Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015522.1

Orthogroup ID

OG0005047

Physical Location & Seq

Genomic Coordinates Reverse (-)

16073 .. 19466

Gene Structure 3394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015522.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggccgaagacggtgtggtggggtccgctgattttccggcgaagcggcccagagaggaggaagagaactgtgtctcgtcagctgcggcggctatggagaccgagactgccaaagacccggattgcgtctctggtgtcattcctggctggttctctgagattagcccaatgtggcccggagaagcacactccttgaagatagagaaaattttgtttcaagggaaatcggactatcagaatgtgatggtcttccagtcatcaacctatggaaaggttctcgtcctggatggggtgattcagctgaccgaaagggatgaatgtgcctatcaagaaatgattactcatcttcctctctgctcaattccaaaccccaagaaggttttggttatcggtggaggagacggtggtgtactgcgggaagtggctcgccattcttctgttgagcaaatagatatatgtgagattgataagatggttgttgacgttttggttatcggtggaggagacggtggtgtactgcgggaagtggctcgccattcttctgttgagcaaatagatatatgtgagattgataagatggttgttgacgtttcgaaacagtttttccctcgtgtggctattggatatgaggatcccagggtgacactcaatgttggtgatggagtcgcatttttaagggctgttcctgcaggaacttatgatgcaataattgtggactcttcggatcccataggtcctgcacaagagctttttgagaagcccttctttcagttggtagcaaacgctctccgaccaggaggagttgtgtgcacccaggcagagagtatatggcttcacatgcacatcattgaggatattgtgtcaaactgccaccagatattcaaaggctctgtcaactacgcatggacaacagtccctacatatccaagtggagtgattggttttatgctttgttcgaccgagggtcctcctgttgattttaagcaccctgtgaatccaatcgctgaaaatgacggttccaaagaccccttgaaattttacaactctgagattcacacagctgctttctgtctaccatcttttgcaaagaaggtgattgaatcaatggcaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004766 GO:0005575 GO:0005623 GO:0005886 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044464 GO:0071704 GO:0071944 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

371

Amino Acids

40.33

Weight (kDa)

