RLG00000006060

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004713
Physical Location & Seq
Forward (+)
3979264 .. 3984572
5309 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006060

Sequence Viewer

Length: 3279 bp
ATGTTGATTTTACCGCGGAGAGCTCGATGGTCATTTCGAGTTCTTCGATCATTGTCTTCCTCTGTCAGCATACCCGTTGTAGCTTCATCAACCTCATCTCTGCGTTTCGGGTCGTATTTTGAACCCAATACCAGTGACCAAGTATACTCCAACAACCGGAGAATGGACTACTTTATAAAATCTGGGGACTTGAACTATGCACTCAACGTGTTCGATGAAATGCCTCAGTATGATGTTGTGACATATAACTTGCTTATTTCAGGGCATGGTCGATTTGGGCATCGAGAACAGGCTTTTCGGCTCTATACTCATATGGTTTCACAAGGAATTAGAGAAAGTGAGTCGACGTTTTCTTCTGTGTTGGGGATTTGTACTGATGCAGGGCTTTATAGGGAAGGGGTTCAAGTTCATTGCAGGGCGGTGTCTCTTGGGTTTAGCTTGAATATGTATGTGGGGAGCTCCCTGGTAGACCTTTACTTGCACATGGGGCAAGACAATGTAGCTGTGAAGTTGTTTGATGAGCTGCAGGAGAGAAACTTGGCTGTATGGAATTTGTTGTTACGTGGGTTTTGTGAACTGGGTCGAGTGGATGAGCTGTTTGGGATGTATTATAGGATGAAGTTGGATGGTGTGGATCCAAATGGGCTTAGTTATTGTTATTGGATACGTGCATGTAGTAATGGGAAGCTTTTGGATGAAGGAAAGCAGCTGCATTGTGGTGTTGTGAAGGAGGGATGGTTGGAATCGAATGTGTTTGTTGCCAATGCTGTGGTGGATTTGTACTCTGCTTGTGGGAGTTTGATTGATGCAAGAGAAGCATTTGAAGCTATTCCAGTGGAGGATGTGATTTCGTGGAATTCGATTATTTGGGTCTATACCGAAAATGGTTTGCTGCTTGATGCTCTTGAGTTATTTGCTAGGATGCAGTTTTGGGGGAAGAGGCCATCCATCCGTTCATTTGTTGGGTTTTTGAATTTGGCTAGTAGGATTCGGAATATTCAACTTGGGAAGCAGATACACTCTTATGTTGTGAAATCTGGTTTTGATCATGATGCGAGTTTTCATATTCAATCTGCTCTGATAGATATGTATGGGAAATGCAGTGACATTGAGAGTTTAGTGTGGATATATGAAAATGGTCGTGATAGAAATTTGGAGTGCTGCAACTCATTAATGACATCTTTGCTGCACTGTGGCGTTATTGAGGATGTGGTGGAGATGTTTGGTTTGATGGTTGATGAGGGAATTGGTCTTGATGAAGTTACTCTTTCTACGACACTAAAAGCTTTATCAATATCTGCTTTTGCAAGTTTAGGCAGCTGCAAATTGCTGCACTGTTGTGCAGTAAAGTCAGGTTTTGAATCTGATATTGCTGTTTCGTGTTCACTAATCGAAGCATATGCAAGATGTGGTCATGTCAAGCTTTCCTGCCAGGTTTTTGATGAACTCCCTTCACCAAATGTCATCTGTTTTACATCGATTATCCGTGGATATGCCCGAAATGGAATGGGAGGTGAATGTCTTCATTTGCTACAGGAAATGGTGGCAAAGGGTTTGAAACCTGATAAAGTGACAGTGTTGTGCGTGTTAAGTGGTTGCAACCATTCAGGTCTGGTTGAAGAAGCAAAATTGTTGTTTGATTCAATGGAAATGCTATATGGGGTCTCCCCGGACCGAAAGCATTATTCATGCATGGTTGATCTTTTAGGCCGGGCAGGTTTGCTACATGAAGCTGAAGAGTTGCTGCAACACGCACCCGGAAAAGGTGACTATGTAATGTGGAGCTCATTGTTGCGAAGTTGTAGGGTGCACAAGAATGAAATAGTGGGAAGGCAAACAGTAAAAAGTTTATTGGAGCTTGAGGGAAAGGACCCTGCAATTTTGTTGCAAGCTTCAAACTTCTATTCTGAAATCGCTCACACATTGTTCATTGGCCCCAGTGCCTCAGGAAACATTGTCTATGATGACATTGGCATTCTTGATGAGCTTGAAAGCTTTGACATAGAAGAAGACAATGAGGTGGACGTCTTTGAGATTCCGTCATGGACAAGTGAACGTGGTAGCAAGGTTCTTGTTAATGTGGATAGCTTTGGTGCTAATGGAGATGGAGTTTCTGATGATACTCAGGCTTTTGTAAAAGCTTGGGACATTGCATGCAACACAACAAAAGCTGTTTTCCTGGTACCCCAAGGACGCCGCTATCTAGTAAATGCAACAAGATTTGAAGGGCCATGTGCAGATAGCTTAGTCATCCAGATTGAGGGAACAATCGTAGCACCTGATGATCCTAACAACTGGGATCCAAAATTTCCACGAACATGGCTTGACTTCTATAAATTGAATGGAGTACTTTTCCAAGGGCATGGAGTTATTGATGGATCAGGCAGTAAATGGTGGGCTTCATCCTGCAAAAAGAATAAGACAAATCCTTGCAGGAGTGCTCCTACAGCATTTACTATTGATAGGAGCTCAGCTATAAAGATAAAAGGGCTCACCATCCAGAACAGCCAACAAATGCATTTTACTATCTCTCAGAGCGACTCCGTACGAGTTTATGCAGTCCAAGTCTCGGCTCCAGGAGACAGTCCTAACACTGATGGAATCCATATCACTGCATCTACTAATGTGGTTCTGCAAGACTGCAAAATTGGAACAGGAGATGACTGCATCTCAATTGTCAATGCTACATCAAATATTAAGATGAAGAGAATCTTTTGCGGACCAGGACATGGAGTCAGCATCGGAAGTCTAGGGAAGGACAACTCCAGCGGCATAGTGACAAAAATTGTCTTGGATACAGCATACCTCAAGGAGACTACCAATGGCCTCCGCATTAAGACTTGGCAGGGAGGTTCTGGTTATGTTCGTGGGGTCCGTTTCCAAAACGTAAGGATGGAAGATGTAGCAAATCCCATAATCATAGATCAGTTTTACTGTGACTCCCCCAAAGCTTGTCAAAATCAGACATCAGCTGTGCAAATAAGCCAAATCATGTATCGGAACATCTCGGGAACCACAACGAGTAAGAATGCCATGAAGTTTGCCTGCAGTGACACAGTTCCATGCAGCAACCTAGTCCTGAGTAATGTCAACCTGGAGAAGAAGGACGGCACTGTGGAGACATATTGCAACTCTGCCGAAGGCTTCGGGACTGGAGTTGTGCATCCATCAGCAGATTGTCTGAATTCTCATGACAAAGACTTGACAATCATCAATCAGCCTACAGAAGTTAAAGATGCAGATCTTAGCATAGAAGATATTGTGCATACTGAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28 PPR PPR_2

Protein Analysis

1093

Amino Acids

120.51

Weight (kDa)

5.38

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 78 - 122 8.4e-09 PPR repeat family
PPR_2 PF13041 179 - 226 4.2e-07 PPR repeat family
PPR_2 PF13041 281 - 322 6.5e-06 PPR repeat family
PPR_2 PF13041 486 - 533 5.3e-10 PPR repeat family
PPR PF01535 490 - 519 8.2e-06 PPR repeat
Glyco_hydro_28 PF00295 721 - 1045 4.5e-91 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AatII GACGTC 1 cut(s) 2028
Acc36I ACCTGC 1 cut(s) 1706
Acc65I GGTACC 1 cut(s) 2182
AccB1I GGYRCC 1 cut(s) 2182
AccB7I CCANNNNNTGG 1 cut(s) 2729
AccI GTMKAC 3 cut(s) 144, 344, 468
AccII CGCG 1 cut(s) 16
AciI CCGC 7 cut(s) 14, 16, 419, 2197, 2718, 2769, 2830
AclWI GGATC 6 cut(s) 629, 642, 2279, 2294, 2307, 2386
AcsI RAATTY 6 cut(s) 550, 856, 973, 1150, 2306, 3184
AcuI CTGAAG 1 cut(s) 1755
AcyI GRCGYC 2 cut(s) 2025, 2194
AfaI GTAC 5 cut(s) 373, 782, 2184, 2349, 2547
AfiI CCNNNNNNNGG 6 cut(s) 156, 163, 1763, 2260, 2569, 2729
