MD13G1112000.v1.1

3-oxoacyl- acyl-carrier-protein reductase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
8138958 .. 8142074
3117 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1112000.v1.1.491

Sequence Viewer

Length: 975 bp
ATGGCTTCCATCGCTGCATCAAACGTCGTCGCTCTAAAGTCCGCCGGTAAATTTGGAGCTCCCGCCGACGCCAGGGCCTGCCAGTTTAAGCAATGGGCCCCGATTGGCGGCGCAGCCGGATCGGGTCGGAGCATTGGGCTTCAGTACAGATCCAAGCGCTCCTCCACTTCCTCTGGTCACGTGAGGGCTCAGGTGGCGACGCTTGAGCAAGCGAGCGCCGGGGAAGCCAAAATCGTGGAGGGTCCGGTGGTGGTGGTGACCGGAGCTTCTAGAGGCATTGGCAGAGCAATTGCTCTGTCTTTGGGCAAAGCTGGTTGCAGGGTCCTCGTTAATTACGCAAGGTCATCGAAGGAGGCCGAGGAGGTTTCCAAAGAGATTGAGGCGTTCGGTGGACAAGCTATTACTTTCGGAGGAGATGTTTCGAAAGAAGAAGATGTTGAGGCGATGCTCAAAACAGCGCTTGATGCTTGGGGAACCGTTGATGTACTGATAAACAATGCAGGAATTACCAGGGATGGTCTATTGATGAGAATGAAGTTAAAACAATGGCAGGAGGTCATTGATCTAAATCTTACTGGTGTATATCTATGCACCCAGGCAGCAGCTAAAATCATGATGAAGAAGAAGAAGGGAAGGATTATCAATATAGCATCCGTTGTTGGTCTAGTTGGAAATGTTGGACAAGCCAACTACAGTGCTGCAAAAGCAGGAGTAATTGGTCTGACCAAGACTGTTGCTAAGGAGTACTCCAGCAGACACATCAATGTTAATGCTGTTGCCCCGGGCTTTATTGCATCAGACATGACTGCCAAGCTAGGCGATGACATTGAGAAGAAAATTTTGGAGACTATCCCATTAGGAAGATACGGCCAACCCGACGAAGTTGCTGGACTGGTGGAATTCTTGGCCCTTAGTCCAGCGGCCAGTTACATGACCGGACAGGTGCTCACCATTGATGGAGGGATGGTGATGTAG

Protein Analysis

325

Amino Acids

33.73

Weight (kDa)

