Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003182

Physical Location & Seq

Genomic Coordinates Forward (+)

52741465 .. 52745005

Gene Structure 3541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G026520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCCCATTTGTTTAATTCCAATGGTTGTTGTGCTACGTCCTCTTTGAAGCCCGCCGGAATCAAATTCGGAGCCGCCGGCGATGCCAGGGCTTGCCATTTGAAGCAGTGGTCGCCGGTTTCGAGTACGGTTGGATCGGGCCGGAGCATTGGCCTTCAGTACAGATCCAAGAGCTCCTTCACTTCCTGCGGTGGTGTGAGGGCTCAGGTGGCCACGCTTGAACAATCAAGTACAGGAGCAGTCCAAAATGTGGAGGCTCCTGTTGTGGTGGTGACTGGAGCTTCTAGAGGCATTGGCAAAGCCATTGCTCTGGCTTTGGGCAAAGCTGGTTGCAAGGTTCTTGTTAATTATGCTAGGTCATCAAAGGAGGCCGAAGAGGTTGCCAAAGAGATTGAGGCAGTTGGTGGACAAGCTCTTACTTTTGGAGGAGATGTTTCAAAAGAAGCAGATGTTGAAGCGATGCTCAAAACTGCAGTTGATGCTTGGGGAACTGTTGATATACTGATCAACAATGCAGGAATTACTAGAGATGGTCTGTTGATGAGAATGAAGTTAAAGCAATGGCAGGATGTCATTGACCTAAATCTTACTGGTGTATATTTATGTACCCAGGCAGCAGCCAAAATTATGATGAAGAAGAAGAAGGGAAGGATCATCAATATAGCATCGGTTGTTGGTTTAGTTGGCAATGTTGGACAAGCCAACTATAGTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAGACTGTTGCTAAGGAGTATTCGAGCAGAAACATCAATGTTAATGCTGTTGCCCCCGGCTTTATTGCATCGGATATGACTGCTGAGCTAGGGGCTGACCTTGAGAAGAAAATTTTACAGACCATCCCCTTAGGAAGATATGGTCAACCTGAAGAGATTGCTGGACTGGTGGAATTCTTGGCCCTTAGTCCTGCAGCCAGCTACATGACTGGACAGGTACTCACCATTGATGGAGGGATGGTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

329

Amino Acids

34.13

Weight (kDa)

