Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005047

Physical Location & Seq

Genomic Coordinates Forward (+)

11277681 .. 11280497

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G011880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCATGAATCTGCAGCATTACTATGCGGTACAAATTTGTACGTTAAAAAGCCAAAAGAAGATGTTGATGATGAACTACTTAGGGCGGTTAATGGTGATCTCAGCTATGATATCGACTCTGCCCCGCTAGTCTCAGCCGGAATTGATGATGAACACGATGAAGAACCTGTGGATGATCTTGTAAATCATCCTGAGATTCCTGGATGGTTTTCTGAGTATTGTCCAGTTTGGCCAGGGCAAGCACACTTTTTGAAGGTAGAAAAGATCTTATTTCAAGGGAAGTCCCAGTACCAAAGTATGATGGTATTTCAGTCATCAGCATATGGGAAGGTTTTTGTTCTGGATGGAGCCCTGCAACTCACTGAAAAGGATGAGTGTGCTTACCAAGAAATGATTACACATCTTCCTCTTTGCTCCATTCCAAACCCAAAAAAGGTATTACTCATTGGAGGAGGAGATGGCGGAATTTTAAGGGAAATTTCTCGACACTCTTCTGTTGAGCAGATTGATATATGCGAAATAGACACCATGTTAGTTGATATCTACAAGAAATTTTTTCCTGATGTTGCTATTGGATACAAGGACCCTCGGGTAACTCTTCATGTTAAAGATGGTACTGAATTTTGTAAGTACGTTCCACAAGGAACATATGATGCAATAATAGTGGACGCATTTGACCCAATAAGGCCTGGTCATGAGCTTCTTGATGATGAGACTCCCTTCTTTGAACTGGTGAGAAAAGCTCTCCGCCCTGGAGGAGTCATGTGCATCCAAGCAGAAAGCATATGGTTTCGCTCCTTCCAGGTTGATGAACTCGTTGCAAAATGTCGCCAAATTTTCGAAGGCTCTGTTGACTATGCTTGGACAATTGTTCCAGCATATCCAAGTGGGGTGATTGGTTTCTTGCTTTGCTCCAAGGAGGGGTCATACGTGAACTTCAGAAATCCTATCAACCCGATTAACCCCAACAATAGTTACGGAGTATCAAAAGAGCCCTTGAAATTTTACAATTCAGAGGTACACATGGCTGCATTTTGTTTGCCATCGTTTGCGAAGAAGGTGACTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

356

Amino Acids

39.92

Weight (kDa)

