Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003182

Physical Location & Seq

Genomic Coordinates Forward (+)

393678 .. 397212

Gene Structure 3535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G006500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCGGCCACGATCGCCTTCAACACCGTTGGAGCTCCGGTACGAATCTTCAGCCAATTATCTCACCCACGAAGCTCCTATCCACTTCTCGGCGGGATTCGACTGCATCGCGTTGCCCTGACCAGATTTTCGAGCTCCTTATCCTCCTCCTCTGGCTCTGCAGGAATTAGGGCGCAGGTAGCGGCCGTTGAGCAATCGAGCGCTGCTGTATCTCAGAACATGGAGGCTCCTGTGGTTATCGTCACTGGAGCTTCTAGAGGAATTGGCAAAGCTGTTGCGCTTGCTCTCGGCAAGTCTGGTTGTAAGGTTCTGGTAAACTACGCAAGGTCATCTAAGGAAGCTGAATTAGTTTCCAAGGAGATTGAGGCATCTGGTGGTCAAGCTCTGACATTCGGGGGTGATGTTTCAAAGGAAGAAGATGTAGCGGCAATGATTAAAACTGTGGTTGATGCATGGGGAACAGTTGATGTGTTGGTTAATAATGCTGGAATAACACGGGATGGCTTGTTGATGAGAATGAAAACATCCCAATGGCAGGAGGTTATTGATTTGAATCTTACTGGCGTGTTTCTGTGCACACAGGCTGCAGCGAAAGTTATGATGAAACAGAGAAAGGGAAGAATAATCAATATAGCATCTGTTGTTGGTCTTGTTGGCAATGTTGGACAAGCCAACTACAGTGCTGCAAAGGCCGGAGTAATTGGCTTTACGAAGAGTGTCGCAAAGGAATATTCAAGCAGGAGCATTAATGTCAATGCTGTAGCACCTGGTTTTATTGCATCTGATATGACTGCCAAGCTTGGAGAAGACATAGAAAAGAAGATCTTGGGAACCATCCCCCTAGGGCGATATGGTCAACCTGAAGAAGTCGCAGGACTGGTGGAATTCTTAGCGCTCAATCCTGCTGCCAGTTACATTACTGGACAGGTATTGACCATTGATGGAGGGATGGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

320

Amino Acids

33.15

Weight (kDa)