9.13

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	88 - 280	2.5e-66	short chain dehydrogenase
KR	PF08659	89 - 244	1.2e-19	KR domain
adh_short_C2	PF13561	93 - 327	7e-65	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24360
fragaria_vesca	FvH4_4g24340 FvH4_5g07680 FvH4_5g07680
malus_domestica	MD13G1112000.v1.1 MD14G1162300.v1.1 MD16G1111600.v1.1
prunus_persica	Prupe.1G233400_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1
pyrus_communis	pycom13g09740 pycom14g13520 pycom16g09460
rosa_chinensis	RchiOBHm_Chr4g0431201 RchiOBHm_Chr7g0190791
rosa_laevigata	RLG00000004498 RLG00000006920
rosa_multiflora	Rmu_sc0005258.1_g000006 Rmu_sc0032787.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264310 Rroxscaffold_5G00372740
rosa_rugosa	Rorug04G0249100 Rorug06G0506900
rosa_samantha	Rh4AG305200 Rh4BG312500 Rh4CG328800 Rh4DG309100 Rh7AG113600 Rh7BG116100 Rh7CG118700 Rh7CG119000 Rh7DG117600
rosa_wichuraiana	Rw4G026520 Rw7G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	250
AciI	CCGC	3 cut(s)	54, 75, 189
AclWI	GGATC	3 cut(s)	142, 159, 659
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	3 cut(s)	65, 852, 914
AcuI	CTGAAG	2 cut(s)	140, 912
AfaI	GTAC	5 cut(s)	127, 161, 232, 607, 960
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	5 cut(s)	49, 103, 221, 438, 455
AjnI	CCWGG	2 cut(s)	86, 609
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	6 cut(s)	174, 281, 326, 413, 829, 942
AluI	AGCT	6 cut(s)	174, 281, 326, 413, 829, 942
Alw21I	GWGCWC	1 cut(s)	176
AlwI	GGATC	3 cut(s)	142, 159, 659
AoxI	GGCC	7 cut(s)	3, 139, 151, 210, 369, 733, 921
ApeKI	GCWGC	4 cut(s)	614, 617, 713, 935
ApoI	RAATTY	3 cut(s)	65, 852, 914
AspS9I	GGNCC	3 cut(s)	4, 139, 922
AsuC2I	CCSGG	1 cut(s)	798
AsuHPI	GGTGA	2 cut(s)	283, 955
AxyI	CCTNAGG	1 cut(s)	871
BalI	TGGCCA	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	176, 205
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	4 cut(s)	626, 629, 700, 947
BccI	CCATC	4 cut(s)	524, 872, 965, 973
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	2 cut(s)	88, 611
BclI	TGATCA	1 cut(s)	504
BcnI	CCSGG	1 cut(s)	798
BfaI	CTAG	4 cut(s)	285, 354, 525, 830
BfmI	CTRYAG	3 cut(s)	471, 706, 933
BisI	GCNGC	5 cut(s)	75, 615, 618, 714, 936
BlpI	GCTNAGC	1 cut(s)	825
BlsI	GCNGC	5 cut(s)	76, 616, 619, 715, 937
Bme1390I	CCNGG	3 cut(s)	88, 611, 798
BmgT120I	GGNCC	3 cut(s)	4, 139, 922
BmiI	GGNNCC	2 cut(s)	73, 258
BmrFI	CCNGG	3 cut(s)	88, 611, 798
BmsI	GCATC	5 cut(s)	73, 450, 469, 674, 818
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	2 cut(s)	204, 753
Bpu1102I	GCTNAGC	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	863
BpuMI	CCSGG	1 cut(s)	798
BsaJI	CCNNGG	3 cut(s)	87, 609, 796
BsaXI	ACNNNNNCTCC	3 cut(s)	417, 447, 966
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse118I	RCCGGY	2 cut(s)	77, 115
Bse1I	ACTGG	4 cut(s)	280, 595, 912, 955
Bse21I	CCTNAGG	1 cut(s)	871
Bse3DI	GCAATG	3 cut(s)	303, 566, 694
BseBI	CCWGG	2 cut(s)	88, 611
BseDI	CCNNGG	3 cut(s)	87, 609, 796
BseGI	GGATG	3 cut(s)	574, 864, 984
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	3 cut(s)	303, 566, 694
BseMII	CTCAG	2 cut(s)	218, 816
BseNI	ACTGG	4 cut(s)	280, 595, 912, 955
BseRI	GAGGAG	1 cut(s)	441
BseXI	GCAGC	4 cut(s)	626, 629, 700, 947
BshFI	GGCC	7 cut(s)	5, 141, 153, 212, 371, 735, 923
