTTCACTAAACTGAATGGAGTCCTTTTCCAAGGGCATGGCGTTATTGACGGCTCAGGCAGTAAATGGTGGGCCGCATCCTGCAAAACGAACAAGACAAATCCTTGCAGAGGGGCACCAACTGCATTTACTATTGATAAAAGCTCAGCTATAAAGGTAAAAGGCATCACCATCAAGAACGCCCAACAGATGAATTTTGTCATCTCTCAGTGTGACGCGGTGCGAGTTAATGCAGTACAAGTCTCGGCTCCAGGAGACAGTCCCAACACTGATGGAATCCATATCACAGCGTCTACTAATGTGATTCTCCAAGACTGCAAAATTGGAACAGGTGATGATTGCGTCTCAATTGTCAATGGTACCTCTGGAATTAAGATGAAAAGAATCTTTTGCGGACCAGGACATGGAATCAGCATCGGAAGTCTTGGGAAGGATAACTCCACTGCCATGGTCACAAAAGTGGTCTTGGATACGGCATACCTCAGGGAGACAACCAATGGCCTCAGGATTAAGACTTGGCAGGGCGGTTCTGGTTATGTTCGTGGAGTCCGTTTCCAGAATGTGAAGATGGAAAATGTATCAAACCCGATAATCATAGATCAGTTTTACTGTGATTCCCCCAAAACTTGTCAAAATCTGACATCAGCGGTGCAAATAACCCAAGTCATGTACAAGAACATTTATGGAACCACAAAGAGTGCGAAGGCCATGAAATTTGCCTGCAGTGACACAGTTCCATGCAGGAACATAGTTCTGACTGACGTCAACTTAGAGAAGGAGGATGGCCAAGTGGAAACATACTGCAACTCTGCGCAAGGCTTCGGGTATGGCATTGTGCATCCTTCTGCAGAATGTCTGAATTCCCATGACAAAGACTCCACGATCAACGGTCAGACATCTGAATCTGAGCTTGCAGATCTGACTACAGCGGATATTGTGCACACTGAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

437

Amino Acids

47.19

Weight (kDa)

5.54

Isoelectric Point (pI)

26.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1122
Acc16I TGCGCA 1 cut(s) 1170
Acc65I GGTACC 2 cut(s) 214, 716
AccB1I GGYRCC 3 cut(s) 214, 472, 716
AccB7I CCANNNNNTGG 1 cut(s) 761
AccI GTMKAC 1 cut(s) 650
AccII CGCG 1 cut(s) 575
AciI CCGC 7 cut(s) 269, 432, 575, 750, 882, 1004, 1286
AclWI GGATC 2 cut(s) 326, 339
AcoI YGGCCR 1 cut(s) 1141
AcsI RAATTY 5 cut(s) 251, 337, 550, 1070, 1216
AcyI GRCGYC 2 cut(s) 226, 1119
AfaI GTAC 4 cut(s) 216, 594, 718, 1028
AfiI CCNNNNNNNGG 2 cut(s) 467, 761
AgsI TTSAA 3 cut(s) 23, 257, 293
AjnI CCWGG 3 cut(s) 173, 607, 754
AleI CACNNNNGTG 1 cut(s) 815
AluBI AGCT 9 cut(s) 19, 27, 52, 120, 131, 501, 506, 1267, 1306
AluI AGCT 9 cut(s) 19, 27, 52, 120, 131, 501, 506, 1267, 1306
Alw21I GWGCWC 1 cut(s) 1299
Alw26I GTCTC 4 cut(s) 604, 606, 706, 839
Alw44I GTGCAC 1 cut(s) 1295
AlwI GGATC 2 cut(s) 326, 339
AoxI GGCC 5 cut(s) 260, 429, 856, 1062, 1141
ApaLI GTGCAC 1 cut(s) 1295
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 5 cut(s) 251, 337, 550, 1070, 1216
Asp700I GAANNNNTTC 1 cut(s) 59
Asp718I GGTACC 2 cut(s) 214, 716
AspLEI GCGC 2 cut(s) 128, 1171
AspS9I GGNCC 3 cut(s) 260, 429, 752
AsuHPI GGTGA 2 cut(s) 517, 701
AvaII GGWCC 1 cut(s) 752
AxyI CCTNAGG 2 cut(s) 839, 860
BaeGI GKGCMC 2 cut(s) 475, 1299
BalI TGGCCA 1 cut(s) 1143
BamHI GGATCC 1 cut(s) 331
