Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005047

Physical Location & Seq

Genomic Coordinates Forward (+)

14945455 .. 14947647

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G176100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAGAAGAAGACTGTCAATTATCCTCTCAAGTCTGCGGCAGATCATGATGAGGATGATGATGATCTTGTTGATCATCCTAAGGTTCCTGGATGGTTTTCTGAGCATTGTCCCATATGGCCAGGGCAAGCACACTTTCTGAAGGTAGAAAAAATCTTATTTCAAGGAAGGTCTGAGTACCAAAGTATGATGGTATTTCAGTCATCGGCATATGGCAAGGTTTTTGTTCTAGATGGAGCACTCCAACTGACTGAGAAAGATGAGTGTGCTTACCAAGAAATGATCACCCATCTTCCTCTTTGCTCCATTCAAAATCCAAACAAGGTATTACTCATTGGGGGTGGAGATGGCGGTATCTTAAGGGAAATTTCTCGACACTCTTCTGTTCAACAAATCGATATTTGCGAAATAGACACTATGTTGATTGATGTCTACAAGAAATATTTTCCTGGTATTGCTATTGGATATGAGGACCCTCGTGTGACCCTTCACGTTAAAGATGGGAATGCATTTATCAAGTCTGTACCAGAAGGAACATATGATGCGATAATCGTGGATGCATTTGATCCAATAAGGCCCGATCATGAGCTTCATGAAGGTCCTTTCTTTGAGTTGGTGGCGAAAGCTCTCCGACCGGGCGGAGTGATGTGCATCCAAGCAGAGAGCATATGGTTTCCTTCCTTAGACGTTGAACATCTGACGGCAAAGTGTCGCCAGAAATTCAAAGGCTCTGTTGATTATGCATGGACCATTGTTCCTGCATATCCAAGTGGGGTGATTGGCTTCTTGCTTTGCTCCACAGAGGGACAATTCGTTGACTTCAGAAATCCGGTCAACCCATTAGACCCCAACAACAATAGTTATGGGGTAGCAAAAGAACCCTTGAAATTTTACAACCCAGAGGTGCACTTTGCTGCATTTTGTTTGCCATCGTTTGCAAAGAAGGGGATGAATAATAATAAAAATAATAATGGGTGTAAAGTGAGCAGCAATGGAGTTGGTACGATTTCAGCTGATGATGAGGGCACAAAACAACAAGTGAATATTCAAGAAGAAGACGATATTATCGATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

359

Amino Acids

39.93

Weight (kDa)