4.75

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23820 AT1G23820 AT1G70310
fragaria_vesca	FvH4_4g34680
malus_domestica	MD13G1090400.v1.1 MD14G1183600.v1.1 MD16G1091000.v1.1
prunus_persica	Prupe.1G255300_v2.0.a1 Prupe.5G176100_v2.0.a1
pyrus_communis	pycom13g07870 pycom16g07770
rosa_chinensis	RchiOBHm_Chr4g0444031 RchiOBHm_Chr7g0193881
rosa_laevigata	RLG00000004238 RLG00000005863
rosa_multiflora	Rmu_sc0015522.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261760 Rroxscaffold_5G00384600
rosa_rugosa	Rorug04G0349100 Rorug07G0012500
rosa_samantha	Rh4AG409900 Rh4BG421000 Rh4CG435300 Rh4DG416200 Rh7AG139200 Rh7BG139600 Rh7CG143100 Rh7DG140700
rosa_wichuraiana	Rw4G035210 Rw7G011880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1072
AciI	CCGC	6 cut(s)	27, 46, 86, 89, 415, 520
AclWI	GGATC	4 cut(s)	626, 639, 719, 732
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	207, 1034
AdeI	CACNNNGTG	1 cut(s)	991
AfaI	GTAC	2 cut(s)	411, 516
AfiI	CCNNNNNNNGG	3 cut(s)	289, 376, 613
AgsI	TTSAA	5 cut(s)	196, 218, 883, 1033, 1100
AhdI	GACNNNNNGTC	1 cut(s)	963
AjnI	CCWGG	5 cut(s)	142, 282, 635, 793, 813
AluBI	AGCT	4 cut(s)	83, 301, 748, 1061
AluI	AGCT	4 cut(s)	83, 301, 748, 1061
Alw21I	GWGCWC	1 cut(s)	812
Alw26I	GTCTC	6 cut(s)	79, 92, 98, 133, 393, 498
Alw44I	GTGCAC	1 cut(s)	808
AlwI	GGATC	4 cut(s)	626, 639, 719, 732
AoxI	GGCC	3 cut(s)	3, 47, 173
ApaLI	GTGCAC	1 cut(s)	808
ApeKI	GCWGC	2 cut(s)	83, 1061
ApoI	RAATTY	2 cut(s)	207, 1034
ArsI	GACNNNNNNTTYG	2 cut(s)	876, 908
Asp700I	GAANNNNTTC	1 cut(s)	761
AspS9I	GGNCC	5 cut(s)	24, 48, 174, 734, 965
AsuC2I	CCSGG	2 cut(s)	119, 177
AsuHPI	GGTGA	4 cut(s)	304, 652, 668, 1105
AsuII	TTCGAA	1 cut(s)	593
AvaII	GGWCC	3 cut(s)	24, 734, 965
BaeGI	GKGCMC	1 cut(s)	812
BamHI	GGATCC	2 cut(s)	631, 724
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	2 cut(s)	15, 241
Bbv12I	GWGCWC	1 cut(s)	812
BbvI	GCAGC	2 cut(s)	70, 1048
BccI	CCATC	6 cut(s)	238, 281, 466, 571, 653, 1084
BciT130I	CCWGG	5 cut(s)	144, 284, 637, 795, 815
BcnI	CCSGG	2 cut(s)	119, 177
BcoDI	GTCTC	6 cut(s)	79, 92, 98, 133, 393, 498
BfmI	CTRYAG	1 cut(s)	687
BisI	GCNGC	5 cut(s)	47, 84, 87, 90, 1062
BlsI	GCNGC	5 cut(s)	48, 85, 88, 91, 1063
Bme1390I	CCNGG	7 cut(s)	119, 144, 177, 284, 637, 795, 815
Bme18I	GGWCC	3 cut(s)	24, 734, 965
BmeRI	GACNNNNNGTC	1 cut(s)	963
BmgT120I	GGNCC	5 cut(s)	24, 48, 174, 734, 965
BmiI	GGNNCC	5 cut(s)	25, 633, 726, 966, 1018
BmrFI	CCNGG	7 cut(s)	119, 144, 177, 284, 637, 795, 815
BmsI	GCATC	1 cut(s)	691
BoxI	GACNNNNGTC	1 cut(s)	911
BpiI	GAAGAC	2 cut(s)	15, 241
Bpu14I	TTCGAA	1 cut(s)	593
BpuMI	CCSGG	2 cut(s)	119, 177
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	4 cut(s)	635, 636, 813, 960
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	3 cut(s)	289, 376, 613
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	5 cut(s)	144, 284, 637, 795, 815
BseDI	CCNNGG	4 cut(s)	635, 636, 813, 960
BseGI	GGATG	2 cut(s)	292, 319
BseLI	CCNNNNNNNGG	3 cut(s)	289, 376, 613
BseMII	CTCAG	2 cut(s)	147, 1038
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	4 cut(s)	71, 411, 516, 813
BseSI	GKGCMC	1 cut(s)	812
BseXI	GCAGC	2 cut(s)	70, 1048
BsgI	GTGCAG	1 cut(s)	723
Bsh1285I	CGRYCG	1 cut(s)	960
BshFI	GGCC	3 cut(s)	5, 49, 175
BsiEI	CGRYCG	1 cut(s)	960
BsiHKAI	GWGCWC	1 cut(s)	812
