Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003182

Physical Location & Seq

Genomic Coordinates Forward (+)

24793418 .. 24796736

Gene Structure 3319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G233400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTTCCATCGCCGCATCAAACGTCGTCGCTTTTAAATCCGCCGATAAATTCGGAGCTCCTGGCAATGCCAGAGCCTGCCATTTCAGGCAATGGGCCCCAGTTGGTAGCACAATCGGATCGGGTCGGAGAATTGGCCTCAAGTACAGATCCAAGAGCAGCTCCGGTCACGTGAGGGCTCAGGTGGCCACGCTTGAACAAGCAAGCGCAGGAGCAGCACCAAAAGTGGAGGGTCCTGTGGTGGTAGTGACCGGAGCTTCTAGGGGCATTGGCAAAGCCATTGCTCTGTCTTTGGGAAAAGCTGGTTGCAAGGTCCTTGTTAATTACGCAAGGTCGTCAAAGGAGGCAGAGGAGGTTTCCAAAGAGATTGAGGCATTCGGTGGACAAGCTCTTACTTTTGGAGGAGATGTTTCAAAGGAAGAAGATGTTGAAGCCATGCTCAAAACTGCGGTTGATGCTTGGGGAACTGTTGATGTATTGATAAATAATGCAGGAATTACTAGGGATGGTCTATTGATGAGAATGAAGAAACAACAATGGCAGGAGGTCATCGATCTAAATCTTACTGGTGTATTTCTATGTACCCAGGCAGCAGCTAAAATTATGATGAAGAAGAAGAAGGGAAGGATAATCAATATAGCATCGGTTGTTGGCCTAGTTGGAAATGTTGGACAAGCCAACTATAGTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAGAGTGTTGCTAAGGAGTATTCTAGCAGACACATCAATGTTAATGCTGTTGCCCCGGGATTTATTGCATCGGACATGACTGCCAAGCTAGGGGATGACATTGAGAAGAAAATTTTAGAGACCATCCCCTTAGGAAGATATGGCCAACCTGAAGAAGTTGCTGGACTGGTGGAATTCTTGGCCCTTAGTCCTGCAGCCAGTTACATGACTGGACAGGTGCTCACCATTGATGGAGGTATGGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

322

Amino Acids

33.51

Weight (kDa)