9.3

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 83 - 275 3.2e-65 short chain dehydrogenase
KR PF08659 84 - 238 4e-21 KR domain
adh_short_C2 PF13561 88 - 322 5.2e-65 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 42, 63, 108, 920
AclWI GGATC 2 cut(s) 127, 144
AcoI YGGCCR 2 cut(s) 868, 921
AcsI RAATTY 3 cut(s) 50, 837, 899
AcuI CTGAAG 1 cut(s) 125
AcvI CACGTG 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 3 cut(s) 146, 486, 746
AfeI AGCGCT 2 cut(s) 158, 459
AfiI CCNNNNNNNGG 2 cut(s) 72, 107
AjnI CCWGG 3 cut(s) 71, 509, 594
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AluBI AGCT 6 cut(s) 59, 266, 311, 398, 605, 814
AluI AGCT 6 cut(s) 59, 266, 311, 398, 605, 814
Alw21I GWGCWC 2 cut(s) 61, 948
Alw26I GTCTC 1 cut(s) 839
AlwI GGATC 2 cut(s) 127, 144
AlwNI CAGNNNCTG 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 781
Aor51HI AGCGCT 2 cut(s) 158, 459
AoxI GGCC 6 cut(s) 75, 96, 354, 868, 906, 921
ApaI GGGCCC 1 cut(s) 100
ApeKI GCWGC 5 cut(s) 14, 113, 599, 602, 698
ApoI RAATTY 3 cut(s) 50, 837, 899
AspLEI GCGC 4 cut(s) 113, 159, 218, 460
AspS9I GGNCC 6 cut(s) 75, 96, 97, 242, 322, 907
AsuC2I CCSGG 3 cut(s) 220, 782, 783
AsuHPI GGTGA 2 cut(s) 268, 940
AsuII TTCGAA 1 cut(s) 422
AvaI CYCGRG 1 cut(s) 781
AvaII GGWCC 2 cut(s) 242, 322
BaeGI GKGCMC 1 cut(s) 100
BanII GRGCYC 3 cut(s) 61, 100, 190
BbrPI CACGTG 1 cut(s) 181
Bbv12I GWGCWC 2 cut(s) 61, 948
BbvI GCAGC 4 cut(s) 125, 611, 614, 685
BccI CCATC 4 cut(s) 17, 509, 950, 958
BceAI ACGGC 1 cut(s) 883
BcgI CGANNNNNNTGC 8 cut(s) 102, 136, 307, 327, 341, 361, 866, 900
BciT130I CCWGG 3 cut(s) 73, 511, 596
BcnI CCSGG 3 cut(s) 220, 782, 783
BcoDI GTCTC 1 cut(s) 839
BfaI CTAG 3 cut(s) 270, 665, 815
BfmI CTRYAG 1 cut(s) 691
BfoI RGCGCY 3 cut(s) 160, 219, 461
BisI GCNGC 7 cut(s) 15, 109, 114, 600, 603, 699, 921
BlsI GCNGC 7 cut(s) 16, 110, 115, 601, 604, 700, 922
BmcAI AGTACT 1 cut(s) 746
Bme1390I CCNGG 6 cut(s) 73, 220, 511, 596, 782, 783
Bme18I GGWCC 2 cut(s) 242, 322
BmeT110I CYCGRG 1 cut(s) 781
BmgT120I GGNCC 6 cut(s) 75, 96, 97, 242, 322, 907
BmiI GGNNCC 5 cut(s) 98, 99, 243, 323, 475
BmrFI CCNGG 6 cut(s) 73, 220, 511, 596, 782, 783
BmsI GCATC 5 cut(s) 26, 435, 454, 659, 803
BpmI CTGGAG 1 cut(s) 733
Bpu10I CCTNAGC 2 cut(s) 189, 738
Bpu14I TTCGAA 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 3 cut(s) 220, 782, 783
BsaAI YACGTR 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 7 cut(s) 72, 219, 357, 510, 594, 780, 781
BsaWI WCCGGW 3 cut(s) 244, 260, 935
BsaXI ACNNNNNCTCC 3 cut(s) 402, 432, 951
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 107
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 4 cut(s) 82, 580, 897, 924