BanI GGYRCC 3 cut(s) 214, 472, 716
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 1299
BbvI GCAGC 1 cut(s) 140
BccI CCATC 5 cut(s) 131, 536, 623, 919, 1133
BceAI ACGGC 2 cut(s) 424, 846
BciT130I CCWGG 3 cut(s) 175, 609, 756
BciVI GTATCC 1 cut(s) 820
BcoDI GTCTC 4 cut(s) 604, 606, 706, 839
BfaI CTAG 2 cut(s) 236, 321
BfmI CTRYAG 4 cut(s) 300, 1078, 1203, 1281
BfuI GTATCC 1 cut(s) 820
BglII AGATCT 1 cut(s) 1273
BisI GCNGC 2 cut(s) 129, 432
BlpI GCTNAGC 1 cut(s) 502
BlsI GCNGC 2 cut(s) 130, 433
Bme1390I CCNGG 3 cut(s) 175, 609, 756
Bme18I GGWCC 1 cut(s) 752
BmgT120I GGNCC 3 cut(s) 260, 429, 752
BmiI GGNNCC 6 cut(s) 216, 333, 474, 606, 718, 1045
BmrFI CCNGG 3 cut(s) 175, 609, 756
BmsI GCATC 4 cut(s) 443, 531, 780, 1204
BoxI GACNNNNGTC 1 cut(s) 1118
BpiI GAAGAC 1 cut(s) 48
BpmI CTGGAG 2 cut(s) 153, 591
Bpu10I CCTNAGC 1 cut(s) 412
Bpu1102I GCTNAGC 1 cut(s) 502
BsaHI GRCGYC 2 cut(s) 226, 1119
BsaJI CCNNGG 4 cut(s) 174, 220, 388, 804
BsaXI ACNNNNNCTCC 4 cut(s) 126, 156, 1217, 1247
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 761
Bse21I CCTNAGG 2 cut(s) 839, 860
BseBI CCWGG 3 cut(s) 175, 609, 756
BseDI CCNNGG 4 cut(s) 174, 220, 388, 804
BseGI GGATG 5 cut(s) 66, 282, 434, 1144, 1195
BseLI CCNNNNNNNGG 2 cut(s) 467, 761
BseMII CTCAG 8 cut(s) 170, 426, 516, 578, 853, 874, 1254, 1293
BseSI GKGCMC 2 cut(s) 475, 1299
BseXI GCAGC 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 575
BshFI GGCC 5 cut(s) 262, 431, 858, 1064, 1143
BshNI GGYRCC 3 cut(s) 214, 472, 716
BsiHKAI GWGCWC 1 cut(s) 1299
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 2 cut(s) 467, 761
BsmAI GTCTC 4 cut(s) 604, 606, 706, 839
BsmBI CGTCTC 1 cut(s) 706
BsmFI GGGAC 1 cut(s) 603
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 5 cut(s) 262, 431, 858, 1064, 1143
Bsp1286I GDGCHC 2 cut(s) 475, 1299
Bsp1407I TGTACA 1 cut(s) 1026
Bsp143I GATC 5 cut(s) 279, 331, 955, 1239, 1273
Bsp1720I GCTNAGC 1 cut(s) 502
Bsp19I CCATGG 1 cut(s) 804
BspACI CCGC 7 cut(s) 269, 432, 575, 750, 882, 1004, 1286
BspANI GGCC 5 cut(s) 262, 431, 858, 1064, 1143
BspCNI CTCAG 8 cut(s) 169, 425, 515, 577, 852, 873, 1255, 1294
BspFNI CGCG 1 cut(s) 575
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 6 cut(s) 216, 333, 474, 606, 718, 1045
BspMAI CTGCAG 2 cut(s) 1082, 1207
BspPI GGATC 2 cut(s) 326, 339
BspT107I GGYRCC 3 cut(s) 214, 472, 716
BsrGI TGTACA 1 cut(s) 1026
BssECI CCNNGG 4 cut(s) 174, 220, 388, 804
