Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005047

Physical Location & Seq

Genomic Coordinates Forward (+)

8420265 .. 8422985

Gene Structure 2721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGACGCTAAAGAAACCTCTGCCACCGATTTGAAAAGACCGAGAGAAGAGGATGATAACGGCGGCGCCGCTACCATGGAGACGGAGAACGGAGATCAGAAAAAGGAACCTGCTTGTTTCTCCACTGTTATTCCTGGGTGGTTCTCTGAAATGAGTCCTATGTGGCCAGGAGAGGCACACTCATTGAAGGTTGAGAAAGTTTTGTTTCAAGGGAAATCAGATTATCAGGATGTTATTGTTTTCCAGTCTGCAACATATGGAAAAGTTTTGGTTTTGGATGGAGTAATCCAACTTACGGAGAGAGATGAATGTGCTTATCAGGAAATGATCACTCATCTTCCTTTGTGTTCTATCCCTAACCCTAAGAAGGTTTTGGTCATTGGAGGAGGAGATGGAGGTGTCCTGCGGGAAGTTGCACGCCATGCTTCTATTGAGCAGATTGACATGTGTGAAATTGATAAAATGGTGGTCGACGTGTCTAAGCAATTTTTCCCTGATGTAGCAATTGGATATGAGGATCCTCGCGTGAACCTTGTCATTGGCGATGGTGTTGCTTTCTTGAAGAATGCTGCTGAAGGATCATACGATGCAGTTATTGTTGACTCTTCAGATCCAATCGGTCCTGCAAAGGAGCTGTTTGAGAAACCCTTCTTCCAATCTGTGGCTAGAGCTCTTCGTCCTGGTGGAGTTGTGTGCACTCAAGCTGAAAGCTTGTGGCTTCACATGGACATCATCGAAGACATTGTTTCCAACTGCCGTGAGATCTTCAAGGGTTCTGTGAACTATGCTTGGACCAGCGTTCCAACATACCCCAGTGGGGTCATTGGATTTATGCTTTGTTCAACTGAAGGACCTGATGTTGACTTCAAACACCCACTGAACCCAATTGACGAGAGCTCCAGCAAATCAAATGGACCTTTGAAGTTTTACAATGCCGAGATTCATTCAGCTGCATTCTGCTTGCCTTCTTTCGCCAAGAAGGTCATTGAGTCAAAAGCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004766 GO:0005575 GO:0005623 GO:0005886 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044464 GO:0071704 GO:0071944 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko00960 ko01100 ko01110 map00270 map00330 map00410 map00480 map00960 map01100 map01110

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

334

Amino Acids

36.55

Weight (kDa)

4.72

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	90 - 144	3.6e-24	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	147 - 319	5.8e-74	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23820 AT1G23820 AT1G70310
fragaria_vesca	FvH4_4g34680
malus_domestica	MD13G1090400.v1.1 MD14G1183600.v1.1 MD16G1091000.v1.1
prunus_persica	Prupe.1G255300_v2.0.a1 Prupe.5G176100_v2.0.a1
pyrus_communis	pycom13g07870 pycom16g07770
rosa_chinensis	RchiOBHm_Chr4g0444031 RchiOBHm_Chr7g0193881
rosa_laevigata	RLG00000004238 RLG00000005863
rosa_multiflora	Rmu_sc0015522.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261760 Rroxscaffold_5G00384600
rosa_rugosa	Rorug04G0349100 Rorug07G0012500
rosa_samantha	Rh4AG409900 Rh4BG421000 Rh4CG435300 Rh4DG416200 Rh7AG139200 Rh7BG139600 Rh7CG143100 Rh7DG140700
rosa_wichuraiana	Rw4G035210 Rw7G011880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	661
AccI	GTMKAC	1 cut(s)	471
AccII	CGCG	1 cut(s)	525
AciI	CCGC	3 cut(s)	63, 69, 406
AclWI	GGATC	4 cut(s)	512, 525, 586, 605
AcoI	YGGCCR	1 cut(s)	164
AcuI	CTGAAG	3 cut(s)	591, 594, 867
AcyI	GRCGYC	1 cut(s)	66
AfiI	CCNNNNNNNGG	4 cut(s)	295, 367, 661, 817
AflIII	ACRYGT	2 cut(s)	444, 474
AgsI	TTSAA	8 cut(s)	34, 187, 209, 562, 769, 843, 868, 922
AjiI	CACGTC	1 cut(s)	475
AjnI	CCWGG	3 cut(s)	133, 166, 679
AluBI	AGCT	6 cut(s)	634, 671, 704, 711, 897, 950
AluI	AGCT	6 cut(s)	634, 671, 704, 711, 897, 950
Alw21I	GWGCWC	3 cut(s)	673, 698, 899
Alw26I	GTCTC	1 cut(s)	74
Alw44I	GTGCAC	1 cut(s)	694
AlwI	GGATC	4 cut(s)	512, 525, 586, 605
AoxI	GGCC	1 cut(s)	164
ApaLI	GTGCAC	1 cut(s)	694
ApeKI	GCWGC	2 cut(s)	569, 950
Asp700I	GAANNNNTTC	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	4 cut(s)	620, 792, 851, 914
AvaII	GGWCC	4 cut(s)	620, 792, 851, 914
BaeGI	GKGCMC	1 cut(s)	698
BalI	TGGCCA	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	673, 899
BbsI	GAAGAC	1 cut(s)	744
Bbv12I	GWGCWC	3 cut(s)	673, 698, 899
BbvI	GCAGC	2 cut(s)	556, 937
BccI	CCATC	3 cut(s)	272, 386, 539
BceAI	ACGGC	2 cut(s)	76, 741
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	3 cut(s)	135, 168, 681
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	666
BfoI	RGCGCY	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	762
BisI	GCNGC	4 cut(s)	64, 69, 570, 951
BlsI	GCNGC	4 cut(s)	65, 70, 571, 952
Bme1390I	CCNGG	3 cut(s)	135, 168, 681
Bme18I	GGWCC	4 cut(s)	620, 792, 851, 914
BmgBI	CACGTC	1 cut(s)	475
BmgT120I	GGNCC	4 cut(s)	620, 792, 851, 914
BmiI	GGNNCC	3 cut(s)	67, 108, 519
BmrFI	CCNGG	3 cut(s)	135, 168, 681
BmrI	ACTGGG	1 cut(s)	807
BmsI	GCATC	1 cut(s)	577
BmuI	ACTGGG	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	744
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	883
BpuEI	CTTGAG	1 cut(s)	684
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	75, 134
BsaXI	ACNNNNNCTCC	2 cut(s)	881, 911
Bsc4I	CCNNNNNNNGG	4 cut(s)	295, 367, 661, 817
Bse1I	ACTGG	2 cut(s)	244, 813
BseBI	CCWGG	3 cut(s)	135, 168, 681
BseDI	CCNNGG	2 cut(s)	75, 134
BseGI	GGATG	3 cut(s)	58, 235, 283
BseLI	CCNNNNNNNGG	4 cut(s)	295, 367, 661, 817
BseNI	ACTGG	2 cut(s)	244, 813
BseRI	GAGGAG	2 cut(s)	399, 402
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	2 cut(s)	556, 937
Bsh1236I	CGCG	1 cut(s)	525
BshFI	GGCC	1 cut(s)	166
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	3 cut(s)	673, 698, 899
BslI	CCNNNNNNNGG	4 cut(s)	295, 367, 661, 817
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsmI	GAATGC	2 cut(s)	571, 953
BsnI	GGCC	1 cut(s)	166
Bsp1286I	GDGCHC	3 cut(s)	673, 698, 899
Bsp143I	GATC	6 cut(s)	94, 327, 517, 578, 610, 762
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	3 cut(s)	63, 69, 406
BspANI	GGCC	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	525
BspLI	GGNNCC	3 cut(s)	67, 108, 519
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	4 cut(s)	512, 525, 586, 605
BspQI	GCTCTTC	1 cut(s)	678
BspT107I	GGYRCC	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	244, 813
BssECI	CCNNGG	2 cut(s)	75, 134
BssMI	GATC	6 cut(s)	94, 327, 517, 578, 610, 762
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	3 cut(s)	135, 168, 681
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	3 cut(s)	42, 610, 678
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	418, 962
BstDEI	CTNAG	2 cut(s)	363, 480
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	3 cut(s)	58, 235, 283
BstFNI	CGCG	1 cut(s)	525
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	6 cut(s)	97, 330, 520, 581, 613, 765
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	6 cut(s)	94, 327, 517, 578, 610, 762
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNI	CCWGG	3 cut(s)	135, 168, 681
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	3 cut(s)	133, 166, 679
BstSLI	GKGCMC	1 cut(s)	698
BstUI	CGCG	1 cut(s)	525
BstV1I	GCAGC	2 cut(s)	556, 937
BstV2I	GAAGAC	1 cut(s)	744
BstX2I	RGATCY	3 cut(s)	517, 610, 762
BstYI	RGATCY	3 cut(s)	517, 610, 762
BsuRI	GGCC	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	558
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	3 cut(s)	58, 235, 283
BtsIMutI	CAGTG	3 cut(s)	123, 820, 875
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	418, 962
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	4 cut(s)	620, 792, 851, 914
CseI	GACGC	1 cut(s)	14
CviAII	CATG	4 cut(s)	76, 422, 445, 724
DdeI	CTNAG	2 cut(s)	363, 480
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	6 cut(s)	96, 329, 519, 580, 612, 764
DpnII	GATC	6 cut(s)	94, 327, 517, 578, 610, 762
EaeI	YGGCCR	1 cut(s)	164
Eam1104I	CTCTTC	3 cut(s)	42, 610, 678
EarI	CTCTTC	3 cut(s)	42, 610, 678
Ecl136II	GAGCTC	2 cut(s)	671, 897
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	673, 899
Eco47I	GGWCC	4 cut(s)	620, 792, 851, 914
Eco53kI	GAGCTC	2 cut(s)	671, 897
Eco57I	CTGAAG	3 cut(s)	591, 594, 867
EcoICRI	GAGCTC	2 cut(s)	671, 897
EcoO109I	RGGNCCY	1 cut(s)	851
EcoRII	CCWGG	3 cut(s)	133, 166, 679
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	673, 899
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	4 cut(s)	79, 425, 448, 727
FatI	CATG	4 cut(s)	75, 421, 444, 723
FauI	CCCGC	1 cut(s)	399
FauNDI	CATATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	4 cut(s)	64, 69, 570, 951
FokI	GGATG	3 cut(s)	65, 242, 290
FriOI	GRGCYC	2 cut(s)	673, 899
Fsp4HI	GCNGC	4 cut(s)	64, 69, 570, 951
FspBI	CTAG	1 cut(s)	666
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	4 cut(s)	64, 69, 570, 951
GsuI	CTGGAG	1 cut(s)	883
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	166
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	79, 425, 448, 727
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	3 cut(s)	472, 601, 862
HindII	GTYRAC	3 cut(s)	472, 601, 862
HindIII	AAGCTT	1 cut(s)	709
HinfI	GANTC	4 cut(s)	154, 602, 940, 989
Hpy166II	GTNNAC	6 cut(s)	472, 529, 601, 696, 781, 862
Hpy188I	TCNGA	4 cut(s)	99, 148, 220, 610
Hpy188III	TCNNGA	3 cut(s)	227, 320, 559
Hpy8I	GTNNAC	6 cut(s)	472, 529, 601, 696, 781, 862
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	7 cut(s)	181, 361, 569, 658, 842, 973, 975
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	6 cut(s)	251, 416, 590, 626, 696, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	2 cut(s)	363, 480
HpySE526I	ACGT	1 cut(s)	474
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	4 cut(s)	79, 425, 448, 727
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	6 cut(s)	94, 327, 517, 578, 610, 762
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	2 cut(s)	631, 902
Lsp1109I	GCAGC	2 cut(s)	556, 937
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	1 cut(s)	474
MalI	GATC	6 cut(s)	96, 329, 519, 580, 612, 764
MboI	GATC	6 cut(s)	94, 327, 517, 578, 610, 762
MboII	GAAGA	8 cut(s)	59, 329, 574, 597, 643, 665, 749, 757
MfeI	CAATTG	3 cut(s)	504, 885, 1000
MflI	RGATCY	3 cut(s)	517, 610, 762
MhlI	GDGCHC	3 cut(s)	673, 698, 899
MlsI	TGGCCA	1 cut(s)	166
MluCI	AATT	5 cut(s)	453, 485, 504, 885, 1000
MluNI	TGGCCA	1 cut(s)	166
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	3 cut(s)	163, 596, 998
MmeI	TCCRAC	3 cut(s)	313, 774, 827
MnlI	CCTC	8 cut(s)	28, 43, 166, 377, 380, 389, 508, 531
Mox20I	TGGCCA	1 cut(s)	166
MroXI	GAANNNNTTC	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	166
Msp20I	TGGCCA	1 cut(s)	166
MspA1I	CMGCKG	1 cut(s)	950
MspR9I	CCNGG	3 cut(s)	135, 168, 681
MunI	CAATTG	3 cut(s)	504, 885, 1000
Mva1269I	GAATGC	2 cut(s)	571, 953
MvaI	CCWGG	3 cut(s)	135, 168, 681
MvnI	CGCG	1 cut(s)	525
MwoI	GCNNNNNNNGC	1 cut(s)	422
NarI	GGCGCC	1 cut(s)	66
NcoI	CCATGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	6 cut(s)	94, 327, 517, 578, 610, 762
NlaIII	CATG	4 cut(s)	79, 425, 448, 727
NlaIV	GGNNCC	3 cut(s)	67, 108, 519
NmeAIII	GCCGAG	1 cut(s)	961
NspI	RCATGY	1 cut(s)	448
PciI	ACATGT	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	678
PctI	GAATGC	2 cut(s)	571, 953
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	1 cut(s)	940
PflMI	CCANNNNNTGG	1 cut(s)	661
PkrI	GCNGC	4 cut(s)	65, 70, 571, 952
PleI	GAGTC	3 cut(s)	162, 596, 997
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	3 cut(s)	162, 596, 997
PpuMI	RGGWCCY	1 cut(s)	851
PscI	ACATGT	1 cut(s)	444
Psp124BI	GAGCTC	2 cut(s)	673, 899
Psp5II	RGGWCCY	1 cut(s)	851
Psp6I	CCWGG	3 cut(s)	133, 166, 679
PspGI	CCWGG	3 cut(s)	133, 166, 679
PspN4I	GGNNCC	3 cut(s)	67, 108, 519
PspPI	GGNCC	4 cut(s)	620, 792, 851, 914
PspPPI	RGGWCCY	1 cut(s)	851
PsuI	RGATCY	3 cut(s)	517, 610, 762
PvuII	CAGCTG	1 cut(s)	950
SacI	GAGCTC	2 cut(s)	673, 899
SalI	GTCGAC	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	678
SatI	GCNGC	4 cut(s)	64, 69, 570, 951
Sau3AI	GATC	6 cut(s)	94, 327, 517, 578, 610, 762
Sau96I	GGNCC	4 cut(s)	620, 792, 851, 914
SchI	GAGTC	3 cut(s)	163, 596, 998
ScrFI	CCNGG	3 cut(s)	135, 168, 681
SduI	GDGCHC	3 cut(s)	673, 698, 899
SfaNI	GCATC	1 cut(s)	577
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	4 cut(s)	620, 792, 851, 914
SmlI	CTYRAG	1 cut(s)	699
SmoI	CTYRAG	1 cut(s)	699
Sse9I	AATT	5 cut(s)	453, 485, 504, 885, 1000
SsiI	CCGC	3 cut(s)	63, 69, 406
SspDI	GGCGCC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	666
SstI	GAGCTC	2 cut(s)	673, 899
StyD4I	CCNGG	3 cut(s)	133, 166, 679
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	2 cut(s)	471, 735
TaqII	GACCGA	2 cut(s)	55, 608
TasI	AATT	5 cut(s)	453, 485, 504, 885, 1000
TauI	GCSGC	2 cut(s)	66, 71
TfiI	GAWTC	1 cut(s)	940
TscAI	CASTG	3 cut(s)	130, 820, 882
TseI	GCWGC	2 cut(s)	569, 950
TspDTI	ATGAA	2 cut(s)	321, 932
TspGWI	ACGGA	3 cut(s)	98, 105, 311
TspRI	CASTG	3 cut(s)	130, 820, 882
Van91I	CCANNNNNTGG	1 cut(s)	661
VneI	GTGCAC	1 cut(s)	694
VpaK11BI	GGWCC	4 cut(s)	620, 792, 851, 914
XceI	RCATGY	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	471
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.