AT1G70310

Belongs to the spermidine spermine synthase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
26485238 .. 26487595
2358 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70310.1

Sequence Viewer

Length: 1023 bp
ATGTCTTCAACACAAGAAGCGTCTGTTACTGATTTGCCCGTGAAGAGACCTAGAGAAGCAGAGGAGGACAATAACGGCGGCGCCATGGAAACAGAGAACGGTGGAGGAGAGATAAAGGAGCCTTCTTGTATGTCCTCTATTATTCCTGGATGGTTCTCTGAGATTAGTCCTATGTGGCCAGGAGAAGCACATTCTCTCAAGGTAGAGAAGATTCTATTCCAAGGGAAATCAGATTACCAGGATGTTATTGTTTTCCAGTCTGCAACATATGGAAAGGTTTTGGTTTTGGATGGAGTGATTCAACTCACTGAGAGAGATGAATGTGCGTATCAAGAAATGATCACTCATCTTCCTTTGTGCTCTATCTCCAACCCCAAAAAGGTACTGGTGATTGGAGGAGGAGATGGAGGAGTCCTGAGGGAAGTGGCACGTCATAGTTCTGTTGAGCAGATTGACATTTGTGAAATAGATAAAATGGTGGTTGATGTGGCTAAGCAGTATTTCCCTAATGTAGCAGTTGGATACGAGGATCCTCGTGTCAACCTCATCATTGGCGATGGTGTTGCTTTCTTGAAGAACGCTGCTGAAGGAACCTATGATGCAGTTATTGTTGATTCATCTGATCCAATCGGTCCAGCAAAAGAGCTATTTGAGAAACCTTTCTTTGAGTCAGTGAATAGAGCTCTTCGTCCTGGTGGAGTTGTGTGCACACAAGCTGAAAGCTTGTGGCTTCACATGGATATCATTGAAGACATTGTTTCTAATTGCCGTGACATCTTTAAAGGATCTGTTAACTACGCTTGGACCAGTGTTCCAACTTACCCGAGTGGAGTCATTGGATTCATGCTTTGTTCATCTGAAGGACCACAAGTCGATTTCAAGAAGCCAGTGAGTCTAATCGATACTGATGAAAGCTCTATCAAATCACACTGTCCCTTGAAGTATTACAACGCTGAGATTCACTCAGCTGCTTTCTGCTTGCCCTCTTTTGCTAAGAAGGTGATTGATTCGAAAGCCAACTAG

Protein Analysis

340

Amino Acids

37.14

Weight (kDa)

