Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005047

Physical Location & Seq

Genomic Coordinates Forward (+)

26605675 .. 26609290

Gene Structure 3616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G255300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCGGAAGAGATTGTGGCGGGGTCTGCTGATTTTCCATTGAAGAGGTCCAGAGAAGAAGAAGAGAACGGAGTTTATGCGGCCTCAACCGTGTCCGTGGAGACTGATACTGGCAAAGAGGCTGATGGTGTTTCTGCTGTTATTCCTGGGTGGTTTTCAGAGATTAGCCCAATGTGGCCAGGAGAGGCACATTCCTTGAAGATAGAGAAGATTCTATTTCAAGGGAAGTCTGACTATCAGGATGTGATGGTCTTCCAGTCATCAACATATGGAAAGGTTCTTGTATTGGATGGGGTGATTCAGCTAACCGAAAGGGATGAATGTGCCTATCAAGAAATGATTACTCATCTTCCCCTCTGCTCAATTCCAAACCCAGTGAAGGTTTTGGTTATCGGTGGAGGAGATGGTGGAGTTCTGCGGGAAGTGGCTCGCTATTCTTCTATTGAGCAGATAGATATATGTGAGATTGACAAGATGGTGGTTGATGTGTCTAAGCAGTTTTTCCCTGCCGTAGCTGTTGGATATGAGGACCCACGAGTCAAGCTTCATGTTGGTGATGGAGTTGCATTTTTGAAGGCTGTTCCTGCAGGAACTTATGATGCAGTAATAGTGGACTCTTCTGACCCAATAGGTCCTGCACAAGAGCTTTTTGAGAAGCCCTTTTTTCAGACAGTAGCAAATGCTCTTCGTCCAGGAGGAGTCGTGTGTACACAGGCAGAGAGTATATGGCTTCACATGCACATCATTGAGGATATTGTGGCCAACTGTCGCCAGATATTTAAAGGCTCCGTCAACTACGCATGGACTACAGTCCCTACATATCCAAGTGGGGTGATTGGTTTTATGCTTTGTTCTACCGAGGGACCTGCTGTGGATTTTAAGCACCCTGTGAATCCAATTGATGCAAATGACAGTCAAAAATCAAGACCATTGAAATTTTACAACTCTGAGATTCACACAGCTGCTTTCTGTCTACCATCTTTTGCAAAGAAGGTGATTGATGCAAAAGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004766 GO:0005575 GO:0005623 GO:0005886 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044464 GO:0071704 GO:0071944 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

339

Amino Acids

36.81

Weight (kDa)