9.39

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24360
fragaria_vesca	FvH4_4g24340 FvH4_5g07680 FvH4_5g07680
malus_domestica	MD13G1112000.v1.1 MD14G1162300.v1.1 MD16G1111600.v1.1
prunus_persica	Prupe.1G233400_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1
pyrus_communis	pycom13g09740 pycom14g13520 pycom16g09460
rosa_chinensis	RchiOBHm_Chr4g0431201 RchiOBHm_Chr7g0190791
rosa_laevigata	RLG00000004498 RLG00000006920
rosa_multiflora	Rmu_sc0005258.1_g000006 Rmu_sc0032787.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264310 Rroxscaffold_5G00372740
rosa_rugosa	Rorug04G0249100 Rorug06G0506900
rosa_samantha	Rh4AG305200 Rh4BG312500 Rh4CG328800 Rh4DG309100 Rh7AG113600 Rh7BG116100 Rh7CG118700 Rh7CG119000 Rh7DG117600
rosa_wichuraiana	Rw4G026520 Rw7G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	5, 93, 182, 425
AcoI	YGGCCR	2 cut(s)	6, 183
AcsI	RAATTY	1 cut(s)	884
AcuI	CTGAAG	2 cut(s)	34, 882
AfaI	GTAC	1 cut(s)	42
AfeI	AGCGCT	2 cut(s)	202, 894
AfiI	CCNNNNNNNGG	2 cut(s)	89, 535
AgsI	TTSAA	4 cut(s)	22, 408, 553, 735
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	8 cut(s)	35, 75, 135, 251, 272, 341, 383, 799
AluI	AGCT	8 cut(s)	35, 75, 135, 251, 272, 341, 383, 799
Alw21I	GWGCWC	3 cut(s)	37, 137, 578
Alw44I	GTGCAC	1 cut(s)	574
Aor51HI	AGCGCT	2 cut(s)	202, 894
AoxI	GGCC	3 cut(s)	6, 183, 690
ApaLI	GTGCAC	1 cut(s)	574
ApeKI	GCWGC	5 cut(s)	203, 584, 587, 683, 905
ApoI	RAATTY	1 cut(s)	884
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
AseI	ATTAAT	1 cut(s)	747
AspA2I	CCTAGG	1 cut(s)	841
AspLEI	GCGC	4 cut(s)	175, 203, 280, 895
AsuHPI	GGTGA	2 cut(s)	56, 410
AvrII	CCTAGG	1 cut(s)	841
BaeGI	GKGCMC	1 cut(s)	578
BanII	GRGCYC	2 cut(s)	37, 137
BbsI	GAAGAC	1 cut(s)	813
Bbv12I	GWGCWC	3 cut(s)	37, 137, 578
BbvI	GCAGC	5 cut(s)	190, 571, 599, 670, 892
BccI	CCATC	4 cut(s)	494, 842, 935, 943
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	768
BfaI	CTAG	2 cut(s)	255, 842
BfmI	CTRYAG	4 cut(s)	159, 585, 676, 759
BfoI	RGCGCY	2 cut(s)	204, 896
BfuAI	ACCTGC	1 cut(s)	166
BglII	AGATCT	1 cut(s)	822
BisI	GCNGC	8 cut(s)	6, 183, 204, 426, 585, 588, 684, 906
BlnI	CCTAGG	1 cut(s)	841
BlsI	GCNGC	8 cut(s)	7, 184, 205, 427, 586, 589, 685, 907
Bme1390I	CCNGG	1 cut(s)	768
BmiI	GGNNCC	2 cut(s)	228, 832
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	5 cut(s)	115, 377, 439, 644, 788
BpiI	GAAGAC	1 cut(s)	813
BpmI	CTGGAG	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	354, 841
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	3 cut(s)	24, 54, 936
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 535
Bse1I	ACTGG	5 cut(s)	250, 565, 882, 909, 925
Bse3DI	GCAATG	2 cut(s)	435, 664
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	2 cut(s)	354, 841
BseGI	GGATG	4 cut(s)	505, 524, 834, 954
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	89, 535
BseMI	GCAATG	2 cut(s)	435, 664
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	5 cut(s)	250, 565, 882, 909, 925
BseRI	GAGGAG	2 cut(s)	136, 139
BseSI	GKGCMC	1 cut(s)	578
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	5 cut(s)	190, 571, 599, 670, 892
Bsh1236I	CGCG	1 cut(s)	111
Bsh1285I	CGRYCG	2 cut(s)	15, 186
BshFI	GGCC	3 cut(s)	8, 185, 692
BsiEI	CGRYCG	2 cut(s)	15, 186