4.99

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23820 AT1G23820 AT1G70310
fragaria_vesca	FvH4_4g34680
malus_domestica	MD13G1090400.v1.1 MD14G1183600.v1.1 MD16G1091000.v1.1
prunus_persica	Prupe.1G255300_v2.0.a1 Prupe.5G176100_v2.0.a1
pyrus_communis	pycom13g07870 pycom16g07770
rosa_chinensis	RchiOBHm_Chr4g0444031 RchiOBHm_Chr7g0193881
rosa_laevigata	RLG00000004238 RLG00000005863
rosa_multiflora	Rmu_sc0015522.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261760 Rroxscaffold_5G00384600
rosa_rugosa	Rorug04G0349100 Rorug07G0012500
rosa_samantha	Rh4AG409900 Rh4BG421000 Rh4CG435300 Rh4DG416200 Rh7AG139200 Rh7BG139600 Rh7CG143100 Rh7DG140700
rosa_wichuraiana	Rw4G035210 Rw7G011880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	3 cut(s)	38, 351, 639
AclWI	GGATC	1 cut(s)	560
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	3 cut(s)	366, 719, 887
AcuI	CTGAAG	2 cut(s)	161, 805
AfaI	GTAC	3 cut(s)	179, 525, 1003
AflII	CTTAAG	1 cut(s)	358
AgsI	TTSAA	7 cut(s)	164, 311, 389, 692, 724, 886, 1049
AjnI	CCWGG	3 cut(s)	88, 121, 448
AluBI	AGCT	3 cut(s)	589, 626, 1013
AluI	AGCT	3 cut(s)	589, 626, 1013
Alw21I	GWGCWC	2 cut(s)	241, 909
Alw44I	GTGCAC	1 cut(s)	905
AlwI	GGATC	1 cut(s)	560
AoxI	GGCC	2 cut(s)	119, 575
ApaLI	GTGCAC	1 cut(s)	905
ApeKI	GCWGC	2 cut(s)	914, 987
ApoI	RAATTY	3 cut(s)	366, 719, 887
AspS9I	GGNCC	4 cut(s)	472, 576, 599, 747
AsuC2I	CCSGG	1 cut(s)	636
AsuHPI	GGTGA	2 cut(s)	277, 787
AvaII	GGWCC	3 cut(s)	472, 599, 747
AxyI	CCTNAGG	1 cut(s)	81
BaeGI	GKGCMC	2 cut(s)	909, 1028
BalI	TGGCCA	1 cut(s)	121
BauI	CACGAG	1 cut(s)	477
BbsI	GAAGAC	2 cut(s)	17, 1062
Bbv12I	GWGCWC	2 cut(s)	241, 909
BbvI	GCAGC	2 cut(s)	901, 999
BccI	CCATC	7 cut(s)	87, 184, 227, 297, 341, 494, 937
BceAI	ACGGC	1 cut(s)	717
BciT130I	CCWGG	3 cut(s)	90, 123, 450
BclI	TGATCA	2 cut(s)	73, 282
BcnI	CCSGG	1 cut(s)	636
BfaI	CTAG	2 cut(s)	230, 1075
BfrI	CTTAAG	1 cut(s)	358
BisI	GCNGC	3 cut(s)	39, 915, 988
BlsI	GCNGC	3 cut(s)	40, 916, 989
Bme1390I	CCNGG	4 cut(s)	90, 123, 450, 636
Bme18I	GGWCC	3 cut(s)	472, 599, 747
BmgT120I	GGNCC	4 cut(s)	472, 576, 599, 747
BmiI	GGNNCC	2 cut(s)	87, 474
BmrFI	CCNGG	4 cut(s)	90, 123, 450, 636
BmsI	GCATC	3 cut(s)	532, 547, 660
BpiI	GAAGAC	2 cut(s)	17, 1062
BpuEI	CTTGAG	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	636
Bsa29I	ATCGAT	2 cut(s)	396, 1068
BsaBI	GATNNNNATC	2 cut(s)	63, 650
BsaJI	CCNNGG	1 cut(s)	122
BsaWI	WCCGGW	1 cut(s)	829
Bse21I	CCTNAGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	997
Bse8I	GATNNNNATC	2 cut(s)	63, 650
BseBI	CCWGG	3 cut(s)	90, 123, 450
BseCI	ATCGAT	2 cut(s)	396, 1068
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	6 cut(s)	61, 76, 98, 562, 651, 954
BseJI	GATNNNNATC	2 cut(s)	63, 650
BseMI	GCAATG	1 cut(s)	997
BseMII	CTCAG	3 cut(s)	93, 165, 243
BseSI	GKGCMC	2 cut(s)	909, 1028
BseXI	GCAGC	2 cut(s)	901, 999
Bsh1285I	CGRYCG	1 cut(s)	635
BshFI	GGCC	2 cut(s)	121, 577
BshVI	ATCGAT	2 cut(s)	396, 1068
BsiEI	CGRYCG	1 cut(s)	635
BsiHKAI	GWGCWC	2 cut(s)	241, 909
BsiSI	CCGG	2 cut(s)	635, 830
BslFI	GGGAC	2 cut(s)	96, 819
BsmFI	GGGAC	2 cut(s)	96, 819
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	121, 577
