Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003182

Physical Location & Seq

Genomic Coordinates Forward (+)

54102728 .. 54106273

Gene Structure 3546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTTCCATTGCTGCATCCAACGTCGTCGCTTTGAAGCCCGCCGGAATCAAATTCGGAGCCGCCGGCGATGCCAGGGCTTTCCATTTGAAGCAGTGGTCGCCGGTTTCCAGTACGGTTGGATCGGGCCGGAGCATTGGCCTTCAGTACAGATCCAAGAGCTCCTTCACTTCCTCCGGTGGTGTGAGGGCTCAGGTGGCCACACTTGAACAATCAAGTACAGGAGCAGTCCAAAATGTGGAGGCTCCTGTTGTGGTGGTGACTGGAGCTTCTAGAGGCATTGGCAAAGCCATTGCTCTGGCTTTGGGCAAAGCTGGTTGCAAGGTTCTTGTTAATTATGCTAGGTCGTCAAAGGAGGCTGAAGAGGTTGCCAAAGAGATTGAGGCAGTTGGTGGACAAGCTCTTACTTTTGGAGGAGATGTTTCAAAAGAAGCAGATGTTGAAGCGATGCTCAAAACTGCAGTTGATGCTTGGGGAACTGTTGATGTACTGATCAACAATGCAGGAATTACTAGAGACGGTCTGTTGATGAGAATGAAGTTAAAGCAATGGCAGGATGTCATTGACCTAAATCTTACTGGTGTATATTTATGTACCCAGGCAGCAGCCAAAATTATGATGAAGAAGAAGAAGGGAAGGATCATCAATATAGCATCGGTTGTTGGTTTAGTTGGCAATGTTGGACAAGCCAACTATAGTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAGACTGTTGCTAAGGAGTATTCGAGCAGAAACATCAATGTTAATGCTGTTGCCCCCGGCTTTATTGCATCGGATATGACTGCTGAGCTAGGGGCTGACCTTGAGAAGAAAATTTTACAGACCATCCCCTTAGGAAGATATGGTCAACCTGAAGAGATTGCTGGACTGGTGGAATTCTTGGCTCTTAGTCCTGCAGCCAGCTACATGACTGGACAGGTACTCACCATTGATGGAGGGATGGTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

325

Amino Acids

33.64

Weight (kDa)

