Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005047

Physical Location & Seq

Genomic Coordinates Forward (+)

32320364 .. 32323819

Gene Structure 3456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCCGAGGACGGTGTCGTGGGGTTGGGTGATTTTCCGGTGAAGAGGGCGAGGGAGGAGGAAGAGAACGGTGGGTTGACAGCTGCGGCGGCTATGGAGACCGAGAGTGGGAAAGAGCCGGATTGTATCTCTGGTGTTATTCCTGGGTGGTTCTCTGAGATTAGCCCAATGTGGCCTGGAGAAGCACACTCCTTGAAGATAGAGAAAATTTTGTTTCAAGGGAAATCGGACTATCAGAATGTGATGGTCTTCCAGTCATCGACCTATGGGAAGGTTCTTGTCTTGGATGGGGTGATTCAGCTGACAGAAAGAGATGAATGTGCCTATCAAGAAATGATTACTCATCTTCCTCTCTGCTCAATTCCAAACCCGAAGAAGGTTTTGGTTATCGGTGGAGGAGATGGTGGAGTACTGCGGGAGGTGGCTCGTCATTCTTCTGTTGAGAAAATAGATATATGTGAGATTGATAAGATGGTTGTTGATGTTTCGAAACAGTTTTTCCCCCGCGTAGCTATTGGATACGAAGATCCCAGGGTGACCCTTCATATTGGTGATGGAGTTGCATTTTTAAAGGCTGTTCCAGCAGGAACTTATGATGCAGTGATTGTGGACTCTTCTGATCCCATAGGACCTGCACAAGAGCTTTTTGAGAAGCCGTTCTTCCAGTCGGTAGCAAACGCTCTCTGTCCAGGAGGAGTTGTGTGCACCCAGGCAGAGAGTATATGGCTTCACATGCACATCATTGAGGATATTGTGTCAAACTGCCACCAGATATTCAAAGGCTCTGTCAACTACGCATGGACAACAGTCCCTACATATCCAAGTGGAGTGATTGGTTTTATGCTCTGTTCTACTGAGGGACCTCCTGTTGATTTTAAGCACCCTGTGAATCCTTTGTCTGAAAATGACGGTTCCAAAGACCCCTTGAAATTTTATAACTCTGAGATTCACACTGCTGCATTCTGCCTACCATCTTTTGCTAAGAAGGTGATTGAATCGAAAGCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004766 GO:0005575 GO:0005623 GO:0005886 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044464 GO:0071704 GO:0071944 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

337

Amino Acids

36.54

Weight (kDa)