BssMI GATC 5 cut(s) 279, 331, 955, 1239, 1273
BssNI GRCGYC 2 cut(s) 226, 1119
BssT1I CCWWGG 3 cut(s) 220, 388, 804
Bst2UI CCWGG 3 cut(s) 175, 609, 756
Bst4CI ACNGT 4 cut(s) 617, 968, 1090, 1247
BstACI GRCGYC 2 cut(s) 226, 1119
BstAPI GCANNNNNTGC 1 cut(s) 479
BstAUI TGTACA 1 cut(s) 1026
BstC8I GCNNGC 4 cut(s) 8, 187, 1078, 1269
BstDEI CTNAG 9 cut(s) 156, 412, 502, 564, 839, 860, 1126, 1263, 1302
BstDSI CCRYGG 1 cut(s) 804
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 5 cut(s) 66, 282, 434, 1144, 1195
BstFNI CGCG 1 cut(s) 575
BstHHI GCGC 2 cut(s) 128, 1171
BstKTI GATC 5 cut(s) 282, 334, 958, 1242, 1276
BstMAI GTCTC 4 cut(s) 604, 606, 706, 839
BstMBI GATC 5 cut(s) 279, 331, 955, 1239, 1273
BstMWI GCNNNNNNNGC 3 cut(s) 16, 479, 1303
BstNI CCWGG 3 cut(s) 175, 609, 756
BstNSI RCATGY 1 cut(s) 10
BstPAI GACNNNNGTC 1 cut(s) 1118
BstSCI CCNGG 3 cut(s) 173, 607, 754
BstSFI CTRYAG 4 cut(s) 300, 1078, 1203, 1281
BstSLI GKGCMC 2 cut(s) 475, 1299
BstUI CGCG 1 cut(s) 575
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 2 cut(s) 331, 1273
BstXI CCANNNNNNTGG 3 cut(s) 351, 395, 805
BstYI RGATCY 2 cut(s) 331, 1273
Bsu36I CCTNAGG 2 cut(s) 839, 860
BsuI GTATCC 1 cut(s) 820
BsuRI GGCC 5 cut(s) 262, 431, 858, 1064, 1143
BtgI CCRYGG 1 cut(s) 804
BtsCI GGATG 5 cut(s) 66, 282, 434, 1144, 1195
BtsI GCAGTG 2 cut(s) 798, 1087
BtsIMutI CAGTG 5 cut(s) 572, 624, 798, 1087, 1299
Cac8I GCNNGC 4 cut(s) 8, 187, 1078, 1269
CciI TCATGA 1 cut(s) 13
CfoI GCGC 2 cut(s) 128, 1171
Cfr13I GGNCC 3 cut(s) 260, 429, 752
CseI GACGC 4 cut(s) 234, 581, 636, 688
Csp6I GTAC 4 cut(s) 215, 593, 717, 1027
CviQI GTAC 4 cut(s) 215, 593, 717, 1027
DdeI CTNAG 9 cut(s) 156, 412, 502, 564, 839, 860, 1126, 1263, 1302
DpnI GATC 5 cut(s) 281, 333, 957, 1241, 1275
DpnII GATC 5 cut(s) 279, 331, 955, 1239, 1273
EaeI YGGCCR 1 cut(s) 1141
Eco130I CCWWGG 3 cut(s) 220, 388, 804
Eco47I GGWCC 1 cut(s) 752
Eco81I CCTNAGG 2 cut(s) 839, 860
EcoNI CCTNNNNNAGG 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 1216
EcoRII CCWGG 3 cut(s) 173, 607, 754
EcoT14I CCWWGG 3 cut(s) 220, 388, 804
ErhI CCWWGG 3 cut(s) 220, 388, 804
Esp3I CGTCTC 1 cut(s) 706
FaqI GGGAC 1 cut(s) 603
FblI GTMKAC 1 cut(s) 650
Fnu4HI GCNGC 2 cut(s) 129, 432
FokI GGATG 5 cut(s) 53, 269, 421, 1151, 1182
Fsp4HI GCNGC 2 cut(s) 129, 432
FspBI CTAG 2 cut(s) 236, 321
FspI TGCGCA 1 cut(s) 1170
GlaI GCGC 2 cut(s) 127, 1170