9.36

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	84 - 276	3e-66	short chain dehydrogenase
KR	PF08659	85 - 240	8.1e-20	KR domain
adh_short_C2	PF13561	89 - 323	9.5e-65	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24360
fragaria_vesca	FvH4_4g24340 FvH4_5g07680 FvH4_5g07680
malus_domestica	MD13G1112000.v1.1 MD14G1162300.v1.1 MD16G1111600.v1.1
prunus_persica	Prupe.1G233400_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1
pyrus_communis	pycom13g09740 pycom14g13520 pycom16g09460
rosa_chinensis	RchiOBHm_Chr4g0431201 RchiOBHm_Chr7g0190791
rosa_laevigata	RLG00000004498 RLG00000006920
rosa_multiflora	Rmu_sc0005258.1_g000006 Rmu_sc0032787.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264310 Rroxscaffold_5G00372740
rosa_rugosa	Rorug04G0249100 Rorug06G0506900
rosa_samantha	Rh4AG305200 Rh4BG312500 Rh4CG328800 Rh4DG309100 Rh7AG113600 Rh7BG116100 Rh7CG118700 Rh7CG119000 Rh7DG117600
rosa_wichuraiana	Rw4G026520 Rw7G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	238
AciI	CCGC	2 cut(s)	42, 63
AclWI	GGATC	3 cut(s)	130, 147, 647
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	3 cut(s)	53, 840, 902
AcuI	CTGAAG	3 cut(s)	128, 381, 900
AfaI	GTAC	6 cut(s)	115, 149, 220, 489, 595, 948
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	5 cut(s)	37, 91, 209, 426, 443
AjnI	CCWGG	2 cut(s)	74, 597
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	6 cut(s)	162, 269, 314, 401, 817, 930
AluI	AGCT	6 cut(s)	162, 269, 314, 401, 817, 930
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	3 cut(s)	130, 147, 647
AoxI	GGCC	4 cut(s)	127, 139, 198, 721
ApeKI	GCWGC	5 cut(s)	14, 602, 605, 701, 923
ApoI	RAATTY	3 cut(s)	53, 840, 902
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	786
AsuHPI	GGTGA	2 cut(s)	271, 943
AxyI	CCTNAGG	1 cut(s)	859
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	2 cut(s)	164, 193
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	4 cut(s)	614, 617, 688, 935
BccI	CCATC	3 cut(s)	860, 953, 961
BciT130I	CCWGG	2 cut(s)	76, 599
BclI	TGATCA	1 cut(s)	492
BcnI	CCSGG	1 cut(s)	786
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	4 cut(s)	273, 342, 513, 818
BfmI	CTRYAG	3 cut(s)	459, 694, 921
BisI	GCNGC	6 cut(s)	15, 63, 603, 606, 702, 924
BlpI	GCTNAGC	1 cut(s)	813
BlsI	GCNGC	6 cut(s)	16, 64, 604, 607, 703, 925
Bme1390I	CCNGG	3 cut(s)	76, 599, 786
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	2 cut(s)	61, 246
BmrFI	CCNGG	3 cut(s)	76, 599, 786
BmsI	GCATC	6 cut(s)	26, 61, 438, 457, 662, 806
BpmI	CTGGAG	1 cut(s)	285
Bpu10I	CCTNAGC	2 cut(s)	192, 741
Bpu1102I	GCTNAGC	1 cut(s)	813
BpuEI	CTTGAG	1 cut(s)	851
BpuMI	CCSGG	1 cut(s)	786
BsaJI	CCNNGG	3 cut(s)	75, 597, 784
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	3 cut(s)	405, 435, 954
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse118I	RCCGGY	2 cut(s)	65, 103
Bse1I	ACTGG	5 cut(s)	111, 268, 583, 900, 943
Bse21I	CCTNAGG	1 cut(s)	859
Bse3DI	GCAATG	4 cut(s)	9, 291, 554, 682
BseBI	CCWGG	2 cut(s)	76, 599
BseDI	CCNNGG	3 cut(s)	75, 597, 784
BseGI	GGATG	4 cut(s)	17, 562, 852, 972
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	4 cut(s)	9, 291, 554, 682
BseMII	CTCAG	2 cut(s)	206, 804
BseNI	ACTGG	5 cut(s)	111, 268, 583, 900, 943
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	4 cut(s)	614, 617, 688, 935
BshFI	GGCC	4 cut(s)	129, 141, 200, 723