4.81

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23820 AT1G23820 AT1G70310
fragaria_vesca	FvH4_4g34680
malus_domestica	MD13G1090400.v1.1 MD14G1183600.v1.1 MD16G1091000.v1.1
prunus_persica	Prupe.1G255300_v2.0.a1 Prupe.5G176100_v2.0.a1
pyrus_communis	pycom13g07870 pycom16g07770
rosa_chinensis	RchiOBHm_Chr4g0444031 RchiOBHm_Chr7g0193881
rosa_laevigata	RLG00000004238 RLG00000005863
rosa_multiflora	Rmu_sc0015522.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261760 Rroxscaffold_5G00384600
rosa_rugosa	Rorug04G0349100 Rorug07G0012500
rosa_samantha	Rh4AG409900 Rh4BG421000 Rh4CG435300 Rh4DG416200 Rh7AG139200 Rh7BG139600 Rh7CG143100 Rh7DG140700
rosa_wichuraiana	Rw4G035210 Rw7G011880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	874
AccI	GTMKAC	1 cut(s)	973
AciI	CCGC	4 cut(s)	5, 20, 80, 418
AcoI	YGGCCR	2 cut(s)	176, 759
AcsI	RAATTY	1 cut(s)	935
AdeI	CACNNNGTG	1 cut(s)	889
AfaI	GTAC	1 cut(s)	709
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	5 cut(s)	43, 199, 221, 574, 934
AjnI	CCWGG	3 cut(s)	145, 178, 691
AluBI	AGCT	5 cut(s)	304, 515, 544, 646, 962
AluI	AGCT	5 cut(s)	304, 515, 544, 646, 962
Alw26I	GTCTC	1 cut(s)	95
AoxI	GGCC	3 cut(s)	81, 176, 759
ApeKI	GCWGC	1 cut(s)	962
ApoI	RAATTY	1 cut(s)	935
AspS9I	GGNCC	4 cut(s)	48, 529, 632, 863
AsuHPI	GGTGA	4 cut(s)	307, 566, 844, 1006
AvaII	GGWCC	4 cut(s)	48, 529, 632, 863
BalI	TGGCCA	2 cut(s)	178, 761
BauI	CACGAG	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	949
BccI	CCATC	7 cut(s)	119, 241, 284, 398, 469, 551, 985
BceAI	ACGGC	1 cut(s)	494
BcgI	CGANNNNNNTGC	2 cut(s)	848, 882
BciT130I	CCWGG	3 cut(s)	147, 180, 693
BcoDI	GTCTC	1 cut(s)	95
BfmI	CTRYAG	2 cut(s)	585, 807
BfuAI	ACCTGC	1 cut(s)	874
BisI	GCNGC	2 cut(s)	81, 963
BlsI	GCNGC	2 cut(s)	82, 964
Bme1390I	CCNGG	3 cut(s)	147, 180, 693
Bme18I	GGWCC	4 cut(s)	48, 529, 632, 863
BmgT120I	GGNCC	4 cut(s)	48, 529, 632, 863
BmiI	GGNNCC	3 cut(s)	531, 787, 864
BmrFI	CCNGG	3 cut(s)	147, 180, 693
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	3 cut(s)	589, 892, 991
BmuI	ACTGGG	1 cut(s)	368
BoxI	GACNNNNGTC	1 cut(s)	809
BpiI	GAAGAC	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	96, 146, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	3 cut(s)	115, 256, 374
BseBI	CCWGG	3 cut(s)	147, 180, 693
BseDI	CCNNGG	3 cut(s)	96, 146, 858
BseGI	GGATG	3 cut(s)	247, 295, 322
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	939
BseNI	ACTGG	3 cut(s)	115, 256, 374
BseRI	GAGGAG	2 cut(s)	414, 711
BseXI	GCAGC	1 cut(s)	949
BsgI	GTGCAG	1 cut(s)	621
BshFI	GGCC	3 cut(s)	83, 178, 761
BslFI	GGGAC	2 cut(s)	797, 876
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	797, 876
BsnI	GGCC	3 cut(s)	83, 178, 761
Bsp1407I	TGTACA	1 cut(s)	707
BspACI	CCGC	4 cut(s)	5, 20, 80, 418
BspANI	GGCC	3 cut(s)	83, 178, 761
BspCNI	CTCAG	1 cut(s)	940
BspLI	GGNNCC	3 cut(s)	531, 787, 864
BspMAI	CTGCAG	1 cut(s)	589
BspMI	ACCTGC	1 cut(s)	874
BspQI	GCTCTTC	1 cut(s)	690
BsrGI	TGTACA	1 cut(s)	707
BsrI	ACTGG	3 cut(s)	115, 256, 374
BssECI	CCNNGG	3 cut(s)	96, 146, 858
BssSI	CACGAG	1 cut(s)	534
Bst2BI	CACGAG	1 cut(s)	534
Bst2UI	CCWGG	3 cut(s)	147, 180, 693
Bst4CI	ACNGT	5 cut(s)	91, 673, 767, 811, 914
Bst6I	CTCTTC	5 cut(s)	3, 38, 57, 622, 690
BstAUI	TGTACA	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	492, 948
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	3 cut(s)	247, 295, 322
BstMAI	GTCTC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 584, 736
BstNI	CCWGG	3 cut(s)	147, 180, 693
BstNSI	RCATGY	1 cut(s)	739
BstPAI	GACNNNNGTC	1 cut(s)	809
BstSCI	CCNGG	3 cut(s)	145, 178, 691
BstSFI	CTRYAG	2 cut(s)	585, 807
BstV1I	GCAGC	1 cut(s)	949
BstV2I	GAAGAC	1 cut(s)	244
BsuRI	GGCC	3 cut(s)	83, 178, 761
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	247, 295, 322
BtsIMutI	CAGTG	1 cut(s)	381
BveI	ACCTGC	1 cut(s)	874
Cac8I	GCNNGC	1 cut(s)	430
Cfr13I	GGNCC	4 cut(s)	48, 529, 632, 863
Csp6I	GTAC	1 cut(s)	708
