Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003182

Physical Location & Seq

Genomic Coordinates Forward (+)

62206247 .. 62207855

Gene Structure 1609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0506900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTTGTGGTGCTTAGTGCCTCTGCTACCAATTTCTCTGCACTTCCTTCAGGTAAAGGTTGCAAGTACACAGGTCAAGCAGTGAGAGCACTTCCTATACGCATCATATCGGTGGGGAAAAAGAGATCACAAGGTGTACAACTCGTTGTGGATGACTACATTCAAAGGCTTAAGTTATACTGTAGTGTTGAGGATGTTCACATAAAGAACAATCCTAAGAATGCAAGTGATTGGAGGGCTCAGGTAGATCATGAAGACAGTGCTGTCATGGATCTTATCAGGTCCGATGATTGGGTGGTGTTGTTGGATGAGCGTGGGAAAGACATAGGTTCCATGCAGATGGCTGAGCTGATCGGAGATGCAGGGAATACGGGAGCTTCAAGACTATCATTCTGTGTTGGTGGACCTTATGGACATGGAAAACAATTGCGAGAGCGAGCTAACATATCTATCAAGTTGTCTTCTATGGTATTGAATCATCAAATTGCTATACTTGTTCTCGTAGAACAACTATATAGGTCATGGACCATTCTGAAAGGTCAGAACTATCATCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

185

Amino Acids

20.48

Weight (kDa)

9.17

Isoelectric Point (pI)