AflIII ACRYGT 1 cut(s) 207
AhdI GACNNNNNGTC 1 cut(s) 2732
AjnI CCWGG 6 cut(s) 462, 1431, 2178, 2575, 2722, 3093
AleI CACNNNNGTG 1 cut(s) 1338
Alw21I GWGCWC 6 cut(s) 25, 461, 1787, 1812, 2443, 2471
Alw26I GTCTC 6 cut(s) 429, 1669, 2572, 2574, 2807, 3113
Alw44I GTGCAC 1 cut(s) 1808
AlwI GGATC 6 cut(s) 629, 642, 2279, 2294, 2307, 2386
Ama87I CYCGRG 1 cut(s) 3007
AoxI GGCC 5 cut(s) 941, 1708, 1933, 2228, 2824
ApaLI GTGCAC 1 cut(s) 1808
ApoI RAATTY 6 cut(s) 550, 856, 973, 1150, 2306, 3184
AseI ATTAAT 1 cut(s) 1172
Asp700I GAANNNNTTC 3 cut(s) 399, 828, 1521
Asp718I GGTACC 1 cut(s) 2182
AspS9I GGNCC 6 cut(s) 1672, 1870, 1934, 2228, 2720, 2872
AsuC2I CCSGG 3 cut(s) 1670, 1712, 1758
AsuHPI GGTGA 4 cut(s) 1446, 1526, 1778, 2485
AvaI CYCGRG 1 cut(s) 3007
AvaII GGWCC 4 cut(s) 1672, 1870, 2720, 2872
AxyI CCTNAGG 1 cut(s) 1945
BaeGI GKGCMC 1 cut(s) 1812
BamHI GGATCC 2 cut(s) 634, 2299
BanI GGYRCC 1 cut(s) 2182
BanII GRGCYC 5 cut(s) 25, 461, 1787, 2471, 2493
BbsI GAAGAC 3 cut(s) 48, 1514, 2016
Bbv12I GWGCWC 6 cut(s) 25, 461, 1787, 1812, 2443, 2471
BceAI ACGGC 1 cut(s) 3124
BcgI CGANNNNNNTGC 2 cut(s) 1382, 1416
BciT130I CCWGG 6 cut(s) 464, 1433, 2180, 2577, 2724, 3095
BciVI GTATCC 2 cut(s) 657, 2788
BclI TGATCA 1 cut(s) 1045
BcnI CCSGG 3 cut(s) 1670, 1712, 1758
BcoDI GTCTC 6 cut(s) 429, 1669, 2572, 2574, 2807, 3113
BfaI CTAG 5 cut(s) 918, 981, 2204, 2750, 3074
BfmI CTRYAG 5 cut(s) 524, 1532, 2445, 3046, 3222
BfuAI ACCTGC 1 cut(s) 1706
BfuI GTATCC 2 cut(s) 657, 2788
BglII AGATCT 1 cut(s) 3241
BlpI GCTNAGC 1 cut(s) 2470
BmcAI AGTACT 1 cut(s) 2349
Bme1390I CCNGG 9 cut(s) 464, 1433, 1670, 1712, 1758, 2180, 2577, 2724, 3095
Bme18I GGWCC 4 cut(s) 1672, 1870, 2720, 2872
BmeRI GACNNNNNGTC 1 cut(s) 2732
BmeT110I CYCGRG 1 cut(s) 3007
BmgT120I GGNCC 6 cut(s) 1672, 1870, 1934, 2228, 2720, 2872
BmiI GGNNCC 8 cut(s) 636, 1872, 1936, 2184, 2301, 2574, 2873, 3013
BmrFI CCNGG 9 cut(s) 464, 1433, 1670, 1712, 1758, 2180, 2577, 2724, 3095
BmrI ACTGGG 3 cut(s) 587, 1932, 2305
BmuI ACTGGG 3 cut(s) 587, 1932, 2305
BpiI GAAGAC 3 cut(s) 48, 1514, 2016
BpmI CTGGAG 4 cut(s) 2559, 2749, 3116, 3174
Bpu1102I GCTNAGC 1 cut(s) 2470
BpuEI CTTGAG 3 cut(s) 926, 1880, 2792
BpuMI CCSGG 3 cut(s) 1670, 1712, 1758
Bsa29I ATCGAT 1 cut(s) 1478
BsaAI YACGTR 2 cut(s) 563, 668
BsaBI GATNNNNATC 1 cut(s) 3240