BsiHKAI	GWGCWC	3 cut(s)	37, 137, 578
BsiSI	CCGG	2 cut(s)	38, 693
BslI	CCNNNNNNNGG	2 cut(s)	89, 535
BsnI	GGCC	3 cut(s)	8, 185, 692
Bsp1286I	GDGCHC	3 cut(s)	37, 137, 578
Bsp143I	GATC	2 cut(s)	12, 822
BspACI	CCGC	4 cut(s)	5, 93, 182, 425
BspANI	GGCC	3 cut(s)	8, 185, 692
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	228, 832
BspMAI	CTGCAG	2 cut(s)	163, 589
BspMI	ACCTGC	1 cut(s)	166
BsrDI	GCAATG	2 cut(s)	435, 664
BsrI	ACTGG	5 cut(s)	250, 565, 882, 909, 925
BssECI	CCNNGG	2 cut(s)	354, 841
BssMI	GATC	2 cut(s)	12, 822
BssT1I	CCWWGG	2 cut(s)	354, 841
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	4 cut(s)	28, 442, 463, 680
Bst6I	CTCTTC	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	3 cut(s)	213, 333, 889
BstF5I	GGATG	4 cut(s)	505, 524, 834, 954
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	2 cut(s)	204, 896
BstHHI	GCGC	4 cut(s)	175, 203, 280, 895
BstKTI	GATC	2 cut(s)	15, 825
BstMBI	GATC	2 cut(s)	12, 822
BstMCI	CGRYCG	2 cut(s)	15, 186
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 179, 689
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	4 cut(s)	159, 585, 676, 759
BstSLI	GKGCMC	1 cut(s)	578
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	5 cut(s)	190, 571, 599, 670, 892
BstV2I	GAAGAC	1 cut(s)	813
BstX2I	RGATCY	1 cut(s)	822
BstYI	RGATCY	1 cut(s)	822
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	8, 185, 692
BtgZI	GCGATG	1 cut(s)	92
BtsCI	GGATG	4 cut(s)	505, 524, 834, 954
BtsIMutI	CAGTG	2 cut(s)	243, 685
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	4 cut(s)	175, 203, 280, 895
CsiI	ACCWGGT	1 cut(s)	766
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	2 cut(s)	220, 453
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	3 cut(s)	213, 333, 889
DpnI	GATC	2 cut(s)	14, 824
DpnII	GATC	2 cut(s)	12, 822
EaeI	YGGCCR	2 cut(s)	6, 183
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
Ecl136II	GAGCTC	2 cut(s)	35, 135
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	2 cut(s)	354, 841
Eco24I	GRGCYC	2 cut(s)	37, 137
Eco47III	AGCGCT	2 cut(s)	202, 894
Eco52I	CGGCCG	1 cut(s)	183
Eco53kI	GAGCTC	2 cut(s)	35, 135
Eco57I	CTGAAG	2 cut(s)	34, 882
EcoICRI	GAGCTC	2 cut(s)	35, 135
EcoRI	GAATTC	1 cut(s)	884
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	2 cut(s)	354, 841
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	2 cut(s)	37, 137
ErhI	CCWWGG	2 cut(s)	354, 841
FaeI	CATG	2 cut(s)	223, 456
FaiI	YATR	7 cut(s)	221, 454, 599, 632, 788, 812, 852
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FatI	CATG	2 cut(s)	219, 452
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	8 cut(s)	6, 183, 204, 426, 585, 588, 684, 906
FokI	GGATG	3 cut(s)	511, 512, 821
FriOI	GRGCYC	2 cut(s)	37, 137
Fsp4HI	GCNGC	8 cut(s)	6, 183, 204, 426, 585, 588, 684, 906
FspBI	CTAG	2 cut(s)	255, 842
GlaI	GCGC	4 cut(s)	174, 202, 279, 894
GluI	GCNGC	8 cut(s)	6, 183, 204, 426, 585, 588, 684, 906
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	2 cut(s)	204, 896
HaeIII	GGCC	3 cut(s)	8, 185, 692
HapII	CCGG	2 cut(s)	38, 693
HhaI	GCGC	4 cut(s)	175, 203, 280, 895
Hin1II	CATG	2 cut(s)	223, 456
Hin6I	GCGC	4 cut(s)	173, 201, 278, 893
HinP1I	GCGC	4 cut(s)	173, 201, 278, 893
HincII	GTYRAC	1 cut(s)	857
HindII	GTYRAC	1 cut(s)	857