9.45

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24360
fragaria_vesca	FvH4_4g24340 FvH4_5g07680 FvH4_5g07680
malus_domestica	MD13G1112000.v1.1 MD14G1162300.v1.1 MD16G1111600.v1.1
prunus_persica	Prupe.1G233400_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1
pyrus_communis	pycom13g09740 pycom14g13520 pycom16g09460
rosa_chinensis	RchiOBHm_Chr4g0431201 RchiOBHm_Chr7g0190791
rosa_laevigata	RLG00000004498 RLG00000006920
rosa_multiflora	Rmu_sc0005258.1_g000006 Rmu_sc0032787.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264310 Rroxscaffold_5G00372740
rosa_rugosa	Rorug04G0249100 Rorug06G0506900
rosa_samantha	Rh4AG305200 Rh4BG312500 Rh4CG328800 Rh4DG309100 Rh7AG113600 Rh7BG116100 Rh7CG118700 Rh7CG119000 Rh7DG117600
rosa_wichuraiana	Rw4G026520 Rw7G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	15, 42, 449
AclWI	GGATC	2 cut(s)	127, 144
AcoI	YGGCCR	2 cut(s)	186, 859
AcsI	RAATTY	3 cut(s)	50, 828, 890
AcuI	CTGAAG	1 cut(s)	888
AcvI	CACGTG	1 cut(s)	172
AfaI	GTAC	2 cut(s)	146, 583
AfiI	CCNNNNNNNGG	1 cut(s)	807
AgsI	TTSAA	3 cut(s)	197, 414, 431
AjnI	CCWGG	2 cut(s)	61, 585
AluBI	AGCT	7 cut(s)	59, 162, 257, 302, 389, 596, 805
AluI	AGCT	7 cut(s)	59, 162, 257, 302, 389, 596, 805
Alw21I	GWGCWC	2 cut(s)	61, 939
Alw26I	GTCTC	1 cut(s)	830
AlwI	GGATC	2 cut(s)	127, 144
AlwNI	CAGNNNCTG	1 cut(s)	78
Ama87I	CYCGRG	1 cut(s)	772
AoxI	GGCC	7 cut(s)	96, 136, 186, 652, 709, 859, 897
ApaI	GGGCCC	1 cut(s)	100
ApeKI	GCWGC	6 cut(s)	159, 215, 590, 593, 689, 911
ApoI	RAATTY	3 cut(s)	50, 828, 890
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	5 cut(s)	96, 97, 233, 313, 898
AsuC2I	CCSGG	2 cut(s)	773, 774
AsuHPI	GGTGA	1 cut(s)	931
AvaI	CYCGRG	1 cut(s)	772
AvaII	GGWCC	2 cut(s)	233, 313
AxyI	CCTNAGG	1 cut(s)	847
BaeGI	GKGCMC	1 cut(s)	100
BalI	TGGCCA	2 cut(s)	188, 861
BanII	GRGCYC	3 cut(s)	61, 100, 181
BbrPI	CACGTG	1 cut(s)	172
Bbv12I	GWGCWC	2 cut(s)	61, 939
BbvI	GCAGC	6 cut(s)	171, 227, 602, 605, 676, 923
BccI	CCATC	4 cut(s)	17, 500, 848, 941
BciT130I	CCWGG	2 cut(s)	63, 587
BcnI	CCSGG	2 cut(s)	773, 774
BcoDI	GTCTC	1 cut(s)	830
BfaI	CTAG	5 cut(s)	261, 501, 656, 741, 806
BfmI	CTRYAG	2 cut(s)	682, 909
BisI	GCNGC	7 cut(s)	15, 160, 216, 591, 594, 690, 912
BlsI	GCNGC	7 cut(s)	16, 161, 217, 592, 595, 691, 913
Bme1390I	CCNGG	4 cut(s)	63, 587, 773, 774
Bme18I	GGWCC	2 cut(s)	233, 313
BmeT110I	CYCGRG	1 cut(s)	772
BmgT120I	GGNCC	5 cut(s)	96, 97, 233, 313, 898
BmiI	GGNNCC	3 cut(s)	98, 99, 234
BmrFI	CCNGG	4 cut(s)	63, 587, 773, 774
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	4 cut(s)	26, 445, 650, 794
BmuI	ACTGGG	1 cut(s)	95
Bpu10I	CCTNAGC	2 cut(s)	180, 729
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	2 cut(s)	773, 774
Bsa29I	ATCGAT	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	830
BsaJI	CCNNGG	3 cut(s)	585, 771, 772
BsaWI	WCCGGW	2 cut(s)	164, 251
BsaXI	ACNNNNNCTCC	3 cut(s)	393, 423, 942
Bsc4I	CCNNNNNNNGG	1 cut(s)	807
Bse1I	ACTGG	5 cut(s)	101, 571, 888, 915, 931
Bse21I	CCTNAGG	1 cut(s)	847
Bse3DI	GCAATG	3 cut(s)	73, 98, 279
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	63, 587
BseCI	ATCGAT	1 cut(s)	552
BseDI	CCNNGG	3 cut(s)	585, 771, 772
BseGI	GGATG	3 cut(s)	511, 817, 840
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	1 cut(s)	807
BseMI	GCAATG	3 cut(s)	73, 98, 279
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	5 cut(s)	101, 571, 888, 915, 931
BseRI	GAGGAG	2 cut(s)	365, 417
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	6 cut(s)	171, 227, 602, 605, 676, 923