GluI GCNGC 2 cut(s) 129, 432
GsuI CTGGAG 2 cut(s) 153, 591
HaeIII GGCC 5 cut(s) 262, 431, 858, 1064, 1143
HgaI GACGC 4 cut(s) 234, 581, 636, 688
HhaI GCGC 2 cut(s) 128, 1171
Hin1I GRCGYC 2 cut(s) 226, 1119
Hin6I GCGC 2 cut(s) 126, 1169
HinP1I GCGC 2 cut(s) 126, 1169
HincII GTYRAC 2 cut(s) 109, 1123
HindII GTYRAC 2 cut(s) 109, 1123
HindIII AAGCTT 1 cut(s) 25
HpaI GTTAAC 1 cut(s) 109
HphI GGTGA 2 cut(s) 517, 701
Hpy166II GTNNAC 5 cut(s) 86, 109, 651, 1123, 1297
Hpy188III TCNNGA 9 cut(s) 14, 70, 97, 166, 286, 532, 723, 862, 913
Hpy8I GTNNAC 5 cut(s) 86, 109, 651, 1123, 1297
HpyAV CCTTC 5 cut(s) 287, 781, 1054, 1126, 1209
HpyCH4III ACNGT 4 cut(s) 617, 968, 1090, 1247
HpyCH4IV ACGT 3 cut(s) 88, 111, 1119
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 479, 1303
HpyF3I CTNAG 9 cut(s) 156, 412, 502, 564, 839, 860, 1126, 1263, 1302
HpySE526I ACGT 3 cut(s) 88, 111, 1119
Hsp92I GRCGYC 2 cut(s) 226, 1119
HspAI GCGC 2 cut(s) 126, 1169
KpnI GGTACC 2 cut(s) 218, 720
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 5 cut(s) 279, 331, 955, 1239, 1273
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 4 cut(s) 443, 531, 780, 1204
MaeI CTAG 2 cut(s) 236, 321
MaeII ACGT 3 cut(s) 88, 111, 1119
MaeIII GTNAC 3 cut(s) 569, 808, 1082
MalI GATC 5 cut(s) 281, 333, 957, 1241, 1275
MboI GATC 5 cut(s) 279, 331, 955, 1239, 1273
MboII GAAGA 3 cut(s) 50, 53, 934
MfeI CAATTG 1 cut(s) 705
MflI RGATCY 2 cut(s) 331, 1273
MhlI GDGCHC 2 cut(s) 475, 1299
MlsI TGGCCA 1 cut(s) 1143
MluCI AATT 8 cut(s) 251, 337, 550, 678, 705, 726, 1070, 1216
MluNI TGGCCA 1 cut(s) 1143
MlyI GAGTC 4 cut(s) 94, 387, 912, 1226
MnlI CCTC 5 cut(s) 461, 730, 848, 869, 1129
Mox20I TGGCCA 1 cut(s) 1143
MroXI GAANNNNTTC 1 cut(s) 59
MscI TGGCCA 1 cut(s) 1143
MseI TTAA 5 cut(s) 30, 108, 585, 729, 867
MslI CAYNNNNRTG 3 cut(s) 349, 803, 815
Msp20I TGGCCA 1 cut(s) 1143
MspA1I CMGCKG 3 cut(s) 131, 1004, 1286
MspR9I CCNGG 3 cut(s) 175, 609, 756
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 3 cut(s) 175, 609, 756
MvnI CGCG 1 cut(s) 575
MwoI GCNNNNNNNGC 3 cut(s) 16, 479, 1303
NcoI CCATGG 1 cut(s) 804
NdeII GATC 5 cut(s) 279, 331, 955, 1239, 1273
NlaIV GGNNCC 6 cut(s) 216, 333, 474, 606, 718, 1045
NmeAIII GCCGAG 1 cut(s) 581
NmuCI GTSAC 3 cut(s) 569, 808, 1082
NsbI TGCGCA 1 cut(s) 1170
NspI RCATGY 1 cut(s) 10
OliI CACNNNNGTG 1 cut(s) 815
PaeI GCATGC 1 cut(s) 10
PagI TCATGA 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 904