BsaHI GRCGYC 2 cut(s) 2025, 2194
BsaI GGTCTC 1 cut(s) 1669
BsaJI CCNNGG 6 cut(s) 14, 462, 1486, 1668, 2188, 2356
BsaWI WCCGGW 1 cut(s) 156
BsaXI ACNNNNNCTCC 6 cut(s) 722, 752, 2094, 2124, 2924, 2954
Bsc4I CCNNNNNNNGG 6 cut(s) 156, 163, 1763, 2260, 2569, 2729
Bse1I ACTGG 6 cut(s) 132, 582, 833, 1938, 2300, 3157
Bse21I CCTNAGG 1 cut(s) 1945
Bse3DI GCAATG 2 cut(s) 409, 2148
Bse8I GATNNNNATC 1 cut(s) 3240
BseBI CCWGG 6 cut(s) 464, 1433, 2180, 2577, 2724, 3095
BseCI ATCGAT 1 cut(s) 1478
BseDI CCNNGG 6 cut(s) 14, 462, 1486, 1668, 2188, 2356
BseJI GATNNNNATC 1 cut(s) 3240
BseLI CCNNNNNNNGG 6 cut(s) 156, 163, 1763, 2260, 2569, 2729
BseMI GCAATG 2 cut(s) 409, 2148
BseMII CTCAG 6 cut(s) 239, 1959, 2138, 2484, 2546, 3071
BseNI ACTGG 6 cut(s) 132, 582, 833, 1938, 2300, 3157
BseSI GKGCMC 1 cut(s) 1812
BsgI GTGCAG 4 cut(s) 1172, 1316, 1362, 2256
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 5 cut(s) 943, 1710, 1935, 2230, 2826
BshNI GGYRCC 1 cut(s) 2182
BshVI ATCGAT 1 cut(s) 1478
BsiHKAI GWGCWC 6 cut(s) 25, 461, 1787, 1812, 2443, 2471
BsiHKCI CYCGRG 1 cut(s) 3007
BsiSI CCGG 4 cut(s) 157, 1670, 1711, 1758
BsiWI CGTACG 1 cut(s) 2545
BslFI GGGAC 3 cut(s) 200, 2159, 3163
BslI CCNNNNNNNGG 6 cut(s) 156, 163, 1763, 2260, 2569, 2729
BsmAI GTCTC 6 cut(s) 429, 1669, 2572, 2574, 2807, 3113
BsmFI GGGAC 3 cut(s) 200, 2159, 3163
BsmI GAATGC 2 cut(s) 1974, 3034
BsnI GGCC 5 cut(s) 943, 1710, 1935, 2230, 2826
Bso31I GGTCTC 1 cut(s) 1669
BsoBI CYCGRG 1 cut(s) 3007
Bsp1286I GDGCHC 7 cut(s) 25, 461, 1787, 1812, 2443, 2471, 2493
Bsp143I GATC 9 cut(s) 47, 634, 1045, 1699, 2284, 2299, 2378, 2923, 3241
Bsp1720I GCTNAGC 1 cut(s) 2470
BspACI CCGC 7 cut(s) 14, 16, 419, 2197, 2718, 2769, 2830
BspANI GGCC 5 cut(s) 943, 1710, 1935, 2230, 2826
BspCNI CTCAG 6 cut(s) 238, 1958, 2137, 2483, 2545, 3072
BspDI ATCGAT 1 cut(s) 1478
BspFNI CGCG 1 cut(s) 16
BspHI TCATGA 2 cut(s) 1048, 3190
BspLI GGNNCC 8 cut(s) 636, 1872, 1936, 2184, 2301, 2574, 2873, 3013
BspMAI CTGCAG 2 cut(s) 528, 3050
BspMI ACCTGC 1 cut(s) 1706
BspPI GGATC 6 cut(s) 629, 642, 2279, 2294, 2307, 2386
BspT107I GGYRCC 1 cut(s) 2182
BspTNI GGTCTC 1 cut(s) 1669
BsrDI GCAATG 2 cut(s) 409, 2148
BsrI ACTGG 6 cut(s) 132, 582, 833, 1938, 2300, 3157
BssECI CCNNGG 6 cut(s) 14, 462, 1486, 1668, 2188, 2356
