Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003182

Physical Location & Seq

Genomic Coordinates Reverse (-)

42050515 .. 42050883

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0249100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTTTTGTATTACGAAGAAAATTATGCATACTAGAATTCACCTGACCAAATGGCAAAAGGAGGTTTTCAAGGGTAGGCAACTACAGATGTTGGGCATCCGTGCTAGGTTGGAAGAGCTACTAAATGTATTCCCATCAGGGACTGTACAAGATGAGAAGAAGGAGCTGACAGATAAGCTTCAGGATTTGTTGTTTCAGGAGGAATTGTTTTGGAAGCAGCGCTCGAAAATTACATGGCTCAAGGAAGGGGATCGAAACACCGGTTTTTTCACCGGAAAACAGAGAATAGGAAGCGTAAGAACTCTTTGCAAGGTTTGTTTGATGAAGCGGGGCAATGGCAGGAGGATGATGACGGGATTGAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

122

Amino Acids

14.52

Weight (kDa)

10.37

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24360
fragaria_vesca	FvH4_4g24340 FvH4_5g07680 FvH4_5g07680
malus_domestica	MD13G1112000.v1.1 MD14G1162300.v1.1 MD16G1111600.v1.1
prunus_persica	Prupe.1G233400_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1
pyrus_communis	pycom13g09740 pycom14g13520 pycom16g09460
rosa_chinensis	RchiOBHm_Chr4g0431201 RchiOBHm_Chr7g0190791
rosa_laevigata	RLG00000004498 RLG00000006920
rosa_multiflora	Rmu_sc0005258.1_g000006 Rmu_sc0032787.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264310 Rroxscaffold_5G00372740
rosa_rugosa	Rorug04G0249100 Rorug06G0506900
rosa_samantha	Rh4AG305200 Rh4BG312500 Rh4CG328800 Rh4DG309100 Rh7AG113600 Rh7BG116100 Rh7CG118700 Rh7CG119000 Rh7DG117600
rosa_wichuraiana	Rw4G026520 Rw7G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	147
AfeI	AGCGCT	1 cut(s)	221
AgeI	ACCGGT	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	3 cut(s)	118, 166, 178
AluI	AGCT	3 cut(s)	118, 166, 178
AlwI	GGATC	1 cut(s)	258
AlwNI	CAGNNNCTG	1 cut(s)	143
Aor51HI	AGCGCT	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	36
AsiGI	ACCGGT	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	32, 262
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	142
BfaI	CTAG	2 cut(s)	33, 105
BfmI	CTRYAG	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	223
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
BmsI	GCATC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	224
BsaWI	WCCGGW	2 cut(s)	260, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bse118I	RCCGGY	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	340
BseGI	GGATG	2 cut(s)	96, 351
BseMI	GCAATG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	229
BshTI	ACCGGT	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	261, 273
BslFI	GGGAC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	154
Bsp1407I	TGTACA	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	258
BspQI	GCTCTTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	260
BsrGI	TGTACA	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	260
BssMI	GATC	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	108
BstAUI	TGTACA	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	96, 351
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	96, 351
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	146
CspAI	ACCGGT	1 cut(s)	260
CviAII	CATG	1 cut(s)	234
CviJI	RGCY	4 cut(s)	118, 166, 178, 238
CviKI_1	RGCY	4 cut(s)	118, 166, 178, 238
CviQI	GTAC	1 cut(s)	146
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco47III	AGCGCT	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	30
FaeI	CATG	1 cut(s)	237
FaiI	YATR	3 cut(s)	26, 30, 235
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	1 cut(s)	233
FauI	CCCGC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	2 cut(s)	83, 358
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	2 cut(s)	33, 105
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	218
HaeII	RGCGCY	1 cut(s)	223
HapII	CCGG	2 cut(s)	261, 273
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	237
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	176
HpaII	CCGG	2 cut(s)	261, 273
HphI	GGTGA	2 cut(s)	32, 262
Hpy188III	TCNNGA	2 cut(s)	182, 197
HpyAV	CCTTC	2 cut(s)	154, 239
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	28, 309
Hsp92II	CATG	1 cut(s)	237
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	250
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	7 cut(s)	56, 123, 167, 182, 274, 286, 325
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	2 cut(s)	33, 105
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	3 cut(s)	28, 125, 169
MluCI	AATT	4 cut(s)	21, 36, 203, 228
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	55, 193, 336
Mph1103I	ATGCAT	1 cut(s)	30
MspI	CCGG	2 cut(s)	261, 273
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	237
NsiI	ATGCAT	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	108
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	219
PstNI	CAGNNNCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	108
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	1 cut(s)	250
SetI	ASST	7 cut(s)	45, 66, 110, 120, 168, 180, 315
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	4 cut(s)	21, 36, 203, 228
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	2 cut(s)	33, 105
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	224, 253
TasI	AATT	4 cut(s)	21, 36, 203, 228
TatI	WGTACW	1 cut(s)	145
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	89
XapI	RAATTY	1 cut(s)	36
XspI	CTAG	2 cut(s)	33, 105
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.