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	6 cut(s)	45, 66, 104, 130, 177, 786
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	510
BsmBI	CGTCTC	1 cut(s)	510
BsnI	GGCC	4 cut(s)	129, 141, 200, 723
Bsp1286I	GDGCHC	2 cut(s)	164, 193
Bsp143I	GATC	4 cut(s)	122, 152, 492, 639
Bsp1720I	GCTNAGC	1 cut(s)	813
BspACI	CCGC	2 cut(s)	42, 63
BspANI	GGCC	4 cut(s)	129, 141, 200, 723
BspCNI	CTCAG	2 cut(s)	205, 805
BspLI	GGNNCC	2 cut(s)	61, 246
BspMAI	CTGCAG	2 cut(s)	463, 925
BspPI	GGATC	3 cut(s)	130, 147, 647
BsrDI	GCAATG	4 cut(s)	9, 291, 554, 682
BsrFI	RCCGGY	2 cut(s)	65, 103
BsrI	ACTGG	5 cut(s)	111, 268, 583, 900, 943
BssAI	RCCGGY	2 cut(s)	65, 103
BssECI	CCNNGG	3 cut(s)	75, 597, 784
BssMI	GATC	4 cut(s)	122, 152, 492, 639
Bst2UI	CCWGG	2 cut(s)	76, 599
Bst4CI	ACNGT	4 cut(s)	118, 481, 521, 736
Bst6I	CTCTTC	2 cut(s)	357, 876
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	42, 67, 928
BstDEI	CTNAG	5 cut(s)	192, 741, 813, 859, 914
BstF5I	GGATG	4 cut(s)	17, 562, 852, 972
BstKTI	GATC	4 cut(s)	125, 155, 495, 642
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	4 cut(s)	122, 152, 492, 639
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 71, 100, 197, 467, 707
BstNI	CCWGG	2 cut(s)	76, 599
BstSCI	CCNGG	3 cut(s)	74, 597, 784
BstSFI	CTRYAG	3 cut(s)	459, 694, 921
BstV1I	GCAGC	4 cut(s)	614, 617, 688, 935
BstX2I	RGATCY	1 cut(s)	152
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	152
Bsu36I	CCTNAGG	1 cut(s)	859
BsuRI	GGCC	4 cut(s)	129, 141, 200, 723
BtgZI	GCGATG	2 cut(s)	84, 461
BtsCI	GGATG	4 cut(s)	17, 562, 852, 972
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	3 cut(s)	42, 67, 928
Cfr10I	RCCGGY	2 cut(s)	65, 103
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	6 cut(s)	114, 148, 219, 488, 594, 947
CviAII	CATG	1 cut(s)	934
CviQI	GTAC	6 cut(s)	114, 148, 219, 488, 594, 947
DdeI	CTNAG	5 cut(s)	192, 741, 813, 859, 914
DpnI	GATC	4 cut(s)	124, 154, 494, 641
DpnII	GATC	4 cut(s)	122, 152, 492, 639
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	357, 876
EarI	CTCTTC	2 cut(s)	357, 876
Ecl136II	GAGCTC	1 cut(s)	162
Eco24I	GRGCYC	2 cut(s)	164, 193
Eco53kI	GAGCTC	1 cut(s)	162
Eco57I	CTGAAG	3 cut(s)	128, 381, 900
Eco81I	CCTNAGG	1 cut(s)	859
EcoICRI	GAGCTC	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	902
EcoRII	CCWGG	2 cut(s)	74, 597
EcoT38I	GRGCYC	2 cut(s)	164, 193
Esp3I	CGTCTC	1 cut(s)	510
FaeI	CATG	1 cut(s)	937
FaiI	YATR	9 cut(s)	339, 586, 592, 617, 650, 696, 806, 870, 935
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	1 cut(s)	933
FauI	CCCGC	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	492
Fnu4HI	GCNGC	6 cut(s)	15, 63, 603, 606, 702, 924
FokI	GGATG	3 cut(s)	4, 569, 839
FriOI	GRGCYC	2 cut(s)	164, 193
Fsp4HI	GCNGC	6 cut(s)	15, 63, 603, 606, 702, 924
FspBI	CTAG	4 cut(s)	273, 342, 513, 818
GluI	GCNGC	6 cut(s)	15, 63, 603, 606, 702, 924
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	4 cut(s)	129, 141, 200, 723
HapII	CCGG	6 cut(s)	45, 66, 104, 130, 177, 786
Hin1II	CATG	1 cut(s)	937
HincII	GTYRAC	1 cut(s)	875
HindII	GTYRAC	1 cut(s)	875
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	6 cut(s)	45, 66, 104, 130, 177, 786
HphI	GGTGA	2 cut(s)	271, 943
Hpy166II	GTNNAC	2 cut(s)	395, 875
Hpy188I	TCNGA	2 cut(s)	59, 802
Hpy188III	TCNNGA	1 cut(s)	273
Hpy8I	GTNNAC	2 cut(s)	395, 875
Hpy99I	CGWCG	2 cut(s)	29, 32