BssMI GATC 9 cut(s) 47, 634, 1045, 1699, 2284, 2299, 2378, 2923, 3241
BssNAI GTATAC 1 cut(s) 145
BssNI GRCGYC 2 cut(s) 2025, 2194
BssT1I CCWWGG 2 cut(s) 2188, 2356
Bst1107I GTATAC 1 cut(s) 145
Bst2UI CCWGG 6 cut(s) 464, 1433, 2180, 2577, 2724, 3095
Bst4CI ACNGT 8 cut(s) 1193, 1337, 1576, 1840, 2585, 2936, 3058, 3115
Bst6I CTCTTC 3 cut(s) 932, 1731, 2699
BstACI GRCGYC 2 cut(s) 2025, 2194
BstBAI YACGTR 2 cut(s) 563, 668
BstC8I GCNNGC 3 cut(s) 1890, 2155, 3046
BstDEI CTNAG 9 cut(s) 225, 647, 1945, 2124, 2245, 2470, 2532, 3080, 3245
BstDSI CCRYGG 2 cut(s) 14, 1486
BstFNI CGCG 1 cut(s) 16
BstKTI GATC 9 cut(s) 50, 637, 1048, 1702, 2287, 2302, 2381, 2926, 3244
BstMAI GTCTC 6 cut(s) 429, 1669, 2572, 2574, 2807, 3113
BstMBI GATC 9 cut(s) 47, 634, 1045, 1699, 2284, 2299, 2378, 2923, 3241
BstMWI GCNNNNNNNGC 4 cut(s) 487, 815, 824, 2447
BstNI CCWGG 6 cut(s) 464, 1433, 2180, 2577, 2724, 3095
BstNSI RCATGY 2 cut(s) 675, 2157
BstSCI CCNGG 9 cut(s) 462, 1431, 1668, 1710, 1756, 2178, 2575, 2722, 3093
BstSFI CTRYAG 5 cut(s) 524, 1532, 2445, 3046, 3222
BstSLI GKGCMC 1 cut(s) 1812
BstUI CGCG 1 cut(s) 16
BstV2I GAAGAC 3 cut(s) 48, 1514, 2016
BstX2I RGATCY 3 cut(s) 634, 2299, 3241
BstXI CCANNNNNNTGG 3 cut(s) 769, 2319, 2363
BstYI RGATCY 3 cut(s) 634, 2299, 3241
BstZ17I GTATAC 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 1478
Bsu36I CCTNAGG 1 cut(s) 1945
BsuI GTATCC 2 cut(s) 657, 2788
BsuRI GGCC 5 cut(s) 943, 1710, 1935, 2230, 2826
BsuTUI ATCGAT 1 cut(s) 1478
BtgI CCRYGG 2 cut(s) 14, 1486
BtsI GCAGTG 3 cut(s) 1108, 2610, 3055
BveI ACCTGC 1 cut(s) 1706
Cac8I GCNNGC 3 cut(s) 1890, 2155, 3046
CciI TCATGA 2 cut(s) 1048, 3190
Cfr13I GGNCC 6 cut(s) 1672, 1870, 1934, 2228, 2720, 2872
Cfr42I CCGCGG 1 cut(s) 17
ClaI ATCGAT 1 cut(s) 1478
CpoI CGGWCCG 1 cut(s) 1672
CseI GACGC 1 cut(s) 2202
Csp6I GTAC 5 cut(s) 372, 781, 2183, 2348, 2546
CspI CGGWCCG 1 cut(s) 1672
CviQI GTAC 5 cut(s) 372, 781, 2183, 2348, 2546
DdeI CTNAG 9 cut(s) 225, 647, 1945, 2124, 2245, 2470, 2532, 3080, 3245
DpnI GATC 9 cut(s) 49, 636, 1047, 1701, 2286, 2301, 2380, 2925, 3243
DpnII GATC 9 cut(s) 47, 634, 1045, 1699, 2284, 2299, 2378, 2923, 3241
DriI GACNNNNNGTC 1 cut(s) 2732
Eam1104I CTCTTC 3 cut(s) 932, 1731, 2699
Eam1105I GACNNNNNGTC 1 cut(s) 2732
EarI CTCTTC 3 cut(s) 932, 1731, 2699
Ecl136II GAGCTC 4 cut(s) 23, 459, 1785, 2469
Eco130I CCWWGG 2 cut(s) 2188, 2356
Eco24I GRGCYC 5 cut(s) 25, 461, 1787, 2471, 2493
Eco31I GGTCTC 1 cut(s) 1669
Eco47I GGWCC 4 cut(s) 1672, 1870, 2720, 2872
Eco53kI GAGCTC 4 cut(s) 23, 459, 1785, 2469
Eco57I CTGAAG 1 cut(s) 1755
Eco81I CCTNAGG 1 cut(s) 1945
Eco88I CYCGRG 1 cut(s) 3007
EcoICRI GAGCTC 4 cut(s) 23, 459, 1785, 2469
EcoO109I RGGNCCY 1 cut(s) 1870
EcoRI GAATTC 2 cut(s) 856, 3184
EcoRII CCWGG 6 cut(s) 462, 1431, 2178, 2575, 2722, 3093
EcoT14I CCWWGG 2 cut(s) 2188, 2356
EcoT22I ATGCAT 2 cut(s) 1694, 2520
EcoT38I GRGCYC 5 cut(s) 25, 461, 1787, 2471, 2493
ErhI CCWWGG 2 cut(s) 2188, 2356
FalI AAGNNNNNCTT 4 cut(s) 1251, 1283, 2696, 2728
FaqI GGGAC 3 cut(s) 200, 2159, 3163
FauNDI CATATG 2 cut(s) 312, 1399
FbaI TGATCA 1 cut(s) 1045
FblI GTMKAC 3 cut(s) 144, 344, 468
FriOI GRGCYC 5 cut(s) 25, 461, 1787, 2471, 2493
FspBI CTAG 5 cut(s) 918, 981, 2204, 2750, 3074
GsuI CTGGAG 4 cut(s) 2559, 2749, 3116, 3174
HaeIII GGCC 5 cut(s) 943, 1710, 1935, 2230, 2826
HapII CCGG 4 cut(s) 157, 1670, 1711, 1758
HgaI GACGC 1 cut(s) 2202
Hin1I GRCGYC 2 cut(s) 2025, 2194
HincII GTYRAC 2 cut(s) 345, 3091
HindII GTYRAC 2 cut(s) 345, 3091
HindIII AAGCTT 7 cut(s) 686, 1284, 1421, 1890, 1993, 2139, 2949
HpaII CCGG 4 cut(s) 157, 1670, 1711, 1758
HphI GGTGA 4 cut(s) 1446, 1526, 1778, 2485
Hpy166II GTNNAC 9 cut(s) 145, 345, 469, 575, 1385, 1810, 2023, 2054, 3091
Hpy8I GTNNAC 9 cut(s) 145, 345, 469, 575, 1385, 1810, 2023, 2054, 3091
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 9 cut(s) 389, 692, 721, 1461, 1824, 2219, 2749, 3097, 3134
HpyCH4III ACNGT 8 cut(s) 1193, 1337, 1576, 1840, 2585, 2936, 3058, 3115
HpyCH4IV ACGT 7 cut(s) 207, 347, 562, 667, 2025, 2056, 2886
HpyF10VI GCNNNNNNNGC 4 cut(s) 487, 815, 824, 2447
HpyF3I CTNAG 9 cut(s) 225, 647, 1945, 2124, 2245, 2470, 2532, 3080, 3245
HpySE526I ACGT 7 cut(s) 207, 347, 562, 667, 2025, 2056, 2886
Hsp92I GRCGYC 2 cut(s) 2025, 2194
KpnI GGTACC 1 cut(s) 2186
Ksp22I TGATCA 1 cut(s) 1045
KspI CCGCGG 1 cut(s) 17
Kzo9I GATC 9 cut(s) 47, 634, 1045, 1699, 2284, 2299, 2378, 2923, 3241
LmnI GCTCC 7 cut(s) 456, 464, 1782, 1855, 2446, 2466, 2578
MaeI CTAG 5 cut(s) 918, 981, 2204, 2750, 3074
MaeII ACGT 7 cut(s) 207, 347, 562, 667, 2025, 2056, 2886
MalI GATC 9 cut(s) 49, 636, 1047, 1701, 2286, 2301, 2380, 2925, 3243