4.81

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	68 - 122	1.9e-20	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	125 - 312	4.5e-63	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23820 AT1G23820 AT1G70310
fragaria_vesca	FvH4_4g34680
malus_domestica	MD13G1090400.v1.1 MD14G1183600.v1.1 MD16G1091000.v1.1
prunus_persica	Prupe.1G255300_v2.0.a1 Prupe.5G176100_v2.0.a1
pyrus_communis	pycom13g07870 pycom16g07770
rosa_chinensis	RchiOBHm_Chr4g0444031 RchiOBHm_Chr7g0193881
rosa_laevigata	RLG00000004238 RLG00000005863
rosa_multiflora	Rmu_sc0015522.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261760 Rroxscaffold_5G00384600
rosa_rugosa	Rorug04G0349100 Rorug07G0012500
rosa_samantha	Rh4AG409900 Rh4BG421000 Rh4CG435300 Rh4DG416200 Rh7AG139200 Rh7BG139600 Rh7CG143100 Rh7DG140700
rosa_wichuraiana	Rw4G035210 Rw7G011880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	27, 86, 125, 462, 748
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	7 cut(s)	34, 465, 477, 551, 620, 834, 1001
AcuI	CTGAAG	1 cut(s)	922
AfaI	GTAC	6 cut(s)	31, 41, 290, 616, 632, 1020
AfiI	CCNNNNNNNGG	2 cut(s)	433, 921
AgsI	TTSAA	4 cut(s)	253, 275, 728, 1000
AjnI	CCWGG	5 cut(s)	199, 232, 688, 751, 801
AluBI	AGCT	3 cut(s)	105, 700, 743
AluI	AGCT	3 cut(s)	105, 700, 743
Alw26I	GTCTC	2 cut(s)	136, 707
Ama87I	CYCGRG	1 cut(s)	588
AoxI	GGCC	2 cut(s)	230, 686
ApeKI	GCWGC	2 cut(s)	14, 1028
ApoI	RAATTY	7 cut(s)	34, 465, 477, 551, 620, 834, 1001
AspS9I	GGNCC	1 cut(s)	583
AsuHPI	GGTGA	3 cut(s)	107, 745, 904
AsuII	TTCGAA	1 cut(s)	840
AvaI	CYCGRG	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	583
BalI	TGGCCA	1 cut(s)	232
BanII	GRGCYC	2 cut(s)	352, 996
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BbvI	GCAGC	2 cut(s)	26, 1015
BccI	CCATC	6 cut(s)	198, 295, 338, 452, 605, 1051
BciT130I	CCWGG	5 cut(s)	201, 234, 690, 753, 803
BciVI	GTATCC	1 cut(s)	569
BcoDI	GTCTC	2 cut(s)	136, 707
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	569
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	2 cut(s)	15, 1029
BlsI	GCNGC	2 cut(s)	16, 1030
Bme1390I	CCNGG	5 cut(s)	201, 234, 690, 753, 803
Bme18I	GGWCC	1 cut(s)	583
BmeT110I	CYCGRG	1 cut(s)	588
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	2 cut(s)	349, 585
BmrFI	CCNGG	5 cut(s)	201, 234, 690, 753, 803
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	2 cut(s)	643, 777
BmuI	ACTGGG	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	727, 759
BpmI	CTGGAG	1 cut(s)	774
Bpu14I	TTCGAA	1 cut(s)	840
BsaAI	YACGTR	1 cut(s)	931
BsaJI	CCNNGG	4 cut(s)	233, 587, 751, 915
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 921
Bse1I	ACTGG	3 cut(s)	224, 286, 735
BseBI	CCWGG	5 cut(s)	201, 234, 690, 753, 803
BseDI	CCNNGG	4 cut(s)	233, 587, 751, 915
BseGI	GGATG	6 cut(s)	178, 187, 209, 349, 376, 768
BseLI	CCNNNNNNNGG	2 cut(s)	433, 921
BseMII	CTCAG	4 cut(s)	115, 147, 183, 204
BseNI	ACTGG	3 cut(s)	224, 286, 735
BseRI	GAGGAG	3 cut(s)	465, 468, 771
BseXI	GCAGC	2 cut(s)	26, 1015
BshFI	GGCC	2 cut(s)	232, 688
BsiHKCI	CYCGRG	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	2 cut(s)	433, 921
BsmAI	GTCTC	2 cut(s)	136, 707
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	232, 688
