Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003182

Physical Location & Seq

Genomic Coordinates Forward (+)

8640582 .. 8643503

Gene Structure 2922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCGCCGCCGTCGCAGCACCGAGACTCATCTCCTTGAAAGCCGTCGCGAAGCTAGGTTTCCGTGAGATCTCTCAAATCCGACAATTGGCTCCGCTTCACTCTGCGATACCTCATTTCGGAATGCTGCGATGTAGATCGCGGCAGCCGTTTTCTACCTCTGTTGTGAAAGCTCAAGCTACTGCTACTGAGCAATCACCAGGGGAAGTTGTTCAAAAAGTGGAATCTCCAGTGGTCGTTATCACTGGTGCCTCGAGAGGGATTGGTAAAGCAATTGCTCTAGCCTTGGGTAAAGCTGGCTGCAAGGTCTTGGTGAATTATGCTAGGTCAGCAAAAGAGGCTGAAGAAGTTGCTAAACAGATTGAAGAATATGGTGGCCAGGCTATCACTTTTGGGGGTGATGTCTCGAAAGCGACTGATGTGGATGCGATGATGAAAACCGCTCTTGACAAATGGGGAACCATTGATGTTGTGGTTAACAATGCAGGAATTACTCGGGATACCTTGTTAATACGAATGAAGCAATCACAATGGGACGAAGTGATTGCTTTGAATCTCACTGGTGTATTTCTCTGTACTCAGGCAGCAGTAAAGATCATGATGAAGAAAAAAAGGGGAAGAATCATCAATATCTCGTCAGTTGTTGGTCTCATTGGTAATATTGGTCAAGCAAACTACGCAGCGGCTAAAGGTGGAGTTATTTCGTTTTCCAAGACTGCTGCCAGAGAAGGTGCGAGCAGGAATATAAATGTCAATGTGGTTTGCCCCGGATTCATTGCATCTGACATGACTGCAGAGCTTGGAGAAGACATGGAAAAGAAAATCCTGGGAACAATCCCATTAGGACGGTATGGAAAAGCTGAAGAAGTGGCTGGCTTGGTAGAATTCTTGGCTCTCAGTCCTGCAGCCAGTTACATAACCGGACAGGCATTCACCATTGATGGAGGTATTGCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

319

Amino Acids

33.55

Weight (kDa)