MboI GATC 9 cut(s) 47, 634, 1045, 1699, 2284, 2299, 2378, 2923, 3241
MfeI CAATTG 1 cut(s) 2673
MflI RGATCY 3 cut(s) 634, 2299, 3241
MhlI GDGCHC 7 cut(s) 25, 461, 1787, 1812, 2443, 2471, 2493
MlyI GAGTC 4 cut(s) 350, 2534, 2742, 2933
MmeI TCCRAC 3 cut(s) 174, 603, 720
Mph1103I ATGCAT 2 cut(s) 1694, 2520
MroXI GAANNNNTTC 3 cut(s) 399, 828, 1521
MseI TTAA 6 cut(s) 1172, 1589, 2076, 2697, 2835, 3231
MslI CAYNNNNRTG 5 cut(s) 717, 1023, 1338, 1815, 2317
MspA1I CMGCKG 5 cut(s) 16, 709, 1320, 2769, 2972
MspI CCGG 4 cut(s) 157, 1670, 1711, 1758
MspR9I CCNGG 9 cut(s) 464, 1433, 1670, 1712, 1758, 2180, 2577, 2724, 3095
MunI CAATTG 1 cut(s) 2673
Mva1269I GAATGC 2 cut(s) 1974, 3034
MvaI CCWGG 6 cut(s) 464, 1433, 2180, 2577, 2724, 3095
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 4 cut(s) 487, 815, 824, 2447
NciI CCSGG 3 cut(s) 1670, 1712, 1758
NdeI CATATG 2 cut(s) 312, 1399
NdeII GATC 9 cut(s) 47, 634, 1045, 1699, 2284, 2299, 2378, 2923, 3241
NlaIV GGNNCC 8 cut(s) 636, 1872, 1936, 2184, 2301, 2574, 2873, 3013
NmeAIII GCCGAG 1 cut(s) 2549
NmuCI GTSAC 8 cut(s) 134, 238, 1103, 1570, 1766, 2776, 2936, 3050
NsiI ATGCAT 2 cut(s) 1694, 2520
NspI RCATGY 2 cut(s) 675, 2157
OliI CACNNNNGTG 1 cut(s) 1338
PaeI GCATGC 1 cut(s) 2157
PagI TCATGA 2 cut(s) 1048, 3190
PcsI WCGNNNNNNNCGW 3 cut(s) 43, 857, 2872
PctI GAATGC 2 cut(s) 1974, 3034
PdmI GAANNNNTTC 3 cut(s) 399, 828, 1521
PfeI GAWTC 7 cut(s) 743, 988, 1361, 1640, 2035, 2601, 2709
Pfl23II CGTACG 1 cut(s) 2545
PflMI CCANNNNNTGG 1 cut(s) 2729
PfoI TCCNGGA 1 cut(s) 2575
PleI GAGTC 4 cut(s) 349, 2534, 2741, 2933
PpsI GAGTC 4 cut(s) 349, 2534, 2741, 2933
Ppu21I YACGTR 2 cut(s) 563, 668
PpuMI RGGWCCY 1 cut(s) 1870
PshBI ATTAAT 1 cut(s) 1172
PsiI TTATAA 1 cut(s) 176
Psp124BI GAGCTC 4 cut(s) 25, 461, 1787, 2471
Psp5II RGGWCCY 1 cut(s) 1870
Psp6I CCWGG 6 cut(s) 462, 1431, 2178, 2575, 2722, 3093
PspGI CCWGG 6 cut(s) 462, 1431, 2178, 2575, 2722, 3093
PspLI CGTACG 1 cut(s) 2545
PspN4I GGNNCC 8 cut(s) 636, 1872, 1936, 2184, 2301, 2574, 2873, 3013
PspPI GGNCC 6 cut(s) 1672, 1870, 1934, 2228, 2720, 2872
PspPPI RGGWCCY 1 cut(s) 1870
PstI CTGCAG 2 cut(s) 528, 3050
PsuI RGATCY 3 cut(s) 634, 2299, 3241
PvuII CAGCTG 3 cut(s) 709, 1320, 2972
RsaI GTAC 5 cut(s) 373, 782, 2184, 2349, 2547