4.87

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	49 - 103	3.1e-24	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	106 - 293	2.2e-79	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23820 AT1G23820 AT1G70310
fragaria_vesca	FvH4_4g34680
malus_domestica	MD13G1090400.v1.1 MD14G1183600.v1.1 MD16G1091000.v1.1
prunus_persica	Prupe.1G255300_v2.0.a1 Prupe.5G176100_v2.0.a1
pyrus_communis	pycom13g07870 pycom16g07770
rosa_chinensis	RchiOBHm_Chr4g0444031 RchiOBHm_Chr7g0193881
rosa_laevigata	RLG00000004238 RLG00000005863
rosa_multiflora	Rmu_sc0015522.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261760 Rroxscaffold_5G00384600
rosa_rugosa	Rorug04G0349100 Rorug07G0012500
rosa_samantha	Rh4AG409900 Rh4BG421000 Rh4CG435300 Rh4DG416200 Rh7AG139200 Rh7BG139600 Rh7CG143100 Rh7DG140700
rosa_wichuraiana	Rw4G035210 Rw7G011880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
Acc36I	ACCTGC	1 cut(s)	640
AccII	CGCG	1 cut(s)	507
AciI	CCGC	4 cut(s)	86, 89, 415, 505
AclWI	GGATC	2 cut(s)	521, 614
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	207, 929
AdeI	CACNNNGTG	1 cut(s)	886
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	108, 376
AgsI	TTSAA	5 cut(s)	196, 218, 778, 928, 995
AjnI	CCWGG	5 cut(s)	142, 175, 530, 688, 708
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	4 cut(s)	83, 301, 512, 643
AluI	AGCT	4 cut(s)	83, 301, 512, 643
Alw21I	GWGCWC	1 cut(s)	707
Alw26I	GTCTC	1 cut(s)	92
Alw44I	GTGCAC	1 cut(s)	703
AlwI	GGATC	2 cut(s)	521, 614
AoxI	GGCC	2 cut(s)	3, 173
ApaLI	GTGCAC	1 cut(s)	703
ApeKI	GCWGC	2 cut(s)	83, 956
ApoI	RAATTY	2 cut(s)	207, 929
ArsI	GACNNNNNNTTYG	2 cut(s)	771, 803
Asp700I	GAANNNNTTC	1 cut(s)	656
AspS9I	GGNCC	2 cut(s)	629, 860
AsuHPI	GGTGA	6 cut(s)	41, 52, 304, 547, 563, 1000
AsuII	TTCGAA	1 cut(s)	488
AvaII	GGWCC	2 cut(s)	629, 860
BaeGI	GKGCMC	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	707
BbvI	GCAGC	2 cut(s)	70, 943
BccI	CCATC	6 cut(s)	238, 281, 395, 466, 548, 979
BceAI	ACGGC	1 cut(s)	640
BciT130I	CCWGG	5 cut(s)	144, 177, 532, 690, 710
BciVI	GTATCC	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	640
BfuI	GTATCC	1 cut(s)	512
BisI	GCNGC	4 cut(s)	84, 87, 90, 957
BlsI	GCNGC	4 cut(s)	85, 88, 91, 958
BmcAI	AGTACT	1 cut(s)	411
Bme1390I	CCNGG	5 cut(s)	144, 177, 532, 690, 710
Bme18I	GGWCC	2 cut(s)	629, 860
BmgT120I	GGNCC	2 cut(s)	629, 860
BmiI	GGNNCC	2 cut(s)	861, 913
BmrFI	CCNGG	5 cut(s)	144, 177, 532, 690, 710
BmsI	GCATC	1 cut(s)	586
BoxI	GACNNNNGTC	1 cut(s)	806
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	5 cut(s)	6, 143, 530, 531, 708
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 376
Bse1I	ACTGG	2 cut(s)	253, 664
BseBI	CCWGG	5 cut(s)	144, 177, 532, 690, 710
BseDI	CCNNGG	5 cut(s)	6, 143, 530, 531, 708
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	108, 376
BseMII	CTCAG	3 cut(s)	147, 846, 933
BseNI	ACTGG	2 cut(s)	253, 664
BseRI	GAGGAG	3 cut(s)	71, 411, 708
BseSI	GKGCMC	1 cut(s)	707
BseXI	GCAGC	2 cut(s)	70, 943
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	5, 175
BsiHKAI	GWGCWC	1 cut(s)	707
BsiSI	CCGG	2 cut(s)	38, 119
