Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008316.1

Orthogroup ID

OG0004713

Physical Location & Seq

Genomic Coordinates Reverse (-)

16361 .. 19091

Gene Structure 2731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008316.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

atgggtaaattcttcgtgatttcttttcttggtatgctgatagcagtttatggagttgcaggaaacattgtttatgatgacattggcattcttgatgagcttgaaagctttgacatagaagaagacaatgaggtggacatctttgagattccgtcatggacaagtgaacgtggtagcaaggttcttgttaatgtggatagctttggtgctactggagatggagtttctgatgatactcaggcttttgtaaaagcttgggatattgcatgcaatacaacaaaagctgttttcctggtaccccaaggacgccgctatctagtaaatgcaacaagatttgaagggccatgtgcagatggcttagtcatccagattgagggaacaatcgtagcaccggatgatcctaacaactgggatccaaaatttccacgaacatggcttgacttctataaattgaatggagtacttttccaagggcatggagttattgatggatcaggcagtaaatggagtgctcctacagcatttactattgataggagctcagctataaagataaaagggctcaccatccagaacagccaacaaatgcattttactatctctcagagtgactccgtacgagtttatgcagtccaagtctcggctccaggagacagtcctaacactgatggaatccatatcactgcatctactaatgtggttctccaagactgcaaaattggaacaggagatgactgcatctcaattgtcaatgctacatcaaatattaagatgaagagaatcttttgcggaccaggacatggagtcagcatcggaagtctagggaaggacaactccagcggcatagtgacaaaaattgtcttggatacagcatacctcaaggagactaccaatggcctccgcattaagacttggcagggaggttctggttatgttcgtggggtccgtttccaaaacgtaaggatggaagatgtagcaaatcccataatcatagatcagttttactgtgactcccccaaagcttgtcaaaatcagacatcagctgtggaaataagccaaatcatgtatcggaacatctcgggaaccacaacgagtaagaatgccatgaagtttgcctgcagtgacacagttccatgcagcaacctagtcctcagtaatgtcaacctggagaagaaggacggcactgtggagacatattgcaactctgctgaaggcttcgggactggagttgtgcatccatcagcagactgtctgaattctcatgacaaagacttgacaattatcaatcagcctacagaagttaaagatgcagatctcagcatagaagatattgtgcatactgaactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

449

Amino Acids

48.65

Weight (kDa)