9.46

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	78 - 271	2.4e-65	short chain dehydrogenase
KR	PF08659	79 - 245	2.9e-22	KR domain
adh_short_C2	PF13561	83 - 317	2.1e-62	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24360
fragaria_vesca	FvH4_4g24340 FvH4_5g07680 FvH4_5g07680
malus_domestica	MD13G1112000.v1.1 MD14G1162300.v1.1 MD16G1111600.v1.1
prunus_persica	Prupe.1G233400_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1
pyrus_communis	pycom13g09740 pycom14g13520 pycom16g09460
rosa_chinensis	RchiOBHm_Chr4g0431201 RchiOBHm_Chr7g0190791
rosa_laevigata	RLG00000004498 RLG00000006920
rosa_multiflora	Rmu_sc0005258.1_g000006 Rmu_sc0032787.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264310 Rroxscaffold_5G00372740
rosa_rugosa	Rorug04G0249100 Rorug06G0506900
rosa_samantha	Rh4AG305200 Rh4BG312500 Rh4CG328800 Rh4DG309100 Rh7AG113600 Rh7BG116100 Rh7CG118700 Rh7CG119000 Rh7DG117600
rosa_wichuraiana	Rw4G026520 Rw7G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccBSI	CCGCTC	1 cut(s)	443
AccII	CGCG	2 cut(s)	50, 142
AciI	CCGC	6 cut(s)	6, 9, 95, 142, 441, 683
AcoI	YGGCCR	2 cut(s)	3, 376
AcsI	RAATTY	1 cut(s)	884
AcuI	CTGAAG	2 cut(s)	363, 882
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	3 cut(s)	88, 119, 258
AgsI	TTSAA	4 cut(s)	40, 215, 365, 553
AjnI	CCWGG	3 cut(s)	199, 378, 825
AluBI	AGCT	6 cut(s)	55, 173, 179, 296, 799, 860
AluI	AGCT	6 cut(s)	55, 173, 179, 296, 799, 860
Alw26I	GTCTC	3 cut(s)	19, 409, 653
Ama87I	CYCGRG	2 cut(s)	253, 495
AoxI	GGCC	2 cut(s)	3, 376
ApeKI	GCWGC	8 cut(s)	17, 127, 145, 300, 584, 680, 719, 905
ApoI	RAATTY	1 cut(s)	884
Asp700I	GAANNNNTTC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	768
AsuHPI	GGTGA	4 cut(s)	189, 325, 410, 925
AvaI	CYCGRG	2 cut(s)	253, 495
BalI	TGGCCA	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	813
BbvI	GCAGC	8 cut(s)	29, 114, 157, 287, 596, 692, 706, 917
BccI	CCATC	1 cut(s)	935
BceAI	ACGGC	2 cut(s)	29, 133
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BciT130I	CCWGG	3 cut(s)	201, 380, 827
BciVI	GTATCC	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	768
BcoDI	GTCTC	3 cut(s)	19, 409, 653
BfaI	CTAG	4 cut(s)	56, 281, 324, 958
BfmI	CTRYAG	2 cut(s)	792, 903
BfuI	GTATCC	1 cut(s)	493
BglII	AGATCT	1 cut(s)	69
Bme1390I	CCNGG	4 cut(s)	201, 380, 768, 827
BmeT110I	CYCGRG	2 cut(s)	253, 495
BmiI	GGNNCC	3 cut(s)	93, 250, 460
BmrFI	CCNGG	4 cut(s)	201, 380, 768, 827
BmsI	GCATC	2 cut(s)	415, 788
BpiI	GAAGAC	1 cut(s)	813
BpmI	CTGGAG	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	768
BsaBI	GATNNNNATC	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	4 cut(s)	200, 285, 766, 826
BsaWI	WCCGGW	1 cut(s)	920
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 119, 258
Bse1I	ACTGG	4 cut(s)	230, 250, 565, 909
Bse3DI	GCAATG	1 cut(s)	774
Bse8I	GATNNNNATC	1 cut(s)	136
BseBI	CCWGG	3 cut(s)	201, 380, 827
BseDI	CCNNGG	4 cut(s)	200, 285, 766, 826
BseGI	GGATG	1 cut(s)	430
BseJI	GATNNNNATC	1 cut(s)	136
BseLI	CCNNNNNNNGG	3 cut(s)	88, 119, 258
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	3 cut(s)	180, 593, 910
BseNI	ACTGG	4 cut(s)	230, 250, 565, 909
BseXI	GCAGC	8 cut(s)	29, 114, 157, 287, 596, 692, 706, 917
Bsh1236I	CGCG	2 cut(s)	50, 142
BshFI	GGCC	2 cut(s)	5, 378
BshNI	GGYRCC	1 cut(s)	248
BsiHKCI	CYCGRG	2 cut(s)	253, 495
BsiSI	CCGG	2 cut(s)	768, 921
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	3 cut(s)	88, 119, 258
BsmAI	GTCTC	3 cut(s)	19, 409, 653
BsmFI	GGGAC	1 cut(s)	548
BsmI	GAATGC	2 cut(s)	129, 929
BsnI	GGCC	2 cut(s)	5, 378
Bso31I	GGTCTC	1 cut(s)	653
BsoBI	CYCGRG	2 cut(s)	253, 495
Bsp143I	GATC	3 cut(s)	69, 137, 594
Bsp68I	TCGCGA	1 cut(s)	50
BspACI	CCGC	6 cut(s)	6, 9, 95, 142, 441, 683
BspANI	GGCC	2 cut(s)	5, 378
BspCNI	CTCAG	3 cut(s)	181, 592, 909
BspFNI	CGCG	2 cut(s)	50, 142
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	3 cut(s)	93, 250, 460
BspMAI	CTGCAG	2 cut(s)	796, 907
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	653
BsrBI	CCGCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	774
BsrI	ACTGG	4 cut(s)	230, 250, 565, 909
BssECI	CCNNGG	4 cut(s)	200, 285, 766, 826
BssMI	GATC	3 cut(s)	69, 137, 594
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	3 cut(s)	201, 380, 827
Bst4CI	ACNGT	1 cut(s)	849
BstC8I	GCNNGC	3 cut(s)	298, 736, 874
BstDEI	CTNAG	3 cut(s)	189, 579, 896
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	2 cut(s)	50, 142
BstKTI	GATC	3 cut(s)	72, 140, 597
BstMAI	GTCTC	3 cut(s)	19, 409, 653
BstMBI	GATC	3 cut(s)	69, 137, 594
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 17, 329, 338, 677
BstNI	CCWGG	3 cut(s)	201, 380, 827
BstSCI	CCNGG	4 cut(s)	199, 378, 766, 825
BstSFI	CTRYAG	2 cut(s)	792, 903
BstUI	CGCG	2 cut(s)	50, 142
BstV1I	GCAGC	8 cut(s)	29, 114, 157, 287, 596, 692, 706, 917
BstV2I	GAAGAC	1 cut(s)	813