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	5 cut(s)	57, 78, 116, 142, 798
BslI	CCNNNNNNNGG	1 cut(s)	250
BsnI	GGCC	7 cut(s)	5, 141, 153, 212, 371, 735, 923
Bsp1286I	GDGCHC	2 cut(s)	176, 205
Bsp143I	GATC	4 cut(s)	134, 164, 504, 651
Bsp1720I	GCTNAGC	1 cut(s)	825
BspACI	CCGC	3 cut(s)	54, 75, 189
BspANI	GGCC	7 cut(s)	5, 141, 153, 212, 371, 735, 923
BspCNI	CTCAG	2 cut(s)	217, 817
BspLI	GGNNCC	2 cut(s)	73, 258
BspMAI	CTGCAG	2 cut(s)	475, 937
BspPI	GGATC	3 cut(s)	142, 159, 659
BsrDI	GCAATG	3 cut(s)	303, 566, 694
BsrFI	RCCGGY	2 cut(s)	77, 115
BsrI	ACTGG	4 cut(s)	280, 595, 912, 955
BssAI	RCCGGY	2 cut(s)	77, 115
BssECI	CCNNGG	3 cut(s)	87, 609, 796
BssMI	GATC	4 cut(s)	134, 164, 504, 651
Bst2UI	CCWGG	2 cut(s)	88, 611
Bst4CI	ACNGT	3 cut(s)	130, 493, 748
Bst6I	CTCTTC	2 cut(s)	369, 888
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	4 cut(s)	54, 79, 94, 940
BstDEI	CTNAG	5 cut(s)	204, 753, 825, 871, 926
BstF5I	GGATG	3 cut(s)	574, 864, 984
BstKTI	GATC	4 cut(s)	137, 167, 507, 654
BstMBI	GATC	4 cut(s)	134, 164, 504, 651
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 112, 209, 479, 719
BstNI	CCWGG	2 cut(s)	88, 611
BstSCI	CCNGG	3 cut(s)	86, 609, 796
BstSFI	CTRYAG	3 cut(s)	471, 706, 933
BstV1I	GCAGC	4 cut(s)	626, 629, 700, 947
BstX2I	RGATCY	1 cut(s)	164
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	164
Bsu36I	CCTNAGG	1 cut(s)	871
BsuRI	GGCC	7 cut(s)	5, 141, 153, 212, 371, 735, 923
BtgZI	GCGATG	2 cut(s)	96, 473
BtsCI	GGATG	3 cut(s)	574, 864, 984
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	4 cut(s)	54, 79, 94, 940
Cfr10I	RCCGGY	2 cut(s)	77, 115
Cfr13I	GGNCC	3 cut(s)	4, 139, 922
Csp6I	GTAC	5 cut(s)	126, 160, 231, 606, 959
CviAII	CATG	1 cut(s)	946
CviQI	GTAC	5 cut(s)	126, 160, 231, 606, 959
DdeI	CTNAG	5 cut(s)	204, 753, 825, 871, 926
DpnI	GATC	4 cut(s)	136, 166, 506, 653
DpnII	GATC	4 cut(s)	134, 164, 504, 651
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	369, 888
EarI	CTCTTC	2 cut(s)	369, 888
Ecl136II	GAGCTC	1 cut(s)	174
Eco24I	GRGCYC	2 cut(s)	176, 205
Eco53kI	GAGCTC	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	140, 912
Eco81I	CCTNAGG	1 cut(s)	871
EcoICRI	GAGCTC	1 cut(s)	174
EcoRI	GAATTC	1 cut(s)	914
EcoRII	CCWGG	2 cut(s)	86, 609
EcoT38I	GRGCYC	2 cut(s)	176, 205
FaeI	CATG	1 cut(s)	949
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	1 cut(s)	945
FauI	CCCGC	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	504
Fnu4HI	GCNGC	5 cut(s)	75, 615, 618, 714, 936
FokI	GGATG	2 cut(s)	581, 851
FriOI	GRGCYC	2 cut(s)	176, 205
Fsp4HI	GCNGC	5 cut(s)	75, 615, 618, 714, 936
FspBI	CTAG	4 cut(s)	285, 354, 525, 830
GluI	GCNGC	5 cut(s)	75, 615, 618, 714, 936
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	7 cut(s)	5, 141, 153, 212, 371, 735, 923
HapII	CCGG	5 cut(s)	57, 78, 116, 142, 798
Hin1II	CATG	1 cut(s)	949
HincII	GTYRAC	1 cut(s)	887
HindII	GTYRAC	1 cut(s)	887
HinfI	GANTC	1 cut(s)	60
HpaII	CCGG	5 cut(s)	57, 78, 116, 142, 798
HphI	GGTGA	2 cut(s)	283, 955
Hpy166II	GTNNAC	2 cut(s)	407, 887
Hpy188I	TCNGA	2 cut(s)	71, 814
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	2 cut(s)	407, 887
HpyAV	CCTTC	4 cut(s)	164, 187, 637, 642
HpyCH4III	ACNGT	3 cut(s)	130, 493, 748