4.74

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23450 AT1G23460 AT1G23460 AT1G70500
fragaria_vesca	FvH4_4g32840 FvH4_4g32840 FvH4_4g32850
malus_domestica	MD13G1094200.v1.1 MD16G1095500.v1.1
prunus_persica	Prupe.1G251100_v2.0.a1
pyrus_communis	pycom13g08210 pycom16g08140
rosa_chinensis	RchiOBHm_Chr4g0401991 RchiOBHm_Chr4g0441851 RchiOBHm_Chr4g0441861
rosa_laevigata	RLG00000006060
rosa_multiflora	Rmu_co8498447.1_g000001 Rmu_sc0008316.1_g000007 Rmu_sc0008316.1_g000008
rosa_roxburghii	Rroxscaffold_5G00382680
rosa_rugosa	Rorug04G0336700
rosa_samantha	Rh4AG388200 Rh4AG388300 Rh4BG401800 Rh4BG401900 Rh4CG416900 Rh4CG417000 Rh4DG395200 Rh4DG395300
rosa_wichuraiana	Rw4G033510 Rw4G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	800
AciI	CCGC	4 cut(s)	310, 789, 840, 901
AclWI	GGATC	4 cut(s)	392, 407, 420, 499
AcsI	RAATTY	3 cut(s)	8, 419, 1255
AcuI	CTGAAG	1 cut(s)	1230
AcyI	GRCGYC	1 cut(s)	307
AfaI	GTAC	3 cut(s)	297, 462, 618
AfiI	CCNNNNNNNGG	3 cut(s)	373, 640, 800
AgsI	TTSAA	3 cut(s)	104, 338, 454
AhdI	GACNNNNNGTC	1 cut(s)	803
AjnI	CCWGG	4 cut(s)	291, 646, 793, 1164
AluBI	AGCT	9 cut(s)	100, 108, 201, 254, 284, 540, 545, 1022, 1043
AluI	AGCT	9 cut(s)	100, 108, 201, 254, 284, 540, 545, 1022, 1043
Alw21I	GWGCWC	2 cut(s)	514, 542
Alw26I	GTCTC	4 cut(s)	643, 645, 878, 1184
AlwI	GGATC	4 cut(s)	392, 407, 420, 499
Ama87I	CYCGRG	1 cut(s)	1078
AoxI	GGCC	2 cut(s)	341, 895
ApeKI	GCWGC	1 cut(s)	1137
ApoI	RAATTY	3 cut(s)	8, 419, 1255
Asp718I	GGTACC	1 cut(s)	295
AspS9I	GGNCC	3 cut(s)	341, 791, 943
AsuHPI	GGTGA	1 cut(s)	556
AvaI	CYCGRG	1 cut(s)	1078
AvaII	GGWCC	2 cut(s)	791, 943
BamHI	GGATCC	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	542, 564
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	2 cut(s)	514, 542
BbvI	GCAGC	1 cut(s)	1149
BccI	CCATC	7 cut(s)	212, 347, 482, 575, 662, 958, 1246
BceAI	ACGGC	1 cut(s)	1195
BciT130I	CCWGG	4 cut(s)	293, 648, 795, 1166
BciVI	GTATCC	1 cut(s)	859
BcoDI	GTCTC	4 cut(s)	643, 645, 878, 1184
BfaI	CTAG	3 cut(s)	317, 821, 1145
BfmI	CTRYAG	3 cut(s)	516, 1117, 1293
BfuI	GTATCC	1 cut(s)	859
BglII	AGATCT	1 cut(s)	1312
BisI	GCNGC	3 cut(s)	310, 841, 1138
BlpI	GCTNAGC	1 cut(s)	541
BlsI	GCNGC	3 cut(s)	311, 842, 1139
BmcAI	AGTACT	1 cut(s)	462
Bme1390I	CCNGG	4 cut(s)	293, 648, 795, 1166
Bme18I	GGWCC	2 cut(s)	791, 943
BmeRI	GACNNNNNGTC	1 cut(s)	803
BmeT110I	CYCGRG	1 cut(s)	1078
BmgT120I	GGNCC	3 cut(s)	341, 791, 943
BmiI	GGNNCC	5 cut(s)	297, 414, 645, 944, 1084
BmrFI	CCNGG	4 cut(s)	293, 648, 795, 1166
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	5 cut(s)	695, 747, 819, 1243, 1297
BmuI	ACTGGG	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	5 cut(s)	234, 630, 820, 1187, 1245
Bpu1102I	GCTNAGC	1 cut(s)	541
BpuEI	CTTGAG	1 cut(s)	863