Bse3DI GCAATG 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 3 cut(s) 73, 511, 596
BseDI CCNNGG 7 cut(s) 72, 219, 357, 510, 594, 780, 781
BseGI GGATG 3 cut(s) 520, 650, 969
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 2 cut(s) 72, 107
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 4 cut(s) 82, 580, 897, 924
BseRI GAGGAG 3 cut(s) 151, 374, 426
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 4 cut(s) 125, 611, 614, 685
BshFI GGCC 6 cut(s) 77, 98, 356, 870, 908, 923
BsiHKAI GWGCWC 2 cut(s) 61, 948
BsiHKCI CYCGRG 1 cut(s) 781
BsiSI CCGG 7 cut(s) 45, 117, 219, 245, 261, 782, 936
BslI CCNNNNNNNGG 2 cut(s) 72, 107
BsmAI GTCTC 1 cut(s) 839
BsnI GGCC 6 cut(s) 77, 98, 356, 870, 908, 923
BsoBI CYCGRG 1 cut(s) 781
Bsp119I TTCGAA 1 cut(s) 422
Bsp120I GGGCCC 1 cut(s) 96
Bsp1286I GDGCHC 4 cut(s) 61, 100, 190, 948
Bsp143I GATC 3 cut(s) 119, 149, 562
BspACI CCGC 4 cut(s) 42, 63, 108, 920
BspANI GGCC 6 cut(s) 77, 98, 356, 870, 908, 923
BspCNI CTCAG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 612
BspLI GGNNCC 5 cut(s) 98, 99, 243, 323, 475
BspPI GGATC 2 cut(s) 127, 144
BspT104I TTCGAA 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 4 cut(s) 82, 580, 897, 924
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 7 cut(s) 72, 219, 357, 510, 594, 780, 781
BssMI GATC 3 cut(s) 119, 149, 562
BssNI GRCGYC 1 cut(s) 69
Bst2UI CCWGG 3 cut(s) 73, 511, 596
Bst4CI ACNGT 3 cut(s) 478, 695, 733
BstACI GRCGYC 1 cut(s) 69
BstBAI YACGTR 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 422
BstC8I GCNNGC 3 cut(s) 79, 210, 214
BstDEI CTNAG 3 cut(s) 189, 738, 911
BstEII GGTNACC 1 cut(s) 256
BstF5I GGATG 3 cut(s) 520, 650, 969
BstH2I RGCGCY 3 cut(s) 160, 219, 461
BstHHI GCGC 4 cut(s) 113, 159, 218, 460
BstKTI GATC 3 cut(s) 122, 152, 565
BstMAI GTCTC 1 cut(s) 839
BstMBI GATC 3 cut(s) 119, 149, 562
BstMWI GCNNNNNNNGC 5 cut(s) 11, 194, 224, 464, 704
BstNI CCWGG 3 cut(s) 73, 511, 596
BstPI GGTNACC 1 cut(s) 256
BstSCI CCNGG 6 cut(s) 71, 218, 509, 594, 780, 781
BstSFI CTRYAG 1 cut(s) 691
BstSLI GKGCMC 1 cut(s) 100
BstV1I GCAGC 4 cut(s) 125, 611, 614, 685
BstX2I RGATCY 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 1 cut(s) 149
BsuRI GGCC 6 cut(s) 77, 98, 356, 870, 908, 923
BtgZI GCGATG 2 cut(s) 458, 834
BtsCI GGATG 3 cut(s) 520, 650, 969
BtsIMutI CAGTG 1 cut(s) 700
Cac8I GCNNGC 3 cut(s) 79, 210, 214
CaiI CAGNNNCTG 1 cut(s) 78
CciI TCATGA 1 cut(s) 612
CfoI GCGC 4 cut(s) 113, 159, 218, 460
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 6 cut(s) 75, 96, 97, 242, 322, 907
Cfr9I CCCGGG 1 cut(s) 781
CseI GACGC 2 cut(s) 77, 208
Csp6I GTAC 3 cut(s) 145, 485, 745
CviAII CATG 3 cut(s) 613, 802, 931
CviQI GTAC 3 cut(s) 145, 485, 745
DdeI CTNAG 3 cut(s) 189, 738, 911
DpnI GATC 3 cut(s) 121, 151, 564