BshFI	GGCC	7 cut(s)	98, 138, 188, 654, 711, 861, 899
BshVI	ATCGAT	1 cut(s)	552
BsiHKAI	GWGCWC	2 cut(s)	61, 939
BsiHKCI	CYCGRG	1 cut(s)	772
BsiSI	CCGG	3 cut(s)	165, 252, 773
BslI	CCNNNNNNNGG	1 cut(s)	807
BsmAI	GTCTC	1 cut(s)	830
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	7 cut(s)	98, 138, 188, 654, 711, 861, 899
Bso31I	GGTCTC	1 cut(s)	830
BsoBI	CYCGRG	1 cut(s)	772
Bsp120I	GGGCCC	1 cut(s)	96
Bsp1286I	GDGCHC	4 cut(s)	61, 100, 181, 939
Bsp143I	GATC	3 cut(s)	119, 149, 553
BspACI	CCGC	3 cut(s)	15, 42, 449
BspANI	GGCC	7 cut(s)	98, 138, 188, 654, 711, 861, 899
BspCNI	CTCAG	1 cut(s)	193
BspDI	ATCGAT	1 cut(s)	552
BspLI	GGNNCC	3 cut(s)	98, 99, 234
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	2 cut(s)	127, 144
BspTNI	GGTCTC	1 cut(s)	830
BsrDI	GCAATG	3 cut(s)	73, 98, 279
BsrI	ACTGG	5 cut(s)	101, 571, 888, 915, 931
BssECI	CCNNGG	3 cut(s)	585, 771, 772
BssMI	GATC	3 cut(s)	119, 149, 553
Bst2UI	CCWGG	2 cut(s)	63, 587
Bst4CI	ACNGT	1 cut(s)	469
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	79, 205
BstDEI	CTNAG	4 cut(s)	180, 729, 847, 902
BstF5I	GGATG	3 cut(s)	511, 817, 840
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	3 cut(s)	122, 152, 556
BstMAI	GTCTC	1 cut(s)	830
BstMBI	GATC	3 cut(s)	119, 149, 553
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 185, 215, 455, 695
BstNI	CCWGG	2 cut(s)	63, 587
BstSCI	CCNGG	4 cut(s)	61, 585, 771, 772
BstSFI	CTRYAG	2 cut(s)	682, 909
BstSLI	GKGCMC	1 cut(s)	100
BstV1I	GCAGC	6 cut(s)	171, 227, 602, 605, 676, 923
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
Bsu15I	ATCGAT	1 cut(s)	552
Bsu36I	CCTNAGG	1 cut(s)	847
BsuRI	GGCC	7 cut(s)	98, 138, 188, 654, 711, 861, 899
BsuTUI	ATCGAT	1 cut(s)	552
BtsCI	GGATG	3 cut(s)	511, 817, 840
Cac8I	GCNNGC	2 cut(s)	79, 205
CaiI	CAGNNNCTG	1 cut(s)	78
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	5 cut(s)	96, 97, 233, 313, 898
Cfr9I	CCCGGG	1 cut(s)	772
ClaI	ATCGAT	1 cut(s)	552
Csp6I	GTAC	2 cut(s)	145, 582
CviAII	CATG	3 cut(s)	436, 793, 922
CviQI	GTAC	2 cut(s)	145, 582
DdeI	CTNAG	4 cut(s)	180, 729, 847, 902
DpnI	GATC	3 cut(s)	121, 151, 555
DpnII	GATC	3 cut(s)	119, 149, 553
DraI	TTTAAA	1 cut(s)	37
EaeI	YGGCCR	2 cut(s)	186, 859
EciI	GGCGGA	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	59
Eco24I	GRGCYC	3 cut(s)	61, 100, 181
Eco31I	GGTCTC	1 cut(s)	830
Eco47I	GGWCC	2 cut(s)	233, 313
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	888
Eco72I	CACGTG	1 cut(s)	172
Eco81I	CCTNAGG	1 cut(s)	847
Eco88I	CYCGRG	1 cut(s)	772
EcoICRI	GAGCTC	1 cut(s)	59
EcoO109I	RGGNCCY	3 cut(s)	97, 233, 313
EcoRI	GAATTC	1 cut(s)	890
EcoRII	CCWGG	2 cut(s)	61, 585
EcoT38I	GRGCYC	3 cut(s)	61, 100, 181
FaeI	CATG	3 cut(s)	439, 796, 925
FaiI	YATR	9 cut(s)	437, 580, 605, 638, 684, 794, 858, 923, 956
FatI	CATG	3 cut(s)	435, 792, 921
Fnu4HI	GCNGC	7 cut(s)	15, 160, 216, 591, 594, 690, 912
FokI	GGATG	3 cut(s)	518, 824, 827
FriOI	GRGCYC	3 cut(s)	61, 100, 181
Fsp4HI	GCNGC	7 cut(s)	15, 160, 216, 591, 594, 690, 912
FspBI	CTAG	5 cut(s)	261, 501, 656, 741, 806
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	7 cut(s)	15, 160, 216, 591, 594, 690, 912
HaeIII	GGCC	7 cut(s)	98, 138, 188, 654, 711, 861, 899
HapII	CCGG	3 cut(s)	165, 252, 773
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	439, 796, 925
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HpaII	CCGG	3 cut(s)	165, 252, 773
HphI	GGTGA	1 cut(s)	931
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	4 cut(s)	56, 119, 129, 790
Hpy8I	GTNNAC	1 cut(s)	383