BsaBI	GATNNNNATC	1 cut(s)	1311
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	301, 469
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 995, 1025
Bsc4I	CCNNNNNNNGG	3 cut(s)	373, 640, 800
Bse1I	ACTGG	3 cut(s)	217, 413, 1228
Bse8I	GATNNNNATC	1 cut(s)	1311
BseBI	CCWGG	4 cut(s)	293, 648, 795, 1166
BseDI	CCNNGG	2 cut(s)	301, 469
BseGI	GGATG	5 cut(s)	363, 400, 567, 969, 1234
BseJI	GATNNNNATC	1 cut(s)	1311
BseLI	CCNNNNNNNGG	3 cut(s)	373, 640, 800
BseMII	CTCAG	5 cut(s)	251, 555, 617, 1165, 1330
BseNI	ACTGG	3 cut(s)	217, 413, 1228
BseXI	GCAGC	1 cut(s)	1149
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	343, 897
BshNI	GGYRCC	1 cut(s)	295
BsiHKAI	GWGCWC	2 cut(s)	514, 542
BsiHKCI	CYCGRG	1 cut(s)	1078
BsiSI	CCGG	1 cut(s)	392
BsiWI	CGTACG	1 cut(s)	616
BslFI	GGGAC	1 cut(s)	1234
BslI	CCNNNNNNNGG	3 cut(s)	373, 640, 800
BsmAI	GTCTC	4 cut(s)	643, 645, 878, 1184
BsmFI	GGGAC	1 cut(s)	1234
BsmI	GAATGC	2 cut(s)	87, 1105
BsnI	GGCC	2 cut(s)	343, 897
BsoBI	CYCGRG	1 cut(s)	1078
Bsp1286I	GDGCHC	3 cut(s)	514, 542, 564
Bsp143I	GATC	5 cut(s)	397, 412, 491, 994, 1312
Bsp1720I	GCTNAGC	1 cut(s)	541
BspACI	CCGC	4 cut(s)	310, 789, 840, 901
BspANI	GGCC	2 cut(s)	343, 897
BspCNI	CTCAG	5 cut(s)	250, 554, 616, 1164, 1329
BspHI	TCATGA	1 cut(s)	1261
BspLI	GGNNCC	5 cut(s)	297, 414, 645, 944, 1084
BspMAI	CTGCAG	1 cut(s)	1121
BspPI	GGATC	4 cut(s)	392, 407, 420, 499
BspT107I	GGYRCC	1 cut(s)	295
BsrI	ACTGG	3 cut(s)	217, 413, 1228
BssECI	CCNNGG	2 cut(s)	301, 469
BssMI	GATC	5 cut(s)	397, 412, 491, 994, 1312
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	301, 469
Bst2UI	CCWGG	4 cut(s)	293, 648, 795, 1166
Bst4CI	ACNGT	5 cut(s)	656, 1007, 1129, 1186, 1250
Bst6I	CTCTTC	1 cut(s)	770
BstACI	GRCGYC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	268, 1117
BstDEI	CTNAG	6 cut(s)	237, 358, 541, 603, 1151, 1316
BstF5I	GGATG	5 cut(s)	363, 400, 567, 969, 1234
BstKTI	GATC	5 cut(s)	400, 415, 494, 997, 1315
BstMAI	GTCTC	4 cut(s)	643, 645, 878, 1184
BstMBI	GATC	5 cut(s)	397, 412, 491, 994, 1312
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNI	CCWGG	4 cut(s)	293, 648, 795, 1166
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	4 cut(s)	291, 646, 793, 1164
BstSFI	CTRYAG	3 cut(s)	516, 1117, 1293
BstV1I	GCAGC	1 cut(s)	1149
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	412, 1312
BstXI	CCANNNNNNTGG	2 cut(s)	432, 476
BstYI	RGATCY	2 cut(s)	412, 1312
BsuI	GTATCC	1 cut(s)	859
BsuRI	GGCC	2 cut(s)	343, 897
BtsCI	GGATG	5 cut(s)	363, 400, 567, 969, 1234
BtsI	GCAGTG	2 cut(s)	681, 1126
BtsIMutI	CAGTG	4 cut(s)	663, 681, 1126, 1182
Cac8I	GCNNGC	2 cut(s)	268, 1117
CciI	TCATGA	1 cut(s)	1261
Cfr13I	GGNCC	3 cut(s)	341, 791, 943
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	3 cut(s)	296, 461, 617