BslFI	GGGAC	2 cut(s)	794, 873
BslI	CCNNNNNNNGG	2 cut(s)	108, 376
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	2 cut(s)	794, 873
BsmI	GAATGC	1 cut(s)	959
BsnI	GGCC	2 cut(s)	5, 175
Bso31I	GGTCTC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp143I	GATC	2 cut(s)	526, 619
BspACI	CCGC	4 cut(s)	86, 89, 415, 505
BspANI	GGCC	2 cut(s)	5, 175
BspCNI	CTCAG	3 cut(s)	148, 847, 934
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	861, 913
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	2 cut(s)	521, 614
BspT104I	TTCGAA	1 cut(s)	488
BspTNI	GGTCTC	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	253, 664
BssECI	CCNNGG	5 cut(s)	6, 143, 530, 531, 708
BssMI	GATC	2 cut(s)	526, 619
Bst2UI	CCWGG	5 cut(s)	144, 177, 532, 690, 710
Bst4CI	ACNGT	6 cut(s)	14, 71, 495, 808, 911, 1008
Bst6I	CTCTTC	3 cut(s)	38, 57, 619
BstBI	TTCGAA	1 cut(s)	488
BstDEI	CTNAG	4 cut(s)	156, 855, 942, 981
BstEII	GGTNACC	1 cut(s)	535
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	507
BstKTI	GATC	2 cut(s)	529, 622
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	526, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 581, 733
BstNI	CCWGG	5 cut(s)	144, 177, 532, 690, 710
BstNSI	RCATGY	1 cut(s)	736
BstPAI	GACNNNNGTC	1 cut(s)	806
BstPI	GGTNACC	1 cut(s)	535
BstSCI	CCNGG	5 cut(s)	142, 175, 530, 688, 708
BstSLI	GKGCMC	1 cut(s)	707
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	2 cut(s)	70, 943
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	2 cut(s)	5, 175
BtsCI	GGATG	1 cut(s)	292
BtsI	GCAGTG	2 cut(s)	606, 951
BtsIMutI	CAGTG	2 cut(s)	606, 951
BveI	ACCTGC	1 cut(s)	640
Cfr13I	GGNCC	2 cut(s)	629, 860
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	2 cut(s)	733, 798
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	4 cut(s)	156, 855, 942, 981
DpnI	GATC	2 cut(s)	528, 621
DpnII	GATC	2 cut(s)	526, 619
DraI	TTTAAA	1 cut(s)	570
DraIII	CACNNNGTG	1 cut(s)	886
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	38, 57, 619
EarI	CTCTTC	3 cut(s)	38, 57, 619
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	2 cut(s)	629, 860
Eco91I	GGTNACC	1 cut(s)	535
EcoO109I	RGGNCCY	2 cut(s)	629, 860
EcoO65I	GGTNACC	1 cut(s)	535
EcoRII	CCWGG	5 cut(s)	142, 175, 530, 688, 708
FaeI	CATG	2 cut(s)	736, 801
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	2 cut(s)	794, 873
FatI	CATG	2 cut(s)	732, 797
FauI	CCCGC	2 cut(s)	408, 512
Fnu4HI	GCNGC	4 cut(s)	84, 87, 90, 957
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	4 cut(s)	84, 87, 90, 957
GluI	GCNGC	4 cut(s)	84, 87, 90, 957
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	5, 175
HapII	CCGG	2 cut(s)	38, 119
Hin1II	CATG	2 cut(s)	736, 801
HincII	GTYRAC	2 cut(s)	78, 790
HindII	GTYRAC	2 cut(s)	78, 790
HinfI	GANTC	5 cut(s)	295, 611, 889, 946, 995
HpaII	CCGG	2 cut(s)	38, 119
HphI	GGTGA	6 cut(s)	41, 52, 304, 547, 563, 1000
Hpy166II	GTNNAC	4 cut(s)	78, 610, 705, 790
Hpy188I	TCNGA	6 cut(s)	157, 229, 237, 619, 901, 943
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	4 cut(s)	78, 610, 705, 790
HpyAV	CCTTC	4 cut(s)	265, 370, 551, 979
HpyCH4III	ACNGT	6 cut(s)	14, 71, 495, 808, 911, 1008