Hpy99I	CGWCG	2 cut(s)	29, 32
HpyAV	CCTTC	2 cut(s)	613, 618
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	2 cut(s)	24, 171
HpyCH4V	TGCA	5 cut(s)	309, 491, 692, 785, 911
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 185, 215, 455, 695
HpyF3I	CTNAG	4 cut(s)	180, 729, 847, 902
HpySE526I	ACGT	2 cut(s)	24, 171
Hsp92II	CATG	3 cut(s)	439, 796, 925
HspAI	GCGC	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	119, 149, 553
LmnI	GCTCC	5 cut(s)	56, 64, 167, 212, 254
Lsp1109I	GCAGC	6 cut(s)	171, 227, 602, 605, 676, 923
LweI	GCATC	4 cut(s)	26, 445, 650, 794
MaeI	CTAG	5 cut(s)	261, 501, 656, 741, 806
MaeII	ACGT	2 cut(s)	24, 171
MaeIII	GTNAC	3 cut(s)	167, 247, 917
MalI	GATC	3 cut(s)	121, 151, 555
MboI	GATC	3 cut(s)	119, 149, 553
MboII	GAAGA	9 cut(s)	431, 434, 538, 622, 625, 628, 835, 864, 881
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	4 cut(s)	61, 100, 181, 939
MlsI	TGGCCA	2 cut(s)	188, 861
MluCI	AATT	8 cut(s)	50, 132, 322, 495, 600, 705, 828, 890
MluNI	TGGCCA	2 cut(s)	188, 861
MmeI	TCCRAC	3 cut(s)	107, 640, 649
Mox20I	TGGCCA	2 cut(s)	188, 861
MscI	TGGCCA	2 cut(s)	188, 861
MseI	TTAA	3 cut(s)	36, 321, 759
MslI	CAYNNNNRTG	1 cut(s)	753
Msp20I	TGGCCA	2 cut(s)	188, 861
MspI	CCGG	3 cut(s)	165, 252, 773
MspR9I	CCNGG	4 cut(s)	63, 587, 773, 774
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	2 cut(s)	63, 587
MwoI	GCNNNNNNNGC	5 cut(s)	11, 185, 215, 455, 695
NciI	CCSGG	2 cut(s)	773, 774
NdeII	GATC	3 cut(s)	119, 149, 553
NlaIII	CATG	3 cut(s)	439, 796, 925
NlaIV	GGNNCC	3 cut(s)	98, 99, 234
NmuCI	GTSAC	2 cut(s)	167, 247
PctI	GAATGC	1 cut(s)	374
PkrI	GCNGC	7 cut(s)	16, 161, 217, 592, 595, 691, 913
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	172
PpuMI	RGGWCCY	2 cut(s)	233, 313
Psp124BI	GAGCTC	1 cut(s)	61
Psp5II	RGGWCCY	2 cut(s)	233, 313
Psp6I	CCWGG	2 cut(s)	61, 585
PspCI	CACGTG	1 cut(s)	172
PspGI	CCWGG	2 cut(s)	61, 585
PspN4I	GGNNCC	3 cut(s)	98, 99, 234
PspOMI	GGGCCC	1 cut(s)	96
PspPI	GGNCC	5 cut(s)	96, 97, 233, 313, 898
PspPPI	RGGWCCY	2 cut(s)	233, 313
PstI	CTGCAG	1 cut(s)	913
PstNI	CAGNNNCTG	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	2 cut(s)	146, 583
RsaNI	GTAC	2 cut(s)	145, 582
RseI	CAYNNNNRTG	1 cut(s)	753
SacI	GAGCTC	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	36, 321, 759
SatI	GCNGC	7 cut(s)	15, 160, 216, 591, 594, 690, 912
Sau3AI	GATC	3 cut(s)	119, 149, 553
Sau96I	GGNCC	5 cut(s)	96, 97, 233, 313, 898
ScrFI	CCNGG	4 cut(s)	63, 587, 773, 774
SduI	GDGCHC	4 cut(s)	61, 100, 181, 939
SfaNI	GCATC	4 cut(s)	26, 445, 650, 794
SfcI	CTRYAG	2 cut(s)	682, 909
SinI	GGWCC	2 cut(s)	233, 313
SmaI	CCCGGG	1 cut(s)	774
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	8 cut(s)	50, 132, 322, 495, 600, 705, 828, 890
SsiI	CCGC	3 cut(s)	15, 42, 449
SspMI	CTAG	5 cut(s)	261, 501, 656, 741, 806
SstI	GAGCTC	1 cut(s)	61
StyD4I	CCNGG	4 cut(s)	61, 585, 771, 772
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	2 cut(s)	27, 174
TaqI	TCGA	1 cut(s)	552
TasI	AATT	8 cut(s)	50, 132, 322, 495, 600, 705, 828, 890
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	36, 321, 759
Tru9I	TTAA	3 cut(s)	36, 321, 759
TseFI	GTSAC	2 cut(s)	167, 247
TseI	GCWGC	6 cut(s)	159, 215, 590, 593, 689, 911
Tsp45I	GTSAC	2 cut(s)	167, 247
TspDTI	ATGAA	2 cut(s)	539, 623
TspMI	CCCGGG	1 cut(s)	772
VpaK11BI	GGWCC	2 cut(s)	233, 313
XapI	RAATTY	3 cut(s)	50, 828, 890
XmaI	CCCGGG	1 cut(s)	772
XspI	CTAG	5 cut(s)	261, 501, 656, 741, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.