BsiSI	CCGG	3 cut(s)	38, 119, 177
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	3 cut(s)	289, 376, 613
BsmAI	GTCTC	6 cut(s)	79, 92, 98, 133, 393, 498
BsmBI	CGTCTC	3 cut(s)	133, 393, 498
BsmFI	GGGAC	1 cut(s)	899
BsnI	GGCC	3 cut(s)	5, 49, 175
Bso31I	GGTCTC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	593
Bsp1286I	GDGCHC	1 cut(s)	812
Bsp143I	GATC	2 cut(s)	631, 724
BspACI	CCGC	6 cut(s)	27, 46, 86, 89, 415, 520
BspANI	GGCC	3 cut(s)	5, 49, 175
BspCNI	CTCAG	2 cut(s)	148, 1039
BspLI	GGNNCC	5 cut(s)	25, 633, 726, 966, 1018
BspMAI	CTGCAG	1 cut(s)	691
BspPI	GGATC	4 cut(s)	626, 639, 719, 732
BspT104I	TTCGAA	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	4 cut(s)	635, 636, 813, 960
BssMI	GATC	2 cut(s)	631, 724
BssSI	CACGAG	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	5 cut(s)	144, 284, 637, 795, 815
Bst4CI	ACNGT	7 cut(s)	14, 71, 404, 509, 600, 913, 1016
Bst6I	CTCTTC	2 cut(s)	57, 724
BstBI	TTCGAA	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	427, 532
BstDEI	CTNAG	2 cut(s)	156, 1047
BstF5I	GGATG	2 cut(s)	292, 319
BstKTI	GATC	2 cut(s)	634, 727
BstMAI	GTCTC	6 cut(s)	79, 92, 98, 133, 393, 498
BstMBI	GATC	2 cut(s)	631, 724
BstMCI	CGRYCG	1 cut(s)	960
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 686, 838
BstNI	CCWGG	5 cut(s)	144, 284, 637, 795, 815
BstNSI	RCATGY	1 cut(s)	841
BstPAI	GACNNNNGTC	1 cut(s)	911
BstSCI	CCNGG	7 cut(s)	117, 142, 175, 282, 635, 793, 813
BstSFI	CTRYAG	1 cut(s)	687
BstSLI	GKGCMC	1 cut(s)	812
BstV1I	GCAGC	2 cut(s)	70, 1048
BstV2I	GAAGAC	2 cut(s)	15, 241
BstX2I	RGATCY	2 cut(s)	631, 724
BstYI	RGATCY	2 cut(s)	631, 724
BsuRI	GGCC	3 cut(s)	5, 49, 175
BtsCI	GGATG	2 cut(s)	292, 319
Cac8I	GCNNGC	2 cut(s)	427, 532
Cfr13I	GGNCC	5 cut(s)	24, 48, 174, 734, 965
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	410, 515
CspCI	CAANNNNNGTGG	2 cut(s)	693, 728
CviAII	CATG	2 cut(s)	838, 903
CviQI	GTAC	2 cut(s)	410, 515
DdeI	CTNAG	2 cut(s)	156, 1047
DpnI	GATC	2 cut(s)	633, 726
DpnII	GATC	2 cut(s)	631, 724
DraIII	CACNNNGTG	1 cut(s)	991
DriI	GACNNNNNGTC	1 cut(s)	963
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	57, 724
Eam1105I	GACNNNNNGTC	1 cut(s)	963
EarI	CTCTTC	2 cut(s)	57, 724
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	3 cut(s)	24, 734, 965
EcoO109I	RGGNCCY	2 cut(s)	734, 965
EcoRII	CCWGG	5 cut(s)	142, 282, 635, 793, 813
Esp3I	CGTCTC	3 cut(s)	133, 393, 498
FaeI	CATG	2 cut(s)	841, 906
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FaqI	GGGAC	1 cut(s)	899
FatI	CATG	2 cut(s)	837, 902
FauI	CCCGC	2 cut(s)	408, 513
FblI	GTMKAC	1 cut(s)	1072
Fnu4HI	GCNGC	5 cut(s)	47, 84, 87, 90, 1062
FokI	GGATG	2 cut(s)	299, 326
Fsp4HI	GCNGC	5 cut(s)	47, 84, 87, 90, 1062
GluI	GCNGC	5 cut(s)	47, 84, 87, 90, 1062
HaeIII	GGCC	3 cut(s)	5, 49, 175
HapII	CCGG	3 cut(s)	38, 119, 177
HgaI	GACGC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	841, 906
HincII	GTYRAC	3 cut(s)	481, 586, 895
HindII	GTYRAC	3 cut(s)	481, 586, 895
HinfI	GANTC	6 cut(s)	295, 663, 716, 994, 1051, 1100
HpaII	CCGG	3 cut(s)	38, 119, 177
HphI	GGTGA	4 cut(s)	304, 652, 668, 1105
Hpy166II	GTNNAC	8 cut(s)	410, 481, 515, 586, 715, 810, 895, 1073
Hpy188I	TCNGA	6 cut(s)	157, 229, 237, 724, 791, 1048
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	8 cut(s)	410, 481, 515, 586, 715, 810, 895, 1073