CviAII	CATG	3 cut(s)	548, 736, 801
CviQI	GTAC	1 cut(s)	708
DdeI	CTNAG	2 cut(s)	492, 948
DraI	TTTAAA	1 cut(s)	781
DraIII	CACNNNGTG	1 cut(s)	889
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	2 cut(s)	176, 759
Eam1104I	CTCTTC	5 cut(s)	3, 38, 57, 622, 690
EarI	CTCTTC	5 cut(s)	3, 38, 57, 622, 690
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	4 cut(s)	48, 529, 632, 863
EcoO109I	RGGNCCY	3 cut(s)	529, 632, 863
EcoRII	CCWGG	3 cut(s)	145, 178, 691
FaeI	CATG	3 cut(s)	551, 739, 804
FaqI	GGGAC	2 cut(s)	797, 876
FatI	CATG	3 cut(s)	547, 735, 800
FauI	CCCGC	2 cut(s)	13, 411
FauNDI	CATATG	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	973
Fnu4HI	GCNGC	2 cut(s)	81, 963
FokI	GGATG	3 cut(s)	254, 302, 329
Fsp4HI	GCNGC	2 cut(s)	81, 963
GluI	GCNGC	2 cut(s)	81, 963
HaeIII	GGCC	3 cut(s)	83, 178, 761
Hin1II	CATG	3 cut(s)	551, 739, 804
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	7 cut(s)	211, 298, 537, 614, 699, 892, 952
HphI	GGTGA	4 cut(s)	307, 566, 844, 1006
Hpy166II	GTNNAC	5 cut(s)	613, 708, 710, 793, 974
Hpy188I	TCNGA	5 cut(s)	160, 232, 622, 669, 949
Hpy188III	TCNNGA	4 cut(s)	51, 239, 332, 924
Hpy8I	GTNNAC	5 cut(s)	613, 708, 710, 793, 974
HpyAV	CCTTC	3 cut(s)	373, 568, 985
HpyCH4III	ACNGT	5 cut(s)	91, 673, 767, 811, 914
HpyCH4V	TGCA	8 cut(s)	566, 587, 602, 638, 739, 905, 986, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 584, 736
HpyF3I	CTNAG	2 cut(s)	492, 948
Hsp92II	CATG	3 cut(s)	551, 739, 804
LguI	GCTCTTC	1 cut(s)	690
LmnI	GCTCC	1 cut(s)	791
Lsp1109I	GCAGC	1 cut(s)	949
LweI	GCATC	3 cut(s)	589, 892, 991
MfeI	CAATTG	1 cut(s)	897
MlsI	TGGCCA	2 cut(s)	178, 761
MluCI	AATT	4 cut(s)	363, 897, 935, 1012
MluNI	TGGCCA	2 cut(s)	178, 761
MlyI	GAGTC	3 cut(s)	546, 608, 708
MmeI	TCCRAC	1 cut(s)	499
Mox20I	TGGCCA	2 cut(s)	178, 761
MscI	TGGCCA	2 cut(s)	178, 761
MseI	TTAA	2 cut(s)	780, 879
MslI	CAYNNNNRTG	1 cut(s)	552
Msp20I	TGGCCA	2 cut(s)	178, 761
MspA1I	CMGCKG	1 cut(s)	962
MspR9I	CCNGG	3 cut(s)	147, 180, 693
MunI	CAATTG	1 cut(s)	897
MvaI	CCWGG	3 cut(s)	147, 180, 693
MwoI	GCNNNNNNNGC	3 cut(s)	26, 584, 736
NdeI	CATATG	1 cut(s)	268
NlaIII	CATG	3 cut(s)	551, 739, 804
NlaIV	GGNNCC	3 cut(s)	531, 787, 864
NspI	RCATGY	1 cut(s)	739
PciSI	GCTCTTC	1 cut(s)	690
PfeI	GAWTC	4 cut(s)	211, 298, 892, 952
PfoI	TCCNGGA	1 cut(s)	691
PkrI	GCNGC	2 cut(s)	82, 964
PleI	GAGTC	3 cut(s)	545, 608, 707
PpsI	GAGTC	3 cut(s)	545, 608, 707
PpuMI	RGGWCCY	3 cut(s)	529, 632, 863
PshAI	GACNNNNGTC	1 cut(s)	809
Psp5II	RGGWCCY	3 cut(s)	529, 632, 863
Psp6I	CCWGG	3 cut(s)	145, 178, 691
PspGI	CCWGG	3 cut(s)	145, 178, 691
PspN4I	GGNNCC	3 cut(s)	531, 787, 864
PspPI	GGNCC	4 cut(s)	48, 529, 632, 863
PspPPI	RGGWCCY	3 cut(s)	529, 632, 863
PstI	CTGCAG	1 cut(s)	589
PvuII	CAGCTG	1 cut(s)	962
RsaI	GTAC	1 cut(s)	709
RsaNI	GTAC	1 cut(s)	708
RseI	CAYNNNNRTG	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	2 cut(s)	780, 879
SatI	GCNGC	2 cut(s)	81, 963
Sau96I	GGNCC	4 cut(s)	48, 529, 632, 863
SbfI	CCTGCAGG	1 cut(s)	589
SchI	GAGTC	3 cut(s)	546, 608, 708
ScrFI	CCNGG	3 cut(s)	147, 180, 693
SdaI	CCTGCAGG	1 cut(s)	589
SfaNI	GCATC	3 cut(s)	589, 892, 991
SfcI	CTRYAG	2 cut(s)	585, 807
SinI	GGWCC	4 cut(s)	48, 529, 632, 863
SmiMI	CAYNNNNRTG	1 cut(s)	552
Sse8387I	CCTGCAGG	1 cut(s)	589
Sse9I	AATT	4 cut(s)	363, 897, 935, 1012
SsiI	CCGC	4 cut(s)	5, 20, 80, 418
StyD4I	CCNGG	3 cut(s)	145, 178, 691
TaaI	ACNGT	5 cut(s)	91, 673, 767, 811, 914
TasI	AATT	4 cut(s)	363, 897, 935, 1012
TatI	WGTACW	1 cut(s)	707
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	4 cut(s)	211, 298, 892, 952
Tru1I	TTAA	2 cut(s)	780, 879
Tru9I	TTAA	2 cut(s)	780, 879
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	1 cut(s)	962
TspDTI	ATGAA	2 cut(s)	333, 536
TspGWI	ACGGA	3 cut(s)	84, 85, 778
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	4 cut(s)	48, 529, 632, 863
XapI	RAATTY	1 cut(s)	935
XceI	RCATGY	1 cut(s)	739
XmiI	GTMKAC	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.