Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003182

Physical Location & