Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005047

Physical Location & Seq

Genomic Coordinates Reverse (-)

55936282 .. 55939243

Gene Structure 2962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAGAAGAGAGGTACTGGCGTTACTACTACTACTATGCATGAATCTGCAGCATTACTATGCGGTACAAATTTGTACGTTAAAAAGCCAAAAGAAGATGTTGATGATGAACTACTTAGGGCGGTTAATGGTGATCTCAGCTATGATATCGACTCTACCCCACTAGTCTCAGCCGGAATTGATGATGAACACGATGAAGAACCAGGGAATGATCTTGTAAATCATCCTGAGATTCCTGGATGGTTTTCTGAGTATTGTCCAGTTTGGCCAGGGCAAGCACACTTTTTGAAGGTAGAAAAGATCTTATTTCAAGGGAAGTCCCAGTACCAAAGTATGATGGTATTTCAGTCATCAGCATATGGGAAGGTTTTTGTTCTGGATGGAGCCCTGCAACTCACTGAAAAGGATGAGTGTGCTTACCAAGAAATGATTACACATCTTCCTCTCTGCTCCATTCCAAACCCAAAAAAGGTATTACTCATTGGAGGAGGAGATGGCGGAATTTTAAGGGAAATTTCTCGACACTCTTCTGTTGAGCAGATTGATATATGCGAAATAGACACCATGTTAGTTGATATCTACAAGAAATTTTTTCCTGATGTTGCTATTGGATACAAGGACCCTCGAGTAACTCTTCATGTTAAAGATGGTACTGAATTTTGTAAGTACGTTCCAGAAGGAACATATGATGCAATAATAGTGGACGCCTTTGACCCAATAAGGCCTGGTCATGAGCTTCTTGATGATGAGACTCCCTTCTTTGAACTGGTGAGAAAAGCTCTCCGCCCTGGAGGCGTCATGTGCATCCAAGCAGAAAGCATATGGTTTCGCTCCTTCCAGGTTGATGAACTCGTTGCAAAATGTCGCCAAATTTTCGAAGGCTCTGTTGACTATGCTTGGACAATTGTTCCAGCATATCCAAGTGGGGTGATTGGTTTCTTGCTTTGCTCCAAGGAGTGGTCATACGTGAACTTCAGAAATCCTATCAACCCGATTAACCCCAACAATAGTTACGGAGTATCAAAAGAGCCCTTGAAATTTTACAATTCAGAGGTACACATGGCTGCATTTTGTTTGCCATCGTTTGCGAAGAAGCTAGCTGAGGCACAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

371

Amino Acids

41.61

Weight (kDa)

4.85

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	80 - 134	2e-20	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	137 - 324	6e-63	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23820 AT1G23820 AT1G70310
fragaria_vesca	FvH4_4g34680
malus_domestica	MD13G1090400.v1.1 MD14G1183600.v1.1 MD16G1091000.v1.1
prunus_persica	Prupe.1G255300_v2.0.a1 Prupe.5G176100_v2.0.a1
pyrus_communis	pycom13g07870 pycom16g07770
rosa_chinensis	RchiOBHm_Chr4g0444031 RchiOBHm_Chr7g0193881
rosa_laevigata	RLG00000004238 RLG00000005863
rosa_multiflora	Rmu_sc0015522.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261760 Rroxscaffold_5G00384600
rosa_rugosa	Rorug04G0349100 Rorug07G0012500
rosa_samantha	Rh4AG409900 Rh4BG421000 Rh4CG435300 Rh4DG416200 Rh7AG139200 Rh7BG139600 Rh7CG143100 Rh7DG140700
rosa_wichuraiana	Rw4G035210 Rw7G011880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	957
AciI	CCGC	4 cut(s)	63, 122, 498, 784
AcoI	YGGCCR	1 cut(s)	266
AcsI	RAATTY	7 cut(s)	70, 501, 513, 587, 656, 870, 1037
AcuI	CTGAAG	1 cut(s)	958
AcyI	GRCGYC	2 cut(s)	705, 795
AfaI	GTAC	7 cut(s)	16, 67, 77, 326, 652, 668, 1056
AfiI	CCNNNNNNNGG	2 cut(s)	469, 957
AgsI	TTSAA	4 cut(s)	289, 311, 764, 1036
AhlI	ACTAGT	1 cut(s)	163
AjnI	CCWGG	6 cut(s)	202, 235, 268, 724, 787, 837
AleI	CACNNNNGTG	1 cut(s)	1111
AluBI	AGCT	5 cut(s)	141, 736, 779, 1096, 1100
AluI	AGCT	5 cut(s)	141, 736, 779, 1096, 1100
Alw26I	GTCTC	2 cut(s)	172, 743
Ama87I	CYCGRG	1 cut(s)	624
AoxI	GGCC	2 cut(s)	266, 722
ApeKI	GCWGC	2 cut(s)	50, 1064
ApoI	RAATTY	7 cut(s)	70, 501, 513, 587, 656, 870, 1037
AspS9I	GGNCC	1 cut(s)	619
AsuHPI	GGTGA	3 cut(s)	143, 781, 940
AsuII	TTCGAA	1 cut(s)	876
AsuNHI	GCTAGC	1 cut(s)	1096
AvaI	CYCGRG	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	619
BaeI	ACNNNNGTAYC	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	388, 1032
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
BbvCI	CCTCAGC	1 cut(s)	1101
BbvI	GCAGC	2 cut(s)	62, 1051
BccI	CCATC	6 cut(s)	234, 331, 374, 488, 641, 1087
BciT130I	CCWGG	6 cut(s)	204, 237, 270, 726, 789, 839
BciVI	GTATCC	1 cut(s)	605
BcoDI	GTCTC	2 cut(s)	172, 743
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	2 cut(s)	164, 1097
BfmI	CTRYAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	605
BglI	GCCNNNNNGGC	1 cut(s)	792
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	2 cut(s)	51, 1065
BlsI	GCNGC	2 cut(s)	52, 1066
Bme1390I	CCNGG	6 cut(s)	204, 237, 270, 726, 789, 839
Bme18I	GGWCC	1 cut(s)	619
BmeT110I	CYCGRG	1 cut(s)	624
BmgT120I	GGNCC	1 cut(s)	619
BmiI	GGNNCC	2 cut(s)	385, 621
BmrFI	CCNGG	6 cut(s)	204, 237, 270, 726, 789, 839
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	2 cut(s)	679, 813
BmtI	GCTAGC	1 cut(s)	1100
BmuI	ACTGGG	1 cut(s)	316
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
BpmI	CTGGAG	1 cut(s)	810
Bpu10I	CCTNAGC	1 cut(s)	1101
Bpu14I	TTCGAA	1 cut(s)	876
BsaAI	YACGTR	1 cut(s)	967
BsaHI	GRCGYC	2 cut(s)	705, 795
BsaJI	CCNNGG	4 cut(s)	203, 269, 787, 951
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 957
Bse1I	ACTGG	4 cut(s)	22, 260, 322, 771
BseBI	CCWGG	6 cut(s)	204, 237, 270, 726, 789, 839
BseDI	CCNNGG	4 cut(s)	203, 269, 787, 951
BseGI	GGATG	5 cut(s)	223, 245, 385, 412, 804
BseLI	CCNNNNNNNGG	2 cut(s)	469, 957
BseMII	CTCAG	5 cut(s)	151, 183, 219, 240, 1092
BseNI	ACTGG	4 cut(s)	22, 260, 322, 771
BseRI	GAGGAG	2 cut(s)	501, 504
BseXI	GCAGC	2 cut(s)	62, 1051
BshFI	GGCC	2 cut(s)	268, 724
BsiHKCI	CYCGRG	1 cut(s)	624
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	469, 957
BsmAI	GTCTC	2 cut(s)	172, 743
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	268, 724
BsoBI	CYCGRG	1 cut(s)	624
Bsp119I	TTCGAA	1 cut(s)	876
Bsp1286I	GDGCHC	2 cut(s)	388, 1032
Bsp143I	GATC	3 cut(s)	133, 211, 300
BspACI	CCGC	4 cut(s)	63, 122, 498, 784
BspANI	GGCC	2 cut(s)	268, 724
BspCNI	CTCAG	5 cut(s)	150, 182, 220, 241, 1093
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	2 cut(s)	385, 621
BspMAI	CTGCAG	1 cut(s)	52
BspOI	GCTAGC	1 cut(s)	1100
BspT104I	TTCGAA	1 cut(s)	876
BsrI	ACTGG	4 cut(s)	22, 260, 322, 771
BssECI	CCNNGG	4 cut(s)	203, 269, 787, 951
BssMI	GATC	3 cut(s)	133, 211, 300
BssNI	GRCGYC	2 cut(s)	705, 795
BssT1I	CCWWGG	1 cut(s)	951
Bst2UI	CCWGG	6 cut(s)	204, 237, 270, 726, 789, 839
Bst6I	CTCTTC	3 cut(s)	2, 532, 639
BstACI	GRCGYC	2 cut(s)	705, 795
BstBAI	YACGTR	1 cut(s)	967
BstBI	TTCGAA	1 cut(s)	876
BstC8I	GCNNGC	2 cut(s)	276, 1098
BstDEI	CTNAG	6 cut(s)	116, 137, 169, 228, 249, 1101
BstF5I	GGATG	5 cut(s)	223, 245, 385, 412, 804
BstKTI	GATC	3 cut(s)	136, 214, 303
BstMAI	GTCTC	2 cut(s)	172, 743
BstMBI	GATC	3 cut(s)	133, 211, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	792, 801
BstNI	CCWGG	6 cut(s)	204, 237, 270, 726, 789, 839
BstSCI	CCNGG	6 cut(s)	202, 235, 268, 724, 787, 837
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	62, 1051
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	2 cut(s)	268, 724
BtsCI	GGATG	5 cut(s)	223, 245, 385, 412, 804
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	276, 1098
CciI	TCATGA	1 cut(s)	730
Cfr13I	GGNCC	1 cut(s)	619
CseI	GACGC	2 cut(s)	713, 784
Csp6I	GTAC	7 cut(s)	15, 66, 76, 325, 651, 667, 1055
CspCI	CAANNNNNGTGG	2 cut(s)	681, 716
CviAII	CATG	6 cut(s)	41, 565, 638, 731, 799, 1060
CviQI	GTAC	7 cut(s)	15, 66, 76, 325, 651, 667, 1055
DdeI	CTNAG	6 cut(s)	116, 137, 169, 228, 249, 1101
DpnI	GATC	3 cut(s)	135, 213, 302
DpnII	GATC	3 cut(s)	133, 211, 300
EaeI	YGGCCR	1 cut(s)	266
Eam1104I	CTCTTC	3 cut(s)	2, 532, 639
EarI	CTCTTC	3 cut(s)	2, 532, 639
EciI	GGCGGA	2 cut(s)	513, 773
Eco130I	CCWWGG	1 cut(s)	951
Eco147I	AGGCCT	1 cut(s)	724
Eco24I	GRGCYC	2 cut(s)	388, 1032
Eco32I	GATATC	2 cut(s)	148, 577
Eco47I	GGWCC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	958
Eco88I	CYCGRG	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRII	CCWGG	6 cut(s)	202, 235, 268, 724, 787, 837
EcoRV	GATATC	2 cut(s)	148, 577
EcoT14I	CCWWGG	1 cut(s)	951
EcoT22I	ATGCAT	1 cut(s)	42
EcoT38I	GRGCYC	2 cut(s)	388, 1032
ErhI	CCWWGG	1 cut(s)	951
FaeI	CATG	6 cut(s)	44, 568, 641, 734, 802, 1063
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	6 cut(s)	40, 564, 637, 730, 798, 1059
FauNDI	CATATG	3 cut(s)	358, 685, 821
Fnu4HI	GCNGC	2 cut(s)	51, 1065
FokI	GGATG	5 cut(s)	210, 252, 392, 419, 791
FriOI	GRGCYC	2 cut(s)	388, 1032
Fsp4HI	GCNGC	2 cut(s)	51, 1065
FspBI	CTAG	2 cut(s)	164, 1097
GluI	GCNGC	2 cut(s)	51, 1065
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	2 cut(s)	268, 724
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	2 cut(s)	713, 784
Hin1I	GRCGYC	2 cut(s)	705, 795
Hin1II	CATG	6 cut(s)	44, 568, 641, 734, 802, 1063
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HinfI	GANTC	4 cut(s)	44, 152, 232, 751
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	3 cut(s)	143, 781, 940
Hpy166II	GTNNAC	4 cut(s)	703, 889, 970, 1057
Hpy188I	TCNGA	3 cut(s)	250, 977, 1051
Hpy188III	TCNNGA	7 cut(s)	227, 377, 519, 596, 674, 731, 740
Hpy8I	GTNNAC	4 cut(s)	703, 889, 970, 1057
HpyAV	CCTTC	6 cut(s)	283, 358, 671, 766, 844, 872
HpyCH4IV	ACGT	3 cut(s)	78, 669, 966
HpyCH4V	TGCA	7 cut(s)	40, 50, 391, 692, 804, 857, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	792, 801
HpyF3I	CTNAG	6 cut(s)	116, 137, 169, 228, 249, 1101
HpySE526I	ACGT	3 cut(s)	78, 669, 966
Hsp92I	GRCGYC	2 cut(s)	705, 795
Hsp92II	CATG	6 cut(s)	44, 568, 641, 734, 802, 1063
Kzo9I	GATC	3 cut(s)	133, 211, 300
LmnI	GCTCC	4 cut(s)	383, 455, 836, 953
Lsp1109I	GCAGC	2 cut(s)	62, 1051
LweI	GCATC	2 cut(s)	679, 813
MaeI	CTAG	2 cut(s)	164, 1097
MaeII	ACGT	3 cut(s)	78, 669, 966
MaeIII	GTNAC	3 cut(s)	22, 628, 1010
MalI	GATC	3 cut(s)	135, 213, 302
MboI	GATC	3 cut(s)	133, 211, 300
MboII	GAAGA	7 cut(s)	19, 107, 209, 431, 519, 626, 1102
MfeI	CAATTG	2 cut(s)	903, 1109
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	2 cut(s)	388, 1032
MlsI	TGGCCA	1 cut(s)	268
MluNI	TGGCCA	1 cut(s)	268
MlyI	GAGTC	2 cut(s)	146, 745
MnlI	CCTC	8 cut(s)	5, 453, 479, 482, 633, 785, 1045, 1096
Mox20I	TGGCCA	1 cut(s)	268
Mph1103I	ATGCAT	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	268
MseI	TTAA	5 cut(s)	81, 126, 506, 642, 996
MslI	CAYNNNNRTG	2 cut(s)	58, 1111
Msp20I	TGGCCA	1 cut(s)	268
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	6 cut(s)	204, 237, 270, 726, 789, 839
MunI	CAATTG	2 cut(s)	903, 1109
MvaI	CCWGG	6 cut(s)	204, 237, 270, 726, 789, 839
MwoI	GCNNNNNNNGC	2 cut(s)	792, 801
NdeI	CATATG	3 cut(s)	358, 685, 821
NdeII	GATC	3 cut(s)	133, 211, 300
NheI	GCTAGC	1 cut(s)	1096
NlaIII	CATG	6 cut(s)	44, 568, 641, 734, 802, 1063
NlaIV	GGNNCC	2 cut(s)	385, 621
NsiI	ATGCAT	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	876
OliI	CACNNNNGTG	1 cut(s)	1111
PaeR7I	CTCGAG	1 cut(s)	624
PagI	TCATGA	1 cut(s)	730
PceI	AGGCCT	1 cut(s)	724
PfeI	GAWTC	2 cut(s)	44, 232
PflMI	CCANNNNNTGG	1 cut(s)	957
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	52, 1066
PleI	GAGTC	2 cut(s)	146, 745
PpsI	GAGTC	2 cut(s)	146, 745
Ppu21I	YACGTR	1 cut(s)	967
PpuMI	RGGWCCY	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	6 cut(s)	202, 235, 268, 724, 787, 837
PspGI	CCWGG	6 cut(s)	202, 235, 268, 724, 787, 837
PspN4I	GGNNCC	2 cut(s)	385, 621
PspPI	GGNCC	1 cut(s)	619
PspPPI	RGGWCCY	1 cut(s)	619
PspXI	VCTCGAGB	1 cut(s)	624
PstI	CTGCAG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	7 cut(s)	16, 67, 77, 326, 652, 668, 1056
RsaNI	GTAC	7 cut(s)	15, 66, 76, 325, 651, 667, 1055
RseI	CAYNNNNRTG	2 cut(s)	58, 1111
SaqAI	TTAA	5 cut(s)	81, 126, 506, 642, 996
SatI	GCNGC	2 cut(s)	51, 1065
Sau3AI	GATC	3 cut(s)	133, 211, 300
Sau96I	GGNCC	1 cut(s)	619
SchI	GAGTC	2 cut(s)	146, 745
ScrFI	CCNGG	6 cut(s)	204, 237, 270, 726, 789, 839
SduI	GDGCHC	2 cut(s)	388, 1032
SfaNI	GCATC	2 cut(s)	679, 813
SfcI	CTRYAG	1 cut(s)	48
Sfr274I	CTCGAG	1 cut(s)	624
SfuI	TTCGAA	1 cut(s)	876
SinI	GGWCC	1 cut(s)	619
SlaI	CTCGAG	1 cut(s)	624
SmiMI	CAYNNNNRTG	2 cut(s)	58, 1111
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
SpeI	ACTAGT	1 cut(s)	163
SseBI	AGGCCT	1 cut(s)	724
SsiI	CCGC	4 cut(s)	63, 122, 498, 784
SspMI	CTAG	2 cut(s)	164, 1097
StuI	AGGCCT	1 cut(s)	724
StyD4I	CCNGG	6 cut(s)	202, 235, 268, 724, 787, 837
StyI	CCWWGG	1 cut(s)	951
TaiI	ACGT	3 cut(s)	81, 672, 969
TaqI	TCGA	4 cut(s)	150, 520, 625, 876
TfiI	GAWTC	2 cut(s)	44, 232
Tru1I	TTAA	5 cut(s)	81, 126, 506, 642, 996
Tru9I	TTAA	5 cut(s)	81, 126, 506, 642, 996
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	2 cut(s)	50, 1064
TspDTI	ATGAA	6 cut(s)	57, 123, 201, 210, 626, 861
TspGWI	ACGGA	1 cut(s)	1029
TspRI	CASTG	1 cut(s)	403
Van91I	CCANNNNNTGG	1 cut(s)	957
VpaK11BI	GGWCC	1 cut(s)	619
XapI	RAATTY	7 cut(s)	70, 501, 513, 587, 656, 870, 1037
XhoI	CTCGAG	1 cut(s)	624
XspI	CTAG	2 cut(s)	164, 1097
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.