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	3 cut(s)	45, 97, 553
HpaII	CCGG	2 cut(s)	38, 693
HphI	GGTGA	2 cut(s)	56, 410
Hpy166II	GTNNAC	3 cut(s)	316, 576, 857
Hpy188I	TCNGA	3 cut(s)	216, 387, 784
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	3 cut(s)	316, 576, 857
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	4 cut(s)	28, 442, 463, 680
HpyCH4V	TGCA	7 cut(s)	106, 161, 452, 576, 587, 686, 779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 179, 689
HpyF3I	CTNAG	3 cut(s)	213, 333, 889
Hsp92II	CATG	2 cut(s)	223, 456
HspAI	GCGC	4 cut(s)	173, 201, 278, 893
Kzo9I	GATC	2 cut(s)	12, 822
LmnI	GCTCC	7 cut(s)	32, 40, 80, 140, 232, 248, 741
Lsp1109I	GCAGC	5 cut(s)	190, 571, 599, 670, 892
LweI	GCATC	5 cut(s)	115, 377, 439, 644, 788
MabI	ACCWGGT	1 cut(s)	766
MaeI	CTAG	2 cut(s)	255, 842
MaeIII	GTNAC	2 cut(s)	241, 911
MalI	GATC	2 cut(s)	14, 824
MboI	GATC	2 cut(s)	12, 822
MboII	GAAGA	8 cut(s)	40, 425, 428, 630, 724, 818, 832, 875
MflI	RGATCY	1 cut(s)	822
MhlI	GDGCHC	3 cut(s)	37, 137, 578
MluCI	AATT	6 cut(s)	56, 165, 261, 344, 699, 884
MmeI	TCCRAC	2 cut(s)	10, 643
MnlI	CCTC	8 cut(s)	154, 157, 160, 217, 251, 358, 532, 938
Mph1103I	ATGCAT	1 cut(s)	454
MseI	TTAA	3 cut(s)	435, 477, 747
MslI	CAYNNNNRTG	1 cut(s)	529
MspI	CCGG	2 cut(s)	38, 693
MspR9I	CCNGG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	14, 179, 689
NdeII	GATC	2 cut(s)	12, 822
NlaIII	CATG	2 cut(s)	223, 456
NlaIV	GGNNCC	2 cut(s)	228, 832
NmeAIII	GCCGAG	2 cut(s)	69, 267
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	454
PfeI	GAWTC	3 cut(s)	45, 97, 553
PkrI	GCNGC	8 cut(s)	7, 184, 205, 427, 586, 589, 685, 907
Ple19I	CGATCG	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	747
Psp124BI	GAGCTC	2 cut(s)	37, 137
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	2 cut(s)	228, 832
PstI	CTGCAG	2 cut(s)	163, 589
PsuI	RGATCY	1 cut(s)	822
PvuI	CGATCG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	529
SacI	GAGCTC	2 cut(s)	37, 137
SaqAI	TTAA	3 cut(s)	435, 477, 747
SatI	GCNGC	8 cut(s)	6, 183, 204, 426, 585, 588, 684, 906
Sau3AI	GATC	2 cut(s)	12, 822
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	3 cut(s)	37, 137, 578
SexAI	ACCWGGT	1 cut(s)	766
SfaNI	GCATC	5 cut(s)	115, 377, 439, 644, 788
SfcI	CTRYAG	4 cut(s)	159, 585, 676, 759
SmiMI	CAYNNNNRTG	1 cut(s)	529
Sse9I	AATT	6 cut(s)	56, 165, 261, 344, 699, 884
SsiI	CCGC	4 cut(s)	5, 93, 182, 425
SspI	AATATT	1 cut(s)	731
SspMI	CTAG	2 cut(s)	255, 842
SstI	GAGCTC	2 cut(s)	37, 137
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	2 cut(s)	354, 841
TaaI	ACNGT	4 cut(s)	28, 442, 463, 680
TaqI	TCGA	3 cut(s)	100, 131, 197
TasI	AATT	6 cut(s)	56, 165, 261, 344, 699, 884
TauI	GCSGC	3 cut(s)	8, 185, 428
TfiI	GAWTC	3 cut(s)	45, 97, 553
Tru1I	TTAA	3 cut(s)	435, 477, 747
Tru9I	TTAA	3 cut(s)	435, 477, 747
TscAI	CASTG	2 cut(s)	250, 685
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	5 cut(s)	203, 584, 587, 683, 905
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	533, 617
TspRI	CASTG	2 cut(s)	250, 685
VneI	GTGCAC	1 cut(s)	574
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	1 cut(s)	884
XbaI	TCTAGA	1 cut(s)	254
XmaJI	CCTAGG	1 cut(s)	841
XspI	CTAG	2 cut(s)	255, 842
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.