4.72

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Spermine_synt_N PF17284 50 - 104 1.7e-24 Spermidine synthase tetramerisation domain
Spermine_synth PF01564 107 - 295 4.8e-78 Spermine/spermidine synthase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AciI CCGC 1 cut(s) 78
AclWI GGATC 4 cut(s) 524, 537, 617, 793
AcoI YGGCCR 1 cut(s) 176
AcuI CTGAAG 2 cut(s) 606, 879
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 1 cut(s) 384
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 6 cut(s) 9, 302, 574, 749, 880, 940
AhdI GACNNNNNGTC 1 cut(s) 869
AjiI CACGTC 1 cut(s) 431
AjnI CCWGG 4 cut(s) 145, 178, 237, 691
AluBI AGCT 6 cut(s) 646, 683, 716, 723, 915, 968
AluI AGCT 6 cut(s) 646, 683, 716, 723, 915, 968
Alw21I GWGCWC 3 cut(s) 362, 685, 710
Alw26I GTCTC 1 cut(s) 40
Alw44I GTGCAC 1 cut(s) 706
AlwI GGATC 4 cut(s) 524, 537, 617, 793
Ama87I CYCGRG 1 cut(s) 823
AoxI GGCC 1 cut(s) 176
ApaLI GTGCAC 1 cut(s) 706
ApeKI GCWGC 2 cut(s) 581, 968
Asp700I GAANNNNTTC 1 cut(s) 659
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 3 cut(s) 632, 804, 863
AsuHPI GGTGA 2 cut(s) 400, 1012
AsuII TTCGAA 1 cut(s) 1010
AvaI CYCGRG 1 cut(s) 823
AvaII GGWCC 3 cut(s) 632, 804, 863
AxyI CCTNAGG 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 710
BalI TGGCCA 1 cut(s) 178
BamHI GGATCC 1 cut(s) 529
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 685
BauI CACGAG 1 cut(s) 534
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 3 cut(s) 362, 685, 710
BbvI GCAGC 2 cut(s) 568, 955
BccI CCATC 4 cut(s) 144, 284, 398, 551
BceAI ACGGC 2 cut(s) 91, 753
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 4 cut(s) 147, 180, 239, 693
BciVI GTATCC 1 cut(s) 515
BclI TGATCA 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 2 cut(s) 51, 1021
BfoI RGCGCY 1 cut(s) 84
BfuI GTATCC 1 cut(s) 515
BisI GCNGC 3 cut(s) 79, 582, 969
BlpI GCTNAGC 1 cut(s) 492
BlsI GCNGC 3 cut(s) 80, 583, 970
Bme1390I CCNGG 4 cut(s) 147, 180, 239, 693
Bme18I GGWCC 3 cut(s) 632, 804, 863
BmeRI GACNNNNNGTC 1 cut(s) 869
BmeT110I CYCGRG 1 cut(s) 823
BmgBI CACGTC 1 cut(s) 431
BmgT120I GGNCC 3 cut(s) 632, 804, 863
BmiI GGNNCC 4 cut(s) 82, 120, 531, 592
BmrFI CCNGG 4 cut(s) 147, 180, 239, 693
BmsI GCATC 1 cut(s) 589
BpiI GAAGAC 1 cut(s) 756
BplI GAGNNNNNCTC 2 cut(s) 947, 979
Bpu1102I GCTNAGC 1 cut(s) 492
Bpu14I TTCGAA 1 cut(s) 1010
BpuEI CTTGAG 1 cut(s) 182
Bsa29I ATCGAT 1 cut(s) 900
BsaHI GRCGYC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 84, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 4 cut(s) 256, 390, 807, 887
Bse21I CCTNAGG 1 cut(s) 416
BseBI CCWGG 4 cut(s) 147, 180, 239, 693
BseCI ATCGAT 1 cut(s) 900
BseDI CCNNGG 2 cut(s) 84, 220
BseGI GGATG 3 cut(s) 155, 247, 295
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 5 cut(s) 150, 300, 407, 945, 978
BseNI ACTGG 4 cut(s) 256, 390, 807, 887
BseRI GAGGAG 5 cut(s) 77, 120, 411, 414, 423
BseSI GKGCMC 1 cut(s) 710
BseXI GCAGC 2 cut(s) 568, 955
BshFI GGCC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 80
BshVI ATCGAT 1 cut(s) 900
BsiHKAI GWGCWC 3 cut(s) 362, 685, 710
BsiHKCI CYCGRG 1 cut(s) 823
BslFI GGGAC 1 cut(s) 918
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 918
BsnI GGCC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 823
Bsp119I TTCGAA 1 cut(s) 1010
Bsp1286I GDGCHC 3 cut(s) 362, 685, 710
Bsp143I GATC 4 cut(s) 339, 529, 622, 785
Bsp1720I GCTNAGC 1 cut(s) 492
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 5 cut(s) 151, 301, 408, 946, 977
BspDI ATCGAT 1 cut(s) 900