DpnII GATC 3 cut(s) 119, 149, 562
EaeI YGGCCR 2 cut(s) 868, 921
EciI GGCGGA 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 59
Eco24I GRGCYC 3 cut(s) 61, 100, 190
Eco47I GGWCC 2 cut(s) 242, 322
Eco47III AGCGCT 2 cut(s) 158, 459
Eco53kI GAGCTC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 125
Eco72I CACGTG 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 781
Eco91I GGTNACC 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 59
EcoO109I RGGNCCY 3 cut(s) 75, 97, 322
EcoO65I GGTNACC 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 899
EcoRII CCWGG 3 cut(s) 71, 509, 594
EcoT38I GRGCYC 3 cut(s) 61, 100, 190
FaeI CATG 3 cut(s) 616, 805, 934
FaiI YATR 6 cut(s) 583, 589, 614, 647, 803, 932
FatI CATG 3 cut(s) 612, 801, 930
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 7 cut(s) 15, 109, 114, 600, 603, 699, 921
FokI GGATG 2 cut(s) 527, 637
FriOI GRGCYC 3 cut(s) 61, 100, 190
Fsp4HI GCNGC 7 cut(s) 15, 109, 114, 600, 603, 699, 921
FspBI CTAG 3 cut(s) 270, 665, 815
GlaI GCGC 4 cut(s) 112, 158, 217, 459
GluI GCNGC 7 cut(s) 15, 109, 114, 600, 603, 699, 921
GsuI CTGGAG 1 cut(s) 733
HaeII RGCGCY 3 cut(s) 160, 219, 461
HaeIII GGCC 6 cut(s) 77, 98, 356, 870, 908, 923
HapII CCGG 7 cut(s) 45, 117, 219, 245, 261, 782, 936
HgaI GACGC 2 cut(s) 77, 208
HhaI GCGC 4 cut(s) 113, 159, 218, 460
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 3 cut(s) 616, 805, 934
Hin6I GCGC 4 cut(s) 111, 157, 216, 458
HinP1I GCGC 4 cut(s) 111, 157, 216, 458
HpaII CCGG 7 cut(s) 45, 117, 219, 245, 261, 782, 936
HphI GGTGA 2 cut(s) 268, 940
Hpy166II GTNNAC 1 cut(s) 392
Hpy188I TCNGA 4 cut(s) 129, 410, 723, 799
Hpy188III TCNNGA 2 cut(s) 270, 613
Hpy8I GTNNAC 1 cut(s) 392
Hpy99I CGWCG 5 cut(s) 29, 32, 71, 202, 881
HpyAV CCTTC 3 cut(s) 343, 622, 627
HpyCH4III ACNGT 3 cut(s) 478, 695, 733
HpyCH4IV ACGT 2 cut(s) 24, 180
HpyCH4V TGCA 6 cut(s) 17, 318, 500, 591, 701, 794
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 194, 224, 464, 704
HpyF3I CTNAG 3 cut(s) 189, 738, 911
HpySE526I ACGT 2 cut(s) 24, 180
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 3 cut(s) 616, 805, 934
HspAI GCGC 4 cut(s) 111, 157, 216, 458
Kzo9I GATC 3 cut(s) 119, 149, 562
LmnI GCTCC 5 cut(s) 56, 64, 129, 164, 263
Lsp1109I GCAGC 4 cut(s) 125, 611, 614, 685
LweI GCATC 5 cut(s) 26, 435, 454, 659, 803
MaeI CTAG 3 cut(s) 270, 665, 815
MaeII ACGT 2 cut(s) 24, 180
MaeIII GTNAC 3 cut(s) 176, 256, 926
MalI GATC 3 cut(s) 121, 151, 564
MboI GATC 3 cut(s) 119, 149, 562
MboII GAAGA 7 cut(s) 440, 443, 631, 634, 637, 844, 873
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 4 cut(s) 61, 100, 190, 948
MluCI AATT 7 cut(s) 50, 288, 331, 504, 714, 837, 899
MmeI TCCRAC 3 cut(s) 107, 649, 658