RsaNI GTAC 5 cut(s) 372, 781, 2183, 2348, 2546
RseI CAYNNNNRTG 5 cut(s) 717, 1023, 1338, 1815, 2317
Rsr2I CGGWCCG 1 cut(s) 1672
RsrII CGGWCCG 1 cut(s) 1672
SacI GAGCTC 4 cut(s) 25, 461, 1787, 2471
SacII CCGCGG 1 cut(s) 17
SalI GTCGAC 1 cut(s) 343
SaqAI TTAA 6 cut(s) 1172, 1589, 2076, 2697, 2835, 3231
Sau3AI GATC 9 cut(s) 47, 634, 1045, 1699, 2284, 2299, 2378, 2923, 3241
Sau96I GGNCC 6 cut(s) 1672, 1870, 1934, 2228, 2720, 2872
ScaI AGTACT 1 cut(s) 2349
SchI GAGTC 4 cut(s) 350, 2534, 2742, 2933
ScrFI CCNGG 9 cut(s) 464, 1433, 1670, 1712, 1758, 2180, 2577, 2724, 3095
SduI GDGCHC 7 cut(s) 25, 461, 1787, 1812, 2443, 2471, 2493
SfcI CTRYAG 5 cut(s) 524, 1532, 2445, 3046, 3222
Sfr303I CCGCGG 1 cut(s) 17
SgrBI CCGCGG 1 cut(s) 17
SinI GGWCC 4 cut(s) 1672, 1870, 2720, 2872
SmiMI CAYNNNNRTG 5 cut(s) 717, 1023, 1338, 1815, 2317
SmlI CTYRAG 3 cut(s) 905, 1859, 2807
SmoI CTYRAG 3 cut(s) 905, 1859, 2807
SphI GCATGC 1 cut(s) 2157
SsiI CCGC 7 cut(s) 14, 16, 419, 2197, 2718, 2769, 2830
SspI AATATT 2 cut(s) 997, 2695
SspMI CTAG 5 cut(s) 918, 981, 2204, 2750, 3074
SstI GAGCTC 4 cut(s) 25, 461, 1787, 2471
StyD4I CCNGG 9 cut(s) 462, 1431, 1668, 1710, 1756, 2178, 2575, 2722, 3093
StyI CCWWGG 2 cut(s) 2188, 2356
TaaI ACNGT 8 cut(s) 1193, 1337, 1576, 1840, 2585, 2936, 3058, 3115
TaiI ACGT 7 cut(s) 210, 350, 565, 670, 2028, 2059, 2889
TaqII GACCGA 1 cut(s) 1689
TatI WGTACW 3 cut(s) 371, 780, 2347
TauI GCSGC 2 cut(s) 2199, 2772
TfiI GAWTC 7 cut(s) 743, 988, 1361, 1640, 2035, 2601, 2709
Tru1I TTAA 6 cut(s) 1172, 1589, 2076, 2697, 2835, 3231
Tru9I TTAA 6 cut(s) 1172, 1589, 2076, 2697, 2835, 3231
TseFI GTSAC 8 cut(s) 134, 238, 1103, 1570, 1766, 2776, 2936, 3050
Tsp45I GTSAC 8 cut(s) 134, 238, 1103, 1570, 1766, 2776, 2936, 3050
TspGWI ACGGA 5 cut(s) 941, 1475, 2028, 2533, 2864
Van91I CCANNNNNTGG 1 cut(s) 2729
VneI GTGCAC 1 cut(s) 1808
VpaK11BI GGWCC 4 cut(s) 1672, 1870, 2720, 2872
VspI ATTAAT 1 cut(s) 1172
XapI RAATTY 6 cut(s) 550, 856, 973, 1150, 2306, 3184
XceI RCATGY 2 cut(s) 675, 2157
XcmI CCANNNNNNNNNTGG 1 cut(s) 769
XmiI GTMKAC 3 cut(s) 144, 344, 468
XmnI GAANNNNTTC 3 cut(s) 399, 828, 1521
XspI CTAG 5 cut(s) 918, 981, 2204, 2750, 3074
ZraI GACGTC 1 cut(s) 2026
ZrmI AGTACT 1 cut(s) 2349
Zsp2I ATGCAT 2 cut(s) 1694, 2520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.