CviQI	GTAC	3 cut(s)	296, 461, 617
DdeI	CTNAG	6 cut(s)	237, 358, 541, 603, 1151, 1316
DpnI	GATC	5 cut(s)	399, 414, 493, 996, 1314
DpnII	GATC	5 cut(s)	397, 412, 491, 994, 1312
DriI	GACNNNNNGTC	1 cut(s)	803
Eam1104I	CTCTTC	1 cut(s)	770
Eam1105I	GACNNNNNGTC	1 cut(s)	803
EarI	CTCTTC	1 cut(s)	770
Ecl136II	GAGCTC	1 cut(s)	540
Eco130I	CCWWGG	2 cut(s)	301, 469
Eco24I	GRGCYC	2 cut(s)	542, 564
Eco47I	GGWCC	2 cut(s)	791, 943
Eco53kI	GAGCTC	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	1230
Eco88I	CYCGRG	1 cut(s)	1078
EcoICRI	GAGCTC	1 cut(s)	540
EcoRI	GAATTC	1 cut(s)	1255
EcoRII	CCWGG	4 cut(s)	291, 646, 793, 1164
EcoT14I	CCWWGG	2 cut(s)	301, 469
EcoT22I	ATGCAT	1 cut(s)	591
EcoT38I	GRGCYC	2 cut(s)	542, 564
ErhI	CCWWGG	2 cut(s)	301, 469
FalI	AAGNNNNNCTT	2 cut(s)	767, 799
FaqI	GGGAC	1 cut(s)	1234
Fnu4HI	GCNGC	3 cut(s)	310, 841, 1138
FokI	GGATG	5 cut(s)	350, 407, 554, 976, 1221
FriOI	GRGCYC	2 cut(s)	542, 564
Fsp4HI	GCNGC	3 cut(s)	310, 841, 1138
FspBI	CTAG	3 cut(s)	317, 821, 1145
GluI	GCNGC	3 cut(s)	310, 841, 1138
GsuI	CTGGAG	5 cut(s)	234, 630, 820, 1187, 1245
HaeIII	GGCC	2 cut(s)	343, 897
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	1 cut(s)	315
Hin1I	GRCGYC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	1162
HindII	GTYRAC	1 cut(s)	1162
HindIII	AAGCTT	3 cut(s)	106, 252, 1020
HinfI	GANTC	6 cut(s)	148, 611, 672, 780, 804, 1010
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	3 cut(s)	136, 167, 1162
Hpy188I	TCNGA	7 cut(s)	229, 606, 815, 1035, 1071, 1254, 1349
Hpy188III	TCNNGA	7 cut(s)	16, 92, 367, 571, 1080, 1219, 1262
Hpy8I	GTNNAC	3 cut(s)	136, 167, 1162
HpyAV	CCTTC	4 cut(s)	332, 820, 1168, 1205
HpyCH4III	ACNGT	5 cut(s)	656, 1007, 1129, 1186, 1250
HpyCH4IV	ACGT	2 cut(s)	169, 957
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	6 cut(s)	237, 358, 541, 603, 1151, 1316
HpySE526I	ACGT	2 cut(s)	169, 957
Hsp92I	GRCGYC	1 cut(s)	307
KpnI	GGTACC	1 cut(s)	299
Kzo9I	GATC	5 cut(s)	397, 412, 491, 994, 1312
LmnI	GCTCC	3 cut(s)	517, 537, 649
Lsp1109I	GCAGC	1 cut(s)	1149
LweI	GCATC	5 cut(s)	695, 747, 819, 1243, 1297
MaeI	CTAG	3 cut(s)	317, 821, 1145
MaeII	ACGT	2 cut(s)	169, 957
MaeIII	GTNAC	4 cut(s)	608, 847, 1007, 1121
MalI	GATC	5 cut(s)	399, 414, 493, 996, 1314
MboI	GATC	5 cut(s)	397, 412, 491, 994, 1312
MboII	GAAGA	7 cut(s)	4, 131, 134, 787, 980, 1183, 1337
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	2 cut(s)	412, 1312
MhlI	GDGCHC	3 cut(s)	514, 542, 564
MluCI	AATT	8 cut(s)	8, 419, 449, 717, 744, 855, 1255, 1278
MlyI	GAGTC	3 cut(s)	605, 813, 1004
MnlI	CCTC	6 cut(s)	124, 367, 887, 908, 914, 1160
Mph1103I	ATGCAT	1 cut(s)	591
MseI	TTAA	4 cut(s)	189, 768, 906, 1302
MslI	CAYNNNNRTG	1 cut(s)	430
MspA1I	CMGCKG	2 cut(s)	840, 1043
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	4 cut(s)	293, 648, 795, 1166