PctI GAATGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 6 cut(s) 633, 661, 741, 765, 971, 1259
PflMI CCANNNNNTGG 1 cut(s) 761
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 2 cut(s) 130, 433
PleI GAGTC 4 cut(s) 94, 386, 911, 1226
PpsI GAGTC 4 cut(s) 94, 386, 911, 1226
PshAI GACNNNNGTC 1 cut(s) 1118
Psp6I CCWGG 3 cut(s) 173, 607, 754
PspGI CCWGG 3 cut(s) 173, 607, 754
PspN4I GGNNCC 6 cut(s) 216, 333, 474, 606, 718, 1045
PspPI GGNCC 3 cut(s) 260, 429, 752
PstI CTGCAG 2 cut(s) 1082, 1207
PsuI RGATCY 2 cut(s) 331, 1273
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 4 cut(s) 216, 594, 718, 1028
RsaNI GTAC 4 cut(s) 215, 593, 717, 1027
RseI CAYNNNNRTG 3 cut(s) 349, 803, 815
SaqAI TTAA 5 cut(s) 30, 108, 585, 729, 867
SatI GCNGC 2 cut(s) 129, 432
Sau3AI GATC 5 cut(s) 279, 331, 955, 1239, 1273
Sau96I GGNCC 3 cut(s) 260, 429, 752
SchI GAGTC 4 cut(s) 94, 387, 912, 1226
ScrFI CCNGG 3 cut(s) 175, 609, 756
SduI GDGCHC 2 cut(s) 475, 1299
SfaNI GCATC 4 cut(s) 443, 531, 780, 1204
SfcI CTRYAG 4 cut(s) 300, 1078, 1203, 1281
SinI GGWCC 1 cut(s) 752
SmiMI CAYNNNNRTG 3 cut(s) 349, 803, 815
SphI GCATGC 1 cut(s) 10
Sse9I AATT 8 cut(s) 251, 337, 550, 678, 705, 726, 1070, 1216
SsiI CCGC 7 cut(s) 269, 432, 575, 750, 882, 1004, 1286
SspMI CTAG 2 cut(s) 236, 321
StyD4I CCNGG 3 cut(s) 173, 607, 754
StyI CCWWGG 3 cut(s) 220, 388, 804
TaaI ACNGT 4 cut(s) 617, 968, 1090, 1247
TaiI ACGT 3 cut(s) 91, 114, 1122
TaqI TCGA 2 cut(s) 63, 278
TasI AATT 8 cut(s) 251, 337, 550, 678, 705, 726, 1070, 1216
TatI WGTACW 2 cut(s) 592, 1026
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 6 cut(s) 633, 661, 741, 765, 971, 1259
Tru1I TTAA 5 cut(s) 30, 108, 585, 729, 867
Tru9I TTAA 5 cut(s) 30, 108, 585, 729, 867
TscAI CASTG 5 cut(s) 572, 631, 805, 1087, 1306
TseFI GTSAC 3 cut(s) 569, 808, 1082
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 3 cut(s) 569, 808, 1082
TspDTI ATGAA 3 cut(s) 563, 749, 1082
TspGWI ACGGA 1 cut(s) 896
TspRI CASTG 5 cut(s) 572, 631, 805, 1087, 1306
Van91I CCANNNNNTGG 1 cut(s) 761
VneI GTGCAC 1 cut(s) 1295
VpaK11BI GGWCC 1 cut(s) 752
XagI CCTNNNNNAGG 1 cut(s) 465
XapI RAATTY 5 cut(s) 251, 337, 550, 1070, 1216
XceI RCATGY 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 650
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 2 cut(s) 236, 321
ZraI GACGTC 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.