Bsp1286I	GDGCHC	3 cut(s)	241, 909, 1028
Bsp143I	GATC	7 cut(s)	43, 64, 73, 282, 565, 580, 1069
BspACI	CCGC	3 cut(s)	38, 351, 639
BspANI	GGCC	2 cut(s)	121, 577
BspCNI	CTCAG	3 cut(s)	94, 166, 244
BspDI	ATCGAT	2 cut(s)	396, 1068
BspHI	TCATGA	3 cut(s)	46, 583, 592
BspLI	GGNNCC	2 cut(s)	87, 474
BspPI	GGATC	1 cut(s)	560
BspTI	CTTAAG	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	997
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	7 cut(s)	43, 64, 73, 282, 565, 580, 1069
BssSI	CACGAG	1 cut(s)	477
Bst2BI	CACGAG	1 cut(s)	477
Bst2UI	CCWGG	3 cut(s)	90, 123, 450
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	385
BstAFI	CTTAAG	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	5 cut(s)	81, 102, 174, 252, 682
BstF5I	GGATG	6 cut(s)	61, 76, 98, 562, 651, 954
BstKTI	GATC	7 cut(s)	46, 67, 76, 285, 568, 583, 1072
BstMBI	GATC	7 cut(s)	43, 64, 73, 282, 565, 580, 1069
BstMCI	CGRYCG	1 cut(s)	635
BstNI	CCWGG	3 cut(s)	90, 123, 450
BstSCI	CCNGG	4 cut(s)	88, 121, 448, 634
BstSLI	GKGCMC	2 cut(s)	909, 1028
BstV1I	GCAGC	2 cut(s)	901, 999
BstV2I	GAAGAC	2 cut(s)	17, 1062
Bsu15I	ATCGAT	2 cut(s)	396, 1068
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	121, 577
BsuTUI	ATCGAT	2 cut(s)	396, 1068
BtsCI	GGATG	6 cut(s)	61, 76, 98, 562, 651, 954
Cac8I	GCNNGC	1 cut(s)	129
CciI	TCATGA	3 cut(s)	46, 583, 592
Cfr13I	GGNCC	4 cut(s)	472, 576, 599, 747
ClaI	ATCGAT	2 cut(s)	396, 1068
Csp6I	GTAC	3 cut(s)	178, 524, 1002
CviAII	CATG	4 cut(s)	47, 584, 593, 744
CviJI	RGCY	7 cut(s)	121, 577, 589, 626, 729, 783, 1013
CviKI_1	RGCY	7 cut(s)	121, 577, 589, 626, 729, 783, 1013
CviQI	GTAC	3 cut(s)	178, 524, 1002
DdeI	CTNAG	5 cut(s)	81, 102, 174, 252, 682
DpnI	GATC	7 cut(s)	45, 66, 75, 284, 567, 582, 1071
DpnII	GATC	7 cut(s)	43, 64, 73, 282, 565, 580, 1069
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	654
Eco47I	GGWCC	3 cut(s)	472, 599, 747
Eco57I	CTGAAG	2 cut(s)	161, 805
Eco81I	CCTNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	2 cut(s)	472, 599
EcoRII	CCWGG	3 cut(s)	88, 121, 448
EcoT22I	ATGCAT	3 cut(s)	511, 562, 745
FaeI	CATG	4 cut(s)	50, 587, 596, 747
FaqI	GGGAC	2 cut(s)	96, 819
FatI	CATG	4 cut(s)	46, 583, 592, 743
FauNDI	CATATG	4 cut(s)	116, 211, 538, 668
FbaI	TGATCA	2 cut(s)	73, 282
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	3 cut(s)	39, 915, 988
FokI	GGATG	6 cut(s)	63, 68, 105, 569, 638, 961
Fsp4HI	GCNGC	3 cut(s)	39, 915, 988
FspBI	CTAG	2 cut(s)	230, 1075
GluI	GCNGC	3 cut(s)	39, 915, 988
HaeIII	GGCC	2 cut(s)	121, 577
HapII	CCGG	2 cut(s)	635, 830
Hin1II	CATG	4 cut(s)	50, 587, 596, 747
HincII	GTYRAC	2 cut(s)	817, 835
HindII	GTYRAC	2 cut(s)	817, 835
HpaII	CCGG	2 cut(s)	635, 830
HphI	GGTGA	2 cut(s)	277, 787
Hpy166II	GTNNAC	4 cut(s)	433, 817, 835, 907
Hpy188I	TCNGA	6 cut(s)	103, 141, 175, 632, 699, 824
Hpy188III	TCNNGA	6 cut(s)	47, 230, 372, 584, 593, 1049
Hpy8I	GTNNAC	4 cut(s)	433, 817, 835, 907
HpyAV	CCTTC	7 cut(s)	136, 162, 497, 524, 590, 687, 937
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	2 cut(s)	492, 687
HpyCH4V	TGCA	8 cut(s)	509, 560, 651, 743, 761, 907, 917, 938
HpyF3I	CTNAG	5 cut(s)	81, 102, 174, 252, 682