BspLI GGNNCC 4 cut(s) 82, 120, 531, 592
BspPI GGATC 4 cut(s) 524, 537, 617, 793
BspQI GCTCTTC 1 cut(s) 690
BspT104I TTCGAA 1 cut(s) 1010
BspT107I GGYRCC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 40
BsrI ACTGG 4 cut(s) 256, 390, 807, 887
BssECI CCNNGG 2 cut(s) 84, 220
BssMI GATC 4 cut(s) 339, 529, 622, 785
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 534
BssT1I CCWWGG 2 cut(s) 84, 220
Bst2BI CACGAG 1 cut(s) 534
Bst2UI CCWGG 4 cut(s) 147, 180, 239, 693
Bst4CI ACNGT 2 cut(s) 101, 932
Bst6I CTCTTC 2 cut(s) 38, 690
BstACI GRCGYC 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 1010
BstC8I GCNNGC 1 cut(s) 980
BstDEI CTNAG 7 cut(s) 159, 309, 416, 492, 954, 964, 993
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 3 cut(s) 155, 247, 295
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 4 cut(s) 342, 532, 625, 788
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 4 cut(s) 339, 529, 622, 785
BstNI CCWGG 4 cut(s) 147, 180, 239, 693
BstSCI CCNGG 4 cut(s) 145, 178, 237, 691
BstSLI GKGCMC 1 cut(s) 710
BstV1I GCAGC 2 cut(s) 568, 955
BstV2I GAAGAC 1 cut(s) 756
BstX2I RGATCY 2 cut(s) 529, 785
BstYI RGATCY 2 cut(s) 529, 785
Bsu15I ATCGAT 1 cut(s) 900
Bsu36I CCTNAGG 1 cut(s) 416
BsuI GTATCC 1 cut(s) 515
BsuRI GGCC 1 cut(s) 178
BsuTUI ATCGAT 1 cut(s) 900
BtgI CCRYGG 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 570
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 3 cut(s) 155, 247, 295
BtsIMutI CAGTG 5 cut(s) 306, 678, 814, 894, 928
Cac8I GCNNGC 1 cut(s) 980
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 632, 804, 863
ClaI ATCGAT 1 cut(s) 900
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 383
CviAII CATG 3 cut(s) 85, 736, 844
CviQI GTAC 1 cut(s) 383
DdeI CTNAG 7 cut(s) 159, 309, 416, 492, 954, 964, 993
DinI GGCGCC 1 cut(s) 82
DpnI GATC 4 cut(s) 341, 531, 624, 787
DpnII GATC 4 cut(s) 339, 529, 622, 785
DraI TTTAAA 1 cut(s) 781
DriI GACNNNNNGTC 1 cut(s) 869
EaeI YGGCCR 1 cut(s) 176
Eam1104I CTCTTC 2 cut(s) 38, 690
Eam1105I GACNNNNNGTC 1 cut(s) 869
EarI CTCTTC 2 cut(s) 38, 690
Ecl136II GAGCTC 1 cut(s) 683
Eco130I CCWWGG 2 cut(s) 84, 220
Eco24I GRGCYC 1 cut(s) 685
Eco31I GGTCTC 1 cut(s) 40
Eco32I GATATC 1 cut(s) 742
Eco47I GGWCC 3 cut(s) 632, 804, 863
Eco53kI GAGCTC 1 cut(s) 683
Eco57I CTGAAG 2 cut(s) 606, 879
Eco81I CCTNAGG 1 cut(s) 416
Eco88I CYCGRG 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 683
EcoRII CCWGG 4 cut(s) 145, 178, 237, 691
EcoRV GATATC 1 cut(s) 742
EcoT14I CCWWGG 2 cut(s) 84, 220
EcoT38I GRGCYC 1 cut(s) 685
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
ErhI CCWWGG 2 cut(s) 84, 220
FaeI CATG 3 cut(s) 88, 739, 847
FaiI YATR 9 cut(s) 86, 131, 173, 268, 270, 435, 597, 737, 845
FaqI GGGAC 1 cut(s) 918
FatI CATG 3 cut(s) 84, 735, 843
FauNDI CATATG 1 cut(s) 268
FbaI TGATCA 1 cut(s) 339
Fnu4HI GCNGC 3 cut(s) 79, 582, 969
FokI GGATG 3 cut(s) 162, 254, 302
FriOI GRGCYC 1 cut(s) 685
Fsp4HI GCNGC 3 cut(s) 79, 582, 969
FspBI CTAG 2 cut(s) 51, 1021
GlaI GCGC 1 cut(s) 82
GluI GCNGC 3 cut(s) 79, 582, 969
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 1 cut(s) 178
HgaI GACGC 1 cut(s) 9
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 3 cut(s) 88, 739, 847
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 2 cut(s) 541, 793
HindII GTYRAC 2 cut(s) 541, 793
HindIII AAGCTT 1 cut(s) 721
HpaI GTTAAC 1 cut(s) 793
HphI GGTGA 2 cut(s) 400, 1012
Hpy166II GTNNAC 3 cut(s) 541, 708, 793
Hpy188I TCNGA 4 cut(s) 160, 232, 622, 859
Hpy188III TCNNGA 4 cut(s) 332, 415, 571, 880