BsoBI	CYCGRG	1 cut(s)	588
Bsp119I	TTCGAA	1 cut(s)	840
Bsp1286I	GDGCHC	2 cut(s)	352, 996
Bsp143I	GATC	3 cut(s)	97, 175, 264
BspACI	CCGC	5 cut(s)	27, 86, 125, 462, 748
BspANI	GGCC	2 cut(s)	232, 688
BspCNI	CTCAG	4 cut(s)	114, 146, 184, 205
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	2 cut(s)	349, 585
BspMAI	CTGCAG	1 cut(s)	16
BspT104I	TTCGAA	1 cut(s)	840
BsrI	ACTGG	3 cut(s)	224, 286, 735
BssECI	CCNNGG	4 cut(s)	233, 587, 751, 915
BssMI	GATC	3 cut(s)	97, 175, 264
BssT1I	CCWWGG	1 cut(s)	915
Bst2UI	CCWGG	5 cut(s)	201, 234, 690, 753, 803
Bst6I	CTCTTC	2 cut(s)	496, 603
BstBAI	YACGTR	1 cut(s)	931
BstBI	TTCGAA	1 cut(s)	840
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	5 cut(s)	80, 101, 133, 192, 213
BstF5I	GGATG	6 cut(s)	178, 187, 209, 349, 376, 768
BstKTI	GATC	3 cut(s)	100, 178, 267
BstMAI	GTCTC	2 cut(s)	136, 707
BstMBI	GATC	3 cut(s)	97, 175, 264
BstNI	CCWGG	5 cut(s)	201, 234, 690, 753, 803
BstSCI	CCNGG	5 cut(s)	199, 232, 688, 751, 801
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	26, 1015
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	569
BsuRI	GGCC	2 cut(s)	232, 688
BtsCI	GGATG	6 cut(s)	178, 187, 209, 349, 376, 768
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	240
CciI	TCATGA	1 cut(s)	694
Cfr13I	GGNCC	1 cut(s)	583
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	6 cut(s)	30, 40, 289, 615, 631, 1019
CspCI	CAANNNNNGTGG	2 cut(s)	645, 680
CviAII	CATG	6 cut(s)	5, 529, 602, 695, 763, 1024
CviQI	GTAC	6 cut(s)	30, 40, 289, 615, 631, 1019
DdeI	CTNAG	5 cut(s)	80, 101, 133, 192, 213
DpnI	GATC	3 cut(s)	99, 177, 266
DpnII	GATC	3 cut(s)	97, 175, 264
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	496, 603
EarI	CTCTTC	2 cut(s)	496, 603
EciI	GGCGGA	2 cut(s)	477, 737
Eco130I	CCWWGG	1 cut(s)	915
Eco147I	AGGCCT	1 cut(s)	688
Eco24I	GRGCYC	2 cut(s)	352, 996
Eco32I	GATATC	2 cut(s)	112, 541
Eco47I	GGWCC	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	922
Eco88I	CYCGRG	1 cut(s)	588
EcoO109I	RGGNCCY	1 cut(s)	583
EcoRII	CCWGG	5 cut(s)	199, 232, 688, 751, 801
EcoRV	GATATC	2 cut(s)	112, 541
EcoT14I	CCWWGG	1 cut(s)	915
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	352, 996
ErhI	CCWWGG	1 cut(s)	915
FaeI	CATG	6 cut(s)	8, 532, 605, 698, 766, 1027
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	6 cut(s)	4, 528, 601, 694, 762, 1023
FauI	CCCGC	1 cut(s)	132
FauNDI	CATATG	3 cut(s)	322, 649, 785
Fnu4HI	GCNGC	2 cut(s)	15, 1029
FokI	GGATG	6 cut(s)	174, 185, 216, 356, 383, 755
FriOI	GRGCYC	2 cut(s)	352, 996
Fsp4HI	GCNGC	2 cut(s)	15, 1029
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	2 cut(s)	15, 1029
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	2 cut(s)	232, 688
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	677
Hin1II	CATG	6 cut(s)	8, 532, 605, 698, 766, 1027
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HinfI	GANTC	5 cut(s)	8, 116, 196, 715, 759
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	3 cut(s)	107, 745, 904
Hpy166II	GTNNAC	4 cut(s)	667, 853, 934, 1021
Hpy188I	TCNGA	3 cut(s)	214, 941, 1015
Hpy188III	TCNNGA	6 cut(s)	191, 341, 483, 560, 695, 704
Hpy8I	GTNNAC	4 cut(s)	667, 853, 934, 1021
HpyAV	CCTTC	6 cut(s)	247, 322, 730, 808, 836, 1051