HpyAV	CCTTC	3 cut(s)	370, 772, 1084
HpyCH4III	ACNGT	7 cut(s)	14, 71, 404, 509, 600, 913, 1016
HpyCH4IV	ACGT	2 cut(s)	483, 588
HpyCH4V	TGCA	6 cut(s)	689, 704, 740, 810, 841, 1085
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 686, 838
HpyF3I	CTNAG	2 cut(s)	156, 1047
HpySE526I	ACGT	2 cut(s)	483, 588
Hsp92II	CATG	2 cut(s)	841, 906
Kzo9I	GATC	2 cut(s)	631, 724
Lsp1109I	GCAGC	2 cut(s)	70, 1048
LweI	GCATC	1 cut(s)	691
MaeII	ACGT	2 cut(s)	483, 588
MaeIII	GTNAC	1 cut(s)	640
MalI	GATC	2 cut(s)	633, 726
MboI	GATC	2 cut(s)	631, 724
MboII	GAAGA	8 cut(s)	20, 74, 208, 241, 338, 426, 531, 711
MflI	RGATCY	2 cut(s)	631, 724
MhlI	GDGCHC	1 cut(s)	812
MluCI	AATT	4 cut(s)	207, 360, 708, 1034
MlyI	GAGTC	2 cut(s)	672, 710
MmeI	TCCRAC	1 cut(s)	814
MroXI	GAANNNNTTC	1 cut(s)	761
MseI	TTAA	2 cut(s)	674, 981
MspA1I	CMGCKG	4 cut(s)	29, 83, 301, 1061
MspI	CCGG	3 cut(s)	38, 119, 177
MspR9I	CCNGG	7 cut(s)	119, 144, 177, 284, 637, 795, 815
MvaI	CCWGG	5 cut(s)	144, 284, 637, 795, 815
MwoI	GCNNNNNNNGC	3 cut(s)	89, 686, 838
NciI	CCSGG	2 cut(s)	119, 177
NdeII	GATC	2 cut(s)	631, 724
NlaIII	CATG	2 cut(s)	841, 906
NlaIV	GGNNCC	5 cut(s)	25, 633, 726, 966, 1018
NmuCI	GTSAC	1 cut(s)	640
NspI	RCATGY	1 cut(s)	841
NspV	TTCGAA	1 cut(s)	593
PasI	CCCWGGG	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	4 cut(s)	295, 994, 1051, 1100
PfoI	TCCNGGA	1 cut(s)	282
PkrI	GCNGC	5 cut(s)	48, 85, 88, 91, 1063
PleI	GAGTC	2 cut(s)	671, 710
PpsI	GAGTC	2 cut(s)	671, 710
PpuMI	RGGWCCY	2 cut(s)	734, 965
PshAI	GACNNNNGTC	1 cut(s)	911
Psp5II	RGGWCCY	2 cut(s)	734, 965
Psp6I	CCWGG	5 cut(s)	142, 282, 635, 793, 813
PspGI	CCWGG	5 cut(s)	142, 282, 635, 793, 813
PspN4I	GGNNCC	5 cut(s)	25, 633, 726, 966, 1018
PspPI	GGNCC	5 cut(s)	24, 48, 174, 734, 965
PspPPI	RGGWCCY	2 cut(s)	734, 965
PstI	CTGCAG	1 cut(s)	691
PsuI	RGATCY	2 cut(s)	631, 724
PvuII	CAGCTG	3 cut(s)	83, 301, 1061
RsaI	GTAC	2 cut(s)	411, 516
RsaNI	GTAC	2 cut(s)	410, 515
SaqAI	TTAA	2 cut(s)	674, 981
SatI	GCNGC	5 cut(s)	47, 84, 87, 90, 1062
Sau3AI	GATC	2 cut(s)	631, 724
Sau96I	GGNCC	5 cut(s)	24, 48, 174, 734, 965
SbfI	CCTGCAGG	1 cut(s)	691
SchI	GAGTC	2 cut(s)	672, 710
ScrFI	CCNGG	7 cut(s)	119, 144, 177, 284, 637, 795, 815
SdaI	CCTGCAGG	1 cut(s)	691
SduI	GDGCHC	1 cut(s)	812
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	687
SfuI	TTCGAA	1 cut(s)	593
SinI	GGWCC	3 cut(s)	24, 734, 965
Sse8387I	CCTGCAGG	1 cut(s)	691
Sse9I	AATT	4 cut(s)	207, 360, 708, 1034
SsiI	CCGC	6 cut(s)	27, 46, 86, 89, 415, 520
StyD4I	CCNGG	7 cut(s)	117, 142, 175, 282, 635, 793, 813
TaaI	ACNGT	7 cut(s)	14, 71, 404, 509, 600, 913, 1016
TaiI	ACGT	2 cut(s)	486, 591
TaqI	TCGA	2 cut(s)	593, 956
TaqII	GACCGA	3 cut(s)	116, 320, 974
TasI	AATT	4 cut(s)	207, 360, 708, 1034
TatI	WGTACW	2 cut(s)	409, 514
TauI	GCSGC	3 cut(s)	49, 89, 92
TfiI	GAWTC	4 cut(s)	295, 994, 1051, 1100
Tru1I	TTAA	2 cut(s)	674, 981
Tru9I	TTAA	2 cut(s)	674, 981
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	2 cut(s)	83, 1061
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	1 cut(s)	330
VneI	GTGCAC	1 cut(s)	808
VpaK11BI	GGWCC	3 cut(s)	24, 734, 965
XapI	RAATTY	2 cut(s)	207, 1034
XceI	RCATGY	1 cut(s)	841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	1072
XmnI	GAANNNNTTC	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.