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	6 cut(s)	333, 473, 515, 716, 809, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 112, 209, 479, 719
HpyF3I	CTNAG	5 cut(s)	204, 753, 825, 871, 926
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	949
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	4 cut(s)	134, 164, 504, 651
LmnI	GCTCC	6 cut(s)	71, 144, 179, 236, 262, 278
Lsp1109I	GCAGC	4 cut(s)	626, 629, 700, 947
LweI	GCATC	5 cut(s)	73, 450, 469, 674, 818
MaeI	CTAG	4 cut(s)	285, 354, 525, 830
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	4 cut(s)	136, 166, 506, 653
MboI	GATC	4 cut(s)	134, 164, 504, 651
MboII	GAAGA	7 cut(s)	386, 646, 649, 652, 859, 888, 905
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	2 cut(s)	176, 205
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	8 cut(s)	16, 65, 346, 519, 624, 729, 852, 914
MluNI	TGGCCA	1 cut(s)	212
MmeI	TCCRAC	2 cut(s)	112, 673
MnlI	CCTC	9 cut(s)	52, 192, 247, 281, 361, 370, 388, 419, 968
Mox20I	TGGCCA	1 cut(s)	212
MreI	CGCCGGCG	1 cut(s)	77
MroNI	GCCGGC	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	4 cut(s)	15, 345, 554, 783
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	5 cut(s)	57, 78, 116, 142, 798
MspR9I	CCNGG	3 cut(s)	88, 611, 798
MvaI	CCWGG	2 cut(s)	88, 611
MwoI	GCNNNNNNNGC	5 cut(s)	83, 112, 209, 479, 719
NaeI	GCCGGC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	798
NdeII	GATC	4 cut(s)	134, 164, 504, 651
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	949
NlaIV	GGNNCC	2 cut(s)	73, 258
NmuCI	GTSAC	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PdiI	GCCGGC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	60
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	5 cut(s)	76, 616, 619, 715, 937
Psp124BI	GAGCTC	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	86, 609
PspGI	CCWGG	2 cut(s)	86, 609
PspN4I	GGNNCC	2 cut(s)	73, 258
PspPI	GGNCC	3 cut(s)	4, 139, 922
PstI	CTGCAG	2 cut(s)	475, 937
PsuI	RGATCY	1 cut(s)	164
RsaI	GTAC	5 cut(s)	127, 161, 232, 607, 960
RsaNI	GTAC	5 cut(s)	126, 160, 231, 606, 959
SacI	GAGCTC	1 cut(s)	176
SaqAI	TTAA	4 cut(s)	15, 345, 554, 783
SatI	GCNGC	5 cut(s)	75, 615, 618, 714, 936
Sau3AI	GATC	4 cut(s)	134, 164, 504, 651
Sau96I	GGNCC	3 cut(s)	4, 139, 922
ScrFI	CCNGG	3 cut(s)	88, 611, 798
SduI	GDGCHC	2 cut(s)	176, 205
SfaNI	GCATC	5 cut(s)	73, 450, 469, 674, 818
SfcI	CTRYAG	3 cut(s)	471, 706, 933
SgrAI	CRCCGGYG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
Sse9I	AATT	8 cut(s)	16, 65, 346, 519, 624, 729, 852, 914
SsiI	CCGC	3 cut(s)	54, 75, 189
SspMI	CTAG	4 cut(s)	285, 354, 525, 830
SstI	GAGCTC	1 cut(s)	176
StyD4I	CCNGG	3 cut(s)	86, 609, 796
TaaI	ACNGT	3 cut(s)	130, 493, 748
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	122, 764
TasI	AATT	8 cut(s)	16, 65, 346, 519, 624, 729, 852, 914
TatI	WGTACW	2 cut(s)	159, 230
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	4 cut(s)	15, 345, 554, 783
Tru9I	TTAA	4 cut(s)	15, 345, 554, 783
TscAI	CASTG	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	4 cut(s)	614, 617, 713, 935
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	563, 647
TspRI	CASTG	1 cut(s)	113
Van91I	CCANNNNNTGG	1 cut(s)	250
XapI	RAATTY	3 cut(s)	65, 852, 914
XbaI	TCTAGA	1 cut(s)	284
XspI	CTAG	4 cut(s)	285, 354, 525, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.