HpyCH4IV	ACGT	3 cut(s)	42, 633, 930
HpyCH4V	TGCA	7 cut(s)	4, 14, 355, 656, 768, 821, 1031
HpyF3I	CTNAG	5 cut(s)	80, 101, 133, 192, 213
HpySE526I	ACGT	3 cut(s)	42, 633, 930
Hsp92II	CATG	6 cut(s)	8, 532, 605, 698, 766, 1027
Kzo9I	GATC	3 cut(s)	97, 175, 264
LmnI	GCTCC	4 cut(s)	347, 419, 800, 917
Lsp1109I	GCAGC	2 cut(s)	26, 1015
LweI	GCATC	2 cut(s)	643, 777
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	3 cut(s)	42, 633, 930
MaeIII	GTNAC	3 cut(s)	592, 974, 1060
MalI	GATC	3 cut(s)	99, 177, 266
MboI	GATC	3 cut(s)	97, 175, 264
MboII	GAAGA	6 cut(s)	71, 173, 395, 483, 590, 1066
MfeI	CAATTG	1 cut(s)	867
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	2 cut(s)	352, 996
MlsI	TGGCCA	1 cut(s)	232
MluNI	TGGCCA	1 cut(s)	232
MlyI	GAGTC	3 cut(s)	110, 709, 768
MnlI	CCTC	7 cut(s)	417, 443, 446, 597, 749, 913, 1009
Mox20I	TGGCCA	1 cut(s)	232
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	232
MseI	TTAA	5 cut(s)	45, 90, 470, 606, 960
MslI	CAYNNNNRTG	1 cut(s)	22
Msp20I	TGGCCA	1 cut(s)	232
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	5 cut(s)	201, 234, 690, 753, 803
MunI	CAATTG	1 cut(s)	867
MvaI	CCWGG	5 cut(s)	201, 234, 690, 753, 803
NdeI	CATATG	3 cut(s)	322, 649, 785
NdeII	GATC	3 cut(s)	97, 175, 264
NlaIII	CATG	6 cut(s)	8, 532, 605, 698, 766, 1027
NlaIV	GGNNCC	2 cut(s)	349, 585
NmuCI	GTSAC	1 cut(s)	1060
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	840
PagI	TCATGA	1 cut(s)	694
PceI	AGGCCT	1 cut(s)	688
PfeI	GAWTC	2 cut(s)	8, 196
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	16, 1030
PleI	GAGTC	3 cut(s)	110, 709, 767
PpsI	GAGTC	3 cut(s)	110, 709, 767
Ppu21I	YACGTR	1 cut(s)	931
PpuMI	RGGWCCY	1 cut(s)	583
Psp5II	RGGWCCY	1 cut(s)	583
Psp6I	CCWGG	5 cut(s)	199, 232, 688, 751, 801
PspGI	CCWGG	5 cut(s)	199, 232, 688, 751, 801
PspN4I	GGNNCC	2 cut(s)	349, 585
PspPI	GGNCC	1 cut(s)	583
PspPPI	RGGWCCY	1 cut(s)	583
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	6 cut(s)	31, 41, 290, 616, 632, 1020
RsaNI	GTAC	6 cut(s)	30, 40, 289, 615, 631, 1019
RseI	CAYNNNNRTG	1 cut(s)	22
SaqAI	TTAA	5 cut(s)	45, 90, 470, 606, 960
SatI	GCNGC	2 cut(s)	15, 1029
Sau3AI	GATC	3 cut(s)	97, 175, 264
Sau96I	GGNCC	1 cut(s)	583
SchI	GAGTC	3 cut(s)	110, 709, 768
ScrFI	CCNGG	5 cut(s)	201, 234, 690, 753, 803
SduI	GDGCHC	2 cut(s)	352, 996
SfaNI	GCATC	2 cut(s)	643, 777
SfcI	CTRYAG	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	840
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	22
SseBI	AGGCCT	1 cut(s)	688
SsiI	CCGC	5 cut(s)	27, 86, 125, 462, 748
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	688
StyD4I	CCNGG	5 cut(s)	199, 232, 688, 751, 801
StyI	CCWWGG	1 cut(s)	915
TaiI	ACGT	3 cut(s)	45, 636, 933
TaqI	TCGA	3 cut(s)	114, 484, 840
TfiI	GAWTC	2 cut(s)	8, 196
Tru1I	TTAA	5 cut(s)	45, 90, 470, 606, 960
Tru9I	TTAA	5 cut(s)	45, 90, 470, 606, 960
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	1060
TseI	GCWGC	2 cut(s)	14, 1028
Tsp45I	GTSAC	1 cut(s)	1060
TspDTI	ATGAA	6 cut(s)	21, 87, 165, 174, 590, 825
TspGWI	ACGGA	1 cut(s)	993
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	7 cut(s)	34, 465, 477, 551, 620, 834, 1001
XspI	CTAG	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.