HpySE526I	ACGT	2 cut(s)	492, 687
Hsp92II	CATG	4 cut(s)	50, 587, 596, 747
Ksp22I	TGATCA	2 cut(s)	73, 282
Kzo9I	GATC	7 cut(s)	43, 64, 73, 282, 565, 580, 1069
LmnI	GCTCC	3 cut(s)	236, 308, 800
Lsp1109I	GCAGC	2 cut(s)	901, 999
LweI	GCATC	3 cut(s)	532, 547, 660
MaeI	CTAG	2 cut(s)	230, 1075
MaeII	ACGT	2 cut(s)	492, 687
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	7 cut(s)	45, 66, 75, 284, 567, 582, 1071
MboI	GATC	7 cut(s)	43, 64, 73, 282, 565, 580, 1069
MboII	GAAGA	6 cut(s)	19, 22, 284, 372, 1064, 1067
MhlI	GDGCHC	3 cut(s)	241, 909, 1028
MlsI	TGGCCA	1 cut(s)	121
MluCI	AATT	5 cut(s)	19, 366, 719, 809, 887
MluNI	TGGCCA	1 cut(s)	121
MmeI	TCCRAC	2 cut(s)	268, 655
MnlI	CCTC	8 cut(s)	36, 46, 306, 463, 486, 796, 895, 1015
Mox20I	TGGCCA	1 cut(s)	121
Mph1103I	ATGCAT	3 cut(s)	511, 562, 745
MscI	TGGCCA	1 cut(s)	121
MseI	TTAA	2 cut(s)	359, 495
Msp20I	TGGCCA	1 cut(s)	121
MspA1I	CMGCKG	1 cut(s)	1013
MspCI	CTTAAG	1 cut(s)	358
MspI	CCGG	2 cut(s)	635, 830
MspR9I	CCNGG	4 cut(s)	90, 123, 450, 636
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	3 cut(s)	90, 123, 450
NciI	CCSGG	1 cut(s)	636
NdeI	CATATG	4 cut(s)	116, 211, 538, 668
NdeII	GATC	7 cut(s)	43, 64, 73, 282, 565, 580, 1069
NlaIII	CATG	4 cut(s)	50, 587, 596, 747
NlaIV	GGNNCC	2 cut(s)	87, 474
NmuCI	GTSAC	1 cut(s)	481
NsiI	ATGCAT	3 cut(s)	511, 562, 745
PagI	TCATGA	3 cut(s)	46, 583, 592
PcsI	WCGNNNNNNNCGW	2 cut(s)	402, 1065
PctI	GAATGC	1 cut(s)	511
PfoI	TCCNGGA	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	40, 916, 989
PpuMI	RGGWCCY	2 cut(s)	472, 599
Psp5II	RGGWCCY	2 cut(s)	472, 599
Psp6I	CCWGG	3 cut(s)	88, 121, 448
PspGI	CCWGG	3 cut(s)	88, 121, 448
PspN4I	GGNNCC	2 cut(s)	87, 474
PspPI	GGNCC	4 cut(s)	472, 576, 599, 747
PspPPI	RGGWCCY	2 cut(s)	472, 599
PvuII	CAGCTG	1 cut(s)	1013
RsaI	GTAC	3 cut(s)	179, 525, 1003
RsaNI	GTAC	3 cut(s)	178, 524, 1002
SaqAI	TTAA	2 cut(s)	359, 495
SatI	GCNGC	3 cut(s)	39, 915, 988
Sau3AI	GATC	7 cut(s)	43, 64, 73, 282, 565, 580, 1069
Sau96I	GGNCC	4 cut(s)	472, 576, 599, 747
ScrFI	CCNGG	4 cut(s)	90, 123, 450, 636
SduI	GDGCHC	3 cut(s)	241, 909, 1028
SfaNI	GCATC	3 cut(s)	532, 547, 660
SinI	GGWCC	3 cut(s)	472, 599, 747
SmlI	CTYRAG	2 cut(s)	29, 358
SmoI	CTYRAG	2 cut(s)	29, 358
Sse9I	AATT	5 cut(s)	19, 366, 719, 809, 887
SsiI	CCGC	3 cut(s)	38, 351, 639
SspI	AATATT	2 cut(s)	443, 1045
SspMI	CTAG	2 cut(s)	230, 1075
StyD4I	CCNGG	4 cut(s)	88, 121, 448, 634
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	2 cut(s)	495, 690
TaqI	TCGA	3 cut(s)	373, 396, 1068
TasI	AATT	5 cut(s)	19, 366, 719, 809, 887
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	359, 495
Tru9I	TTAA	2 cut(s)	359, 495
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	2 cut(s)	914, 987
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	3 cut(s)	581, 609, 965
Vha464I	CTTAAG	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	905
VpaK11BI	GGWCC	3 cut(s)	472, 599, 747
XapI	RAATTY	3 cut(s)	366, 719, 887
XbaI	TCTAGA	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	2 cut(s)	230, 1075
Zsp2I	ATGCAT	3 cut(s)	511, 562, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.