HpyAV	CCTTC	4 cut(s)	152, 175, 625, 630
HpyCH4III	ACNGT	4 cut(s)	118, 481, 521, 736
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	7 cut(s)	17, 321, 461, 503, 704, 797, 923
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 71, 100, 197, 467, 707
HpyF3I	CTNAG	5 cut(s)	192, 741, 813, 859, 914
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	937
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	4 cut(s)	122, 152, 492, 639
LmnI	GCTCC	6 cut(s)	59, 132, 167, 224, 250, 266
Lsp1109I	GCAGC	4 cut(s)	614, 617, 688, 935
LweI	GCATC	6 cut(s)	26, 61, 438, 457, 662, 806
MaeI	CTAG	4 cut(s)	273, 342, 513, 818
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	4 cut(s)	124, 154, 494, 641
MboI	GATC	4 cut(s)	122, 152, 492, 639
MboII	GAAGA	7 cut(s)	374, 634, 637, 640, 847, 876, 893
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	2 cut(s)	164, 193
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	7 cut(s)	53, 334, 507, 612, 717, 840, 902
MluNI	TGGCCA	1 cut(s)	200
MmeI	TCCRAC	3 cut(s)	45, 100, 661
MnlI	CCTC	9 cut(s)	180, 184, 235, 269, 349, 358, 376, 407, 956
Mox20I	TGGCCA	1 cut(s)	200
MreI	CGCCGGCG	1 cut(s)	65
MroNI	GCCGGC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	3 cut(s)	333, 542, 771
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	6 cut(s)	45, 66, 104, 130, 177, 786
MspR9I	CCNGG	3 cut(s)	76, 599, 786
MvaI	CCWGG	2 cut(s)	76, 599
MwoI	GCNNNNNNNGC	6 cut(s)	11, 71, 100, 197, 467, 707
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	786
NdeII	GATC	4 cut(s)	122, 152, 492, 639
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	937
NlaIV	GGNNCC	2 cut(s)	61, 246
NmuCI	GTSAC	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	6 cut(s)	16, 64, 604, 607, 703, 925
Psp124BI	GAGCTC	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	74, 597
PspGI	CCWGG	2 cut(s)	74, 597
PspN4I	GGNNCC	2 cut(s)	61, 246
PspPI	GGNCC	1 cut(s)	127
PstI	CTGCAG	2 cut(s)	463, 925
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	6 cut(s)	115, 149, 220, 489, 595, 948
RsaNI	GTAC	6 cut(s)	114, 148, 219, 488, 594, 947
SacI	GAGCTC	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	333, 542, 771
SatI	GCNGC	6 cut(s)	15, 63, 603, 606, 702, 924
Sau3AI	GATC	4 cut(s)	122, 152, 492, 639
Sau96I	GGNCC	1 cut(s)	127
ScrFI	CCNGG	3 cut(s)	76, 599, 786
SduI	GDGCHC	2 cut(s)	164, 193
SfaNI	GCATC	6 cut(s)	26, 61, 438, 457, 662, 806
SfcI	CTRYAG	3 cut(s)	459, 694, 921
SgrAI	CRCCGGYG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
Sse9I	AATT	7 cut(s)	53, 334, 507, 612, 717, 840, 902
SsiI	CCGC	2 cut(s)	42, 63
SspMI	CTAG	4 cut(s)	273, 342, 513, 818
SstI	GAGCTC	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	74, 597, 784
TaaI	ACNGT	4 cut(s)	118, 481, 521, 736
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	752
TasI	AATT	7 cut(s)	53, 334, 507, 612, 717, 840, 902
TatI	WGTACW	3 cut(s)	147, 218, 487
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	3 cut(s)	333, 542, 771
Tru9I	TTAA	3 cut(s)	333, 542, 771
TscAI	CASTG	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	5 cut(s)	14, 602, 605, 701, 923
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	551, 635
TspRI	CASTG	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	238
XapI	RAATTY	3 cut(s)	53, 840, 902
XbaI	TCTAGA	1 cut(s)	272
XspI	CTAG	4 cut(s)	273, 342, 513, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.