22.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPOUT_MTase	PF02590	32 - 184	2.2e-45	Predicted SPOUT methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24360
fragaria_vesca	FvH4_4g24340 FvH4_5g07680 FvH4_5g07680
malus_domestica	MD13G1112000.v1.1 MD14G1162300.v1.1 MD16G1111600.v1.1
prunus_persica	Prupe.1G233400_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1
pyrus_communis	pycom13g09740 pycom14g13520 pycom16g09460
rosa_chinensis	RchiOBHm_Chr4g0431201 RchiOBHm_Chr7g0190791
rosa_laevigata	RLG00000004498 RLG00000006920
rosa_multiflora	Rmu_sc0005258.1_g000006 Rmu_sc0032787.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264310 Rroxscaffold_5G00372740
rosa_rugosa	Rorug04G0249100 Rorug06G0506900
rosa_samantha	Rh4AG305200 Rh4BG312500 Rh4CG328800 Rh4DG309100 Rh7AG113600 Rh7BG116100 Rh7CG118700 Rh7CG119000 Rh7DG117600
rosa_wichuraiana	Rw4G026520 Rw7G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	33
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	2 cut(s)	68, 138
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	164, 381, 475
AluBI	AGCT	3 cut(s)	349, 377, 440
AluI	AGCT	3 cut(s)	349, 377, 440
Alw21I	GWGCWC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	279
AspS9I	GGNCC	3 cut(s)	282, 404, 525
AvaII	GGWCC	3 cut(s)	282, 404, 525
BanII	GRGCYC	1 cut(s)	241
BbsI	GAAGAC	2 cut(s)	261, 453
Bbv12I	GWGCWC	1 cut(s)	91
BccI	CCATC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	556
BfmI	CTRYAG	1 cut(s)	181
BfrI	CTTAAG	1 cut(s)	170
BlpI	GCTNAGC	1 cut(s)	345
Bme18I	GGWCC	3 cut(s)	282, 404, 525
BmgT120I	GGNCC	3 cut(s)	282, 404, 525
BmiI	GGNNCC	1 cut(s)	331
BmsI	GCATC	2 cut(s)	111, 349
BpiI	GAAGAC	2 cut(s)	261, 453
Bpu10I	CCTNAGC	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
BseGI	GGATG	3 cut(s)	157, 199, 313
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	254, 336
BsgI	GTGCAG	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	226
Bsp1286I	GDGCHC	2 cut(s)	91, 241
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	125, 247, 271, 351
Bsp1720I	GCTNAGC	1 cut(s)	345
BspCNI	CTCAG	2 cut(s)	253, 337
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	331
BspPI	GGATC	1 cut(s)	279
BspTI	CTTAAG	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	136
BssMI	GATC	4 cut(s)	125, 247, 271, 351
Bst4CI	ACNGT	2 cut(s)	182, 260
BstAFI	CTTAAG	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	4 cut(s)	14, 216, 240, 345
BstF5I	GGATG	3 cut(s)	157, 199, 313
BstKTI	GATC	4 cut(s)	128, 250, 274, 354
BstMBI	GATC	4 cut(s)	125, 247, 271, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	181
BstV2I	GAAGAC	2 cut(s)	261, 453
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	271
BtgZI	GCGATG	1 cut(s)	536
BtsCI	GGATG	3 cut(s)	157, 199, 313
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 265
Cac8I	GCNNGC	1 cut(s)	438
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	3 cut(s)	282, 404, 525
Csp6I	GTAC	2 cut(s)	67, 137
CviAII	CATG	5 cut(s)	251, 268, 334, 416, 522
CviJI	RGCY	6 cut(s)	169, 239, 344, 349, 377, 440
CviKI_1	RGCY	6 cut(s)	169, 239, 344, 349, 377, 440
CviQI	GTAC	2 cut(s)	67, 137
DdeI	CTNAG	4 cut(s)	14, 216, 240, 345
DpnI	GATC	4 cut(s)	127, 249, 273, 353
DpnII	GATC	4 cut(s)	125, 247, 271, 351
DraIII	CACNNNGTG	1 cut(s)	134
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	241
Eco47I	GGWCC	3 cut(s)	282, 404, 525
Eco57I	CTGAAG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	241
FaeI	CATG	5 cut(s)	254, 271, 337, 419, 525
FatI	CATG	5 cut(s)	250, 267, 333, 415, 521
FokI	GGATG	3 cut(s)	164, 206, 320
FriOI	GRGCYC	1 cut(s)	241
FspBI	CTAG	1 cut(s)	556
Hin1II	CATG	5 cut(s)	254, 271, 337, 419, 525
HinfI	GANTC	1 cut(s)	475
Hpy166II	GTNNAC	4 cut(s)	69, 137, 199, 404
Hpy188I	TCNGA	4 cut(s)	286, 356, 534, 543
Hpy188III	TCNNGA	2 cut(s)	251, 381
Hpy8I	GTNNAC	4 cut(s)	69, 137, 199, 404
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	2 cut(s)	182, 260
HpyCH4V	TGCA	5 cut(s)	41, 63, 224, 337, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	4 cut(s)	14, 216, 240, 345
Hsp92II	CATG	5 cut(s)	254, 271, 337, 419, 525
Kzo9I	GATC	4 cut(s)	125, 247, 271, 351
LmnI	GCTCC	1 cut(s)	374
LpnPI	CCDG	5 cut(s)	36, 57, 227, 265, 348
LweI	GCATC	2 cut(s)	111, 349
MaeI	CTAG	1 cut(s)	556
MalI	GATC	4 cut(s)	127, 249, 273, 353
MboI	GATC	4 cut(s)	125, 247, 271, 351
MboII	GAAGA	2 cut(s)	266, 453
MfeI	CAATTG	1 cut(s)	425
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	91, 241
MluCI	AATT	3 cut(s)	31, 425, 483
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	3 cut(s)	31, 184, 228
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	2 cut(s)	110, 338
MspCI	CTTAAG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	425
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	4 cut(s)	125, 247, 271, 351
NlaIII	CATG	5 cut(s)	254, 271, 337, 419, 525
NlaIV	GGNNCC	1 cut(s)	331
PagI	TCATGA	1 cut(s)	250
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	3 cut(s)	282, 404, 525
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	2 cut(s)	68, 138
RsaNI	GTAC	2 cut(s)	67, 137
RseI	CAYNNNNRTG	2 cut(s)	110, 338
SaqAI	TTAA	1 cut(s)	171
Sau3AI	GATC	4 cut(s)	125, 247, 271, 351
Sau96I	GGNCC	3 cut(s)	282, 404, 525
SduI	GDGCHC	2 cut(s)	91, 241
SfaNI	GCATC	2 cut(s)	111, 349
SfcI	CTRYAG	1 cut(s)	181
SinI	GGWCC	3 cut(s)	282, 404, 525
SmiMI	CAYNNNNRTG	2 cut(s)	110, 338
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	3 cut(s)	31, 425, 483
SspMI	CTAG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	182, 260
TasI	AATT	3 cut(s)	31, 425, 483
TatI	WGTACW	2 cut(s)	66, 136
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	2 cut(s)	87, 265
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	2 cut(s)	87, 265
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	3 cut(s)	282, 404, 525
XspI	CTAG	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.