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	2 cut(s)	87, 1105
MvaI	CCWGG	4 cut(s)	293, 648, 795, 1166
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeII	GATC	5 cut(s)	397, 412, 491, 994, 1312
NlaIV	GGNNCC	5 cut(s)	297, 414, 645, 944, 1084
NmeAIII	GCCGAG	1 cut(s)	620
NmuCI	GTSAC	4 cut(s)	608, 847, 1007, 1121
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	1 cut(s)	270
PaeI	GCATGC	1 cut(s)	270
PagI	TCATGA	1 cut(s)	1261
PcsI	WCGNNNNNNNCGW	1 cut(s)	943
PctI	GAATGC	2 cut(s)	87, 1105
PfeI	GAWTC	3 cut(s)	148, 672, 780
Pfl23II	CGTACG	1 cut(s)	616
PflMI	CCANNNNNTGG	1 cut(s)	800
PfoI	TCCNGGA	1 cut(s)	646
PkrI	GCNGC	3 cut(s)	311, 842, 1139
PleI	GAGTC	3 cut(s)	605, 812, 1004
PpsI	GAGTC	3 cut(s)	605, 812, 1004
Psp124BI	GAGCTC	1 cut(s)	542
Psp6I	CCWGG	4 cut(s)	291, 646, 793, 1164
PspGI	CCWGG	4 cut(s)	291, 646, 793, 1164
PspLI	CGTACG	1 cut(s)	616
PspN4I	GGNNCC	5 cut(s)	297, 414, 645, 944, 1084
PspPI	GGNCC	3 cut(s)	341, 791, 943
PstI	CTGCAG	1 cut(s)	1121
PsuI	RGATCY	2 cut(s)	412, 1312
PvuII	CAGCTG	1 cut(s)	1043
RsaI	GTAC	3 cut(s)	297, 462, 618
RsaNI	GTAC	3 cut(s)	296, 461, 617
RseI	CAYNNNNRTG	1 cut(s)	430
SacI	GAGCTC	1 cut(s)	542
SaqAI	TTAA	4 cut(s)	189, 768, 906, 1302
SatI	GCNGC	3 cut(s)	310, 841, 1138
Sau3AI	GATC	5 cut(s)	397, 412, 491, 994, 1312
Sau96I	GGNCC	3 cut(s)	341, 791, 943
ScaI	AGTACT	1 cut(s)	462
SchI	GAGTC	3 cut(s)	605, 813, 1004
ScrFI	CCNGG	4 cut(s)	293, 648, 795, 1166
SduI	GDGCHC	3 cut(s)	514, 542, 564
SfaNI	GCATC	5 cut(s)	695, 747, 819, 1243, 1297
SfcI	CTRYAG	3 cut(s)	516, 1117, 1293
SinI	GGWCC	2 cut(s)	791, 943
SmiMI	CAYNNNNRTG	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	8 cut(s)	8, 419, 449, 717, 744, 855, 1255, 1278
SsiI	CCGC	4 cut(s)	310, 789, 840, 901
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	3 cut(s)	317, 821, 1145
SstI	GAGCTC	1 cut(s)	542
StyD4I	CCNGG	4 cut(s)	291, 646, 793, 1164
StyI	CCWWGG	2 cut(s)	301, 469
TaaI	ACNGT	5 cut(s)	656, 1007, 1129, 1186, 1250
TaiI	ACGT	2 cut(s)	172, 960
TasI	AATT	8 cut(s)	8, 419, 449, 717, 744, 855, 1255, 1278
TatI	WGTACW	1 cut(s)	460
TauI	GCSGC	2 cut(s)	312, 843
TfiI	GAWTC	3 cut(s)	148, 672, 780
Tru1I	TTAA	4 cut(s)	189, 768, 906, 1302
Tru9I	TTAA	4 cut(s)	189, 768, 906, 1302
TscAI	CASTG	4 cut(s)	670, 688, 1126, 1189
TseFI	GTSAC	4 cut(s)	608, 847, 1007, 1121
TseI	GCWGC	1 cut(s)	1137
Tsp45I	GTSAC	4 cut(s)	608, 847, 1007, 1121
TspDTI	ATGAA	2 cut(s)	788, 1121
TspGWI	ACGGA	3 cut(s)	141, 604, 935
TspRI	CASTG	4 cut(s)	670, 688, 1126, 1189
Van91I	CCANNNNNTGG	1 cut(s)	800
VpaK11BI	GGWCC	2 cut(s)	791, 943
XapI	RAATTY	3 cut(s)	8, 419, 1255
XceI	RCATGY	1 cut(s)	270
XspI	CTAG	3 cut(s)	317, 821, 1145
ZrmI	AGTACT	1 cut(s)	462
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.