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	493
BsuRI	GGCC	2 cut(s)	5, 378
BtgZI	GCGATG	2 cut(s)	145, 443
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	3 cut(s)	237, 243, 558
BtuMI	TCGCGA	1 cut(s)	50
Cac8I	GCNNGC	3 cut(s)	298, 736, 874
CciI	TCATGA	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	576
CviAII	CATG	3 cut(s)	598, 787, 811
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	3 cut(s)	189, 579, 896
DpnI	GATC	3 cut(s)	71, 139, 596
DpnII	GATC	3 cut(s)	69, 137, 594
EaeI	YGGCCR	2 cut(s)	3, 376
Eco130I	CCWWGG	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	653
Eco57I	CTGAAG	2 cut(s)	363, 882
Eco88I	CYCGRG	2 cut(s)	253, 495
EcoRI	GAATTC	1 cut(s)	884
EcoRII	CCWGG	3 cut(s)	199, 378, 825
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	3 cut(s)	601, 790, 814
FaiI	YATR	8 cut(s)	321, 372, 599, 746, 788, 812, 852, 917
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	3 cut(s)	597, 786, 810
FokI	GGATG	1 cut(s)	437
FspBI	CTAG	4 cut(s)	56, 281, 324, 958
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	5, 378
HapII	CCGG	2 cut(s)	768, 921
Hin1II	CATG	3 cut(s)	601, 790, 814
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	5 cut(s)	27, 224, 553, 621, 771
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	2 cut(s)	768, 921
HphI	GGTGA	4 cut(s)	189, 325, 410, 925
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	3 cut(s)	83, 122, 784
Hpy188III	TCNNGA	6 cut(s)	49, 255, 406, 446, 497, 598
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	2 cut(s)	17, 50
HpyAV	CCTTC	1 cut(s)	722
HpyCH4III	ACNGT	1 cut(s)	849
HpyCH4V	TGCA	5 cut(s)	303, 485, 779, 794, 905
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 17, 329, 338, 677
HpyF3I	CTNAG	3 cut(s)	189, 579, 896
Hsp92II	CATG	3 cut(s)	601, 790, 814
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	69, 137, 594
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	8 cut(s)	29, 114, 157, 287, 596, 692, 706, 917
LweI	GCATC	2 cut(s)	415, 788
MaeI	CTAG	4 cut(s)	56, 281, 324, 958
MaeIII	GTNAC	1 cut(s)	911
MalI	GATC	3 cut(s)	71, 139, 596
MbiI	CCGCTC	1 cut(s)	443
MboI	GATC	3 cut(s)	69, 137, 594
MboII	GAAGA	6 cut(s)	356, 377, 616, 630, 818, 875
MfeI	CAATTG	2 cut(s)	86, 273
MflI	RGATCY	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	5 cut(s)	86, 273, 316, 489, 884
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	6 cut(s)	123, 169, 251, 262, 331, 938
Mox20I	TGGCCA	1 cut(s)	378
MroXI	GAANNNNTTC	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	2 cut(s)	477, 509
Msp20I	TGGCCA	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	2 cut(s)	768, 921
MspR9I	CCNGG	4 cut(s)	201, 380, 768, 827
MunI	CAATTG	2 cut(s)	86, 273
Mva1269I	GAATGC	2 cut(s)	129, 929
MvaI	CCWGG	3 cut(s)	201, 380, 827
MvnI	CGCG	2 cut(s)	50, 142
MwoI	GCNNNNNNNGC	5 cut(s)	14, 17, 329, 338, 677
NciI	CCSGG	1 cut(s)	768
NdeII	GATC	3 cut(s)	69, 137, 594
NlaIII	CATG	3 cut(s)	601, 790, 814
NlaIV	GGNNCC	3 cut(s)	93, 250, 460
NruI	TCGCGA	1 cut(s)	50
PaeR7I	CTCGAG	1 cut(s)	253
PagI	TCATGA	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PctI	GAATGC	2 cut(s)	129, 929
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	4 cut(s)	224, 553, 621, 771
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
Psp6I	CCWGG	3 cut(s)	199, 378, 825
PspGI	CCWGG	3 cut(s)	199, 378, 825
PspN4I	GGNNCC	3 cut(s)	93, 250, 460
PstI	CTGCAG	2 cut(s)	796, 907
PsuI	RGATCY	1 cut(s)	69
RruI	TCGCGA	1 cut(s)	50
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
SaqAI	TTAA	2 cut(s)	477, 509
Sau3AI	GATC	3 cut(s)	69, 137, 594
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	4 cut(s)	201, 380, 768, 827
SfaNI	GCATC	2 cut(s)	415, 788
SfcI	CTRYAG	2 cut(s)	792, 903
Sfr274I	CTCGAG	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	253
SmlI	CTYRAG	2 cut(s)	174, 253
SmoI	CTYRAG	2 cut(s)	174, 253
Sse9I	AATT	5 cut(s)	86, 273, 316, 489, 884
SsiI	CCGC	6 cut(s)	6, 9, 95, 142, 441, 683
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	4 cut(s)	56, 281, 324, 958
StyD4I	CCNGG	4 cut(s)	199, 378, 766, 825
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	849
TaqI	TCGA	2 cut(s)	254, 407
TasI	AATT	5 cut(s)	86, 273, 316, 489, 884
TatI	WGTACW	1 cut(s)	575
TauI	GCSGC	4 cut(s)	8, 11, 145, 686
TfiI	GAWTC	4 cut(s)	224, 553, 621, 771
Tru1I	TTAA	2 cut(s)	477, 509
Tru9I	TTAA	2 cut(s)	477, 509
TscAI	CASTG	3 cut(s)	237, 250, 565
TseI	GCWGC	8 cut(s)	17, 127, 145, 300, 584, 680, 719, 905
TspDTI	ATGAA	4 cut(s)	449, 533, 617, 763
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	3 cut(s)	237, 250, 565
XapI	RAATTY	1 cut(s)	884
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XhoI	CTCGAG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	4 cut(s)	56, 281, 324, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.