MseI TTAA 4 cut(s) 87, 330, 539, 768
MslI CAYNNNNRTG 1 cut(s) 762
MspA1I CMGCKG 1 cut(s) 920
MspI CCGG 7 cut(s) 45, 117, 219, 245, 261, 782, 936
MspR9I CCNGG 6 cut(s) 73, 220, 511, 596, 782, 783
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 3 cut(s) 73, 511, 596
MwoI GCNNNNNNNGC 5 cut(s) 11, 194, 224, 464, 704
NciI CCSGG 3 cut(s) 220, 782, 783
NdeII GATC 3 cut(s) 119, 149, 562
NlaIII CATG 3 cut(s) 616, 805, 934
NlaIV GGNNCC 5 cut(s) 98, 99, 243, 323, 475
NmeAIII GCCGAG 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 176, 256
NspV TTCGAA 1 cut(s) 422
PagI TCATGA 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 873
PkrI GCNGC 7 cut(s) 16, 110, 115, 601, 604, 700, 922
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 181
PpuMI RGGWCCY 1 cut(s) 322
Psp124BI GAGCTC 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 3 cut(s) 71, 509, 594
PspCI CACGTG 1 cut(s) 181
PspEI GGTNACC 1 cut(s) 256
PspGI CCWGG 3 cut(s) 71, 509, 594
PspN4I GGNNCC 5 cut(s) 98, 99, 243, 323, 475
PspOMI GGGCCC 1 cut(s) 96
PspPI GGNCC 6 cut(s) 75, 96, 97, 242, 322, 907
PspPPI RGGWCCY 1 cut(s) 322
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 3 cut(s) 146, 486, 746
RsaNI GTAC 3 cut(s) 145, 485, 745
RseI CAYNNNNRTG 1 cut(s) 762
SacI GAGCTC 1 cut(s) 61
SaqAI TTAA 4 cut(s) 87, 330, 539, 768
SatI GCNGC 7 cut(s) 15, 109, 114, 600, 603, 699, 921
Sau3AI GATC 3 cut(s) 119, 149, 562
Sau96I GGNCC 6 cut(s) 75, 96, 97, 242, 322, 907
ScaI AGTACT 1 cut(s) 746
ScrFI CCNGG 6 cut(s) 73, 220, 511, 596, 782, 783
SduI GDGCHC 4 cut(s) 61, 100, 190, 948
SfaNI GCATC 5 cut(s) 26, 435, 454, 659, 803
SfcI CTRYAG 1 cut(s) 691
SfuI TTCGAA 1 cut(s) 422
SinI GGWCC 2 cut(s) 242, 322
SmaI CCCGGG 1 cut(s) 783
SmiMI CAYNNNNRTG 1 cut(s) 762
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 7 cut(s) 50, 288, 331, 504, 714, 837, 899
SsiI CCGC 4 cut(s) 42, 63, 108, 920
SspMI CTAG 3 cut(s) 270, 665, 815
SstI GAGCTC 1 cut(s) 61
StyD4I CCNGG 6 cut(s) 71, 218, 509, 594, 780, 781
TaaI ACNGT 3 cut(s) 478, 695, 733
TaiI ACGT 2 cut(s) 27, 183
TaqI TCGA 2 cut(s) 347, 422
TasI AATT 7 cut(s) 50, 288, 331, 504, 714, 837, 899
TatI WGTACW 3 cut(s) 144, 484, 744
TauI GCSGC 2 cut(s) 111, 923
Tru1I TTAA 4 cut(s) 87, 330, 539, 768
Tru9I TTAA 4 cut(s) 87, 330, 539, 768
TscAI CASTG 1 cut(s) 700
TseFI GTSAC 2 cut(s) 176, 256
TseI GCWGC 5 cut(s) 14, 113, 599, 602, 698
Tsp45I GTSAC 2 cut(s) 176, 256
TspDTI ATGAA 2 cut(s) 548, 632
TspGWI ACGGA 1 cut(s) 643
TspMI CCCGGG 1 cut(s) 781
TspRI CASTG 1 cut(s) 700
VpaK11BI GGWCC 2 cut(s) 242, 322
XapI RAATTY 3 cut(s) 50, 837, 899
XbaI TCTAGA 1 cut(s) 269
XmaI CCCGGG 1 cut(s) 781
XspI CTAG 3 cut(s) 270, 665, 815
ZrmI AGTACT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.