HpyCH4V	TGCA	6 cut(s)	563, 599, 635, 705, 736, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 581, 733
HpyF3I	CTNAG	4 cut(s)	156, 855, 942, 981
Hsp92II	CATG	2 cut(s)	736, 801
Kzo9I	GATC	2 cut(s)	526, 619
Lsp1109I	GCAGC	2 cut(s)	70, 943
LweI	GCATC	1 cut(s)	586
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	2 cut(s)	528, 621
MboI	GATC	2 cut(s)	526, 619
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	707
MluCI	AATT	3 cut(s)	207, 360, 929
MlyI	GAGTC	1 cut(s)	605
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	2 cut(s)	569, 876
MslI	CAYNNNNRTG	1 cut(s)	549
MspA1I	CMGCKG	2 cut(s)	83, 301
MspI	CCGG	2 cut(s)	38, 119
MspR9I	CCNGG	5 cut(s)	144, 177, 532, 690, 710
Mva1269I	GAATGC	1 cut(s)	959
MvaI	CCWGG	5 cut(s)	144, 177, 532, 690, 710
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	3 cut(s)	89, 581, 733
NdeII	GATC	2 cut(s)	526, 619
NlaIII	CATG	2 cut(s)	736, 801
NlaIV	GGNNCC	2 cut(s)	861, 913
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	535
NspI	RCATGY	1 cut(s)	736
NspV	TTCGAA	1 cut(s)	488
PasI	CCCWGGG	1 cut(s)	531
PctI	GAATGC	1 cut(s)	959
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	4 cut(s)	295, 889, 946, 995
PflFI	GACNNNGTC	1 cut(s)	14
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	4 cut(s)	85, 88, 91, 958
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
PpuMI	RGGWCCY	2 cut(s)	629, 860
PshAI	GACNNNNGTC	1 cut(s)	806
PsiI	TTATAA	1 cut(s)	936
Psp5II	RGGWCCY	2 cut(s)	629, 860
Psp6I	CCWGG	5 cut(s)	142, 175, 530, 688, 708
PspEI	GGTNACC	1 cut(s)	535
PspGI	CCWGG	5 cut(s)	142, 175, 530, 688, 708
PspN4I	GGNNCC	2 cut(s)	861, 913
PspPI	GGNCC	2 cut(s)	629, 860
PspPPI	RGGWCCY	2 cut(s)	629, 860
PsuI	RGATCY	1 cut(s)	526
PsyI	GACNNNGTC	1 cut(s)	14
PvuII	CAGCTG	2 cut(s)	83, 301
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	2 cut(s)	569, 876
SatI	GCNGC	4 cut(s)	84, 87, 90, 957
Sau3AI	GATC	2 cut(s)	526, 619
Sau96I	GGNCC	2 cut(s)	629, 860
ScaI	AGTACT	1 cut(s)	411
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	5 cut(s)	144, 177, 532, 690, 710
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	1 cut(s)	586
SfuI	TTCGAA	1 cut(s)	488
SinI	GGWCC	2 cut(s)	629, 860
SmiMI	CAYNNNNRTG	1 cut(s)	549
Sse9I	AATT	3 cut(s)	207, 360, 929
SsiI	CCGC	4 cut(s)	86, 89, 415, 505
StyD4I	CCNGG	5 cut(s)	142, 175, 530, 688, 708
TaaI	ACNGT	6 cut(s)	14, 71, 495, 808, 911, 1008
TaqI	TCGA	3 cut(s)	260, 488, 998
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	3 cut(s)	207, 360, 929
TatI	WGTACW	1 cut(s)	409
TauI	GCSGC	2 cut(s)	89, 92
TfiI	GAWTC	4 cut(s)	295, 889, 946, 995
Tru1I	TTAA	2 cut(s)	569, 876
Tru9I	TTAA	2 cut(s)	569, 876
TscAI	CASTG	2 cut(s)	606, 958
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	2 cut(s)	83, 956
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	2 cut(s)	330, 533
TspRI	CASTG	2 cut(s)	606, 958
Tth111I	GACNNNGTC	1 cut(s)	14
VneI	GTGCAC	1 cut(s)	703
VpaK11BI	GGWCC	2 cut(s)	629, 860
XapI	RAATTY	2 cut(s)	207, 929
XceI	RCATGY	1 cut(s)	736
XmnI	GAANNNNTTC	1 cut(s)	656
ZrmI	AGTACT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.