Hpy8I GTNNAC 3 cut(s) 541, 708, 793
HpyAV CCTTC 4 cut(s) 132, 581, 854, 991
HpyCH4III ACNGT 2 cut(s) 101, 932
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 3 cut(s) 263, 602, 708
HpyF3I CTNAG 7 cut(s) 159, 309, 416, 492, 954, 964, 993
HpySE526I ACGT 1 cut(s) 430
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 3 cut(s) 88, 739, 847
HspAI GCGC 1 cut(s) 81
KasI GGCGCC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 339
KspAI GTTAAC 1 cut(s) 793
Kzo9I GATC 4 cut(s) 339, 529, 622, 785
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 2 cut(s) 568, 955
LweI GCATC 1 cut(s) 589
MaeI CTAG 2 cut(s) 51, 1021
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 2 cut(s) 25, 770
MalI GATC 4 cut(s) 341, 531, 624, 787
MboI GATC 4 cut(s) 339, 529, 622, 785
MboII GAAGA 6 cut(s) 55, 220, 341, 586, 677, 761
MflI RGATCY 2 cut(s) 529, 785
MhlI GDGCHC 3 cut(s) 362, 685, 710
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 1 cut(s) 763
MluNI TGGCCA 1 cut(s) 178
Mly113I GGCGCC 1 cut(s) 81
MlyI GAGTC 4 cut(s) 420, 677, 840, 901
MmeI TCCRAC 3 cut(s) 393, 499, 839
Mox20I TGGCCA 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 659
MscI TGGCCA 1 cut(s) 178
MseI TTAA 2 cut(s) 780, 792
Msp20I TGGCCA 1 cut(s) 178
MspA1I CMGCKG 1 cut(s) 968
MspR9I CCNGG 4 cut(s) 147, 180, 239, 693
MvaI CCWGG 4 cut(s) 147, 180, 239, 693
NarI GGCGCC 1 cut(s) 81
NcoI CCATGG 1 cut(s) 84
NdeI CATATG 1 cut(s) 268
NdeII GATC 4 cut(s) 339, 529, 622, 785
NlaIII CATG 3 cut(s) 88, 739, 847
NlaIV GGNNCC 4 cut(s) 82, 120, 531, 592
NmuCI GTSAC 1 cut(s) 770
NspV TTCGAA 1 cut(s) 1010
PciSI GCTCTTC 1 cut(s) 690
PdmI GAANNNNTTC 1 cut(s) 659
PfeI GAWTC 6 cut(s) 211, 298, 614, 840, 958, 1007
PfoI TCCNGGA 1 cut(s) 145
PkrI GCNGC 3 cut(s) 80, 583, 970
PleI GAGTC 4 cut(s) 419, 676, 839, 900
PluTI GGCGCC 1 cut(s) 84
PpsI GAGTC 4 cut(s) 419, 676, 839, 900
Psp124BI GAGCTC 1 cut(s) 685
Psp6I CCWGG 4 cut(s) 145, 178, 237, 691
PspGI CCWGG 4 cut(s) 145, 178, 237, 691
PspN4I GGNNCC 4 cut(s) 82, 120, 531, 592
PspPI GGNCC 3 cut(s) 632, 804, 863
PsuI RGATCY 2 cut(s) 529, 785
PvuII CAGCTG 1 cut(s) 968
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
SacI GAGCTC 1 cut(s) 685
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 2 cut(s) 780, 792
SatI GCNGC 3 cut(s) 79, 582, 969
Sau3AI GATC 4 cut(s) 339, 529, 622, 785
Sau96I GGNCC 3 cut(s) 632, 804, 863
SchI GAGTC 4 cut(s) 420, 677, 840, 901
ScrFI CCNGG 4 cut(s) 147, 180, 239, 693
SduI GDGCHC 3 cut(s) 362, 685, 710
SfaNI GCATC 1 cut(s) 589
SfoI GGCGCC 1 cut(s) 82
SfuI TTCGAA 1 cut(s) 1010
SinI GGWCC 3 cut(s) 632, 804, 863
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 763
SsiI CCGC 1 cut(s) 78
SspDI GGCGCC 1 cut(s) 80
SspMI CTAG 2 cut(s) 51, 1021
SstI GAGCTC 1 cut(s) 685
StyD4I CCNGG 4 cut(s) 145, 178, 237, 691
StyI CCWWGG 2 cut(s) 84, 220
TaaI ACNGT 2 cut(s) 101, 932
TaiI ACGT 1 cut(s) 433
TaqI TCGA 3 cut(s) 873, 900, 1010
TaqII GACCGA 1 cut(s) 620
TasI AATT 1 cut(s) 763
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 6 cut(s) 211, 298, 614, 840, 958, 1007
Tru1I TTAA 2 cut(s) 780, 792
Tru9I TTAA 2 cut(s) 780, 792
TscAI CASTG 5 cut(s) 313, 678, 814, 894, 935
TseFI GTSAC 1 cut(s) 770
TseI GCWGC 2 cut(s) 581, 968
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 5 cut(s) 333, 606, 832, 843, 924
TspRI CASTG 5 cut(s) 313, 678, 814, 894, 935
VneI GTGCAC 1 cut(s) 706
VpaK11BI GGWCC 3 cut(s) 632, 804, 863
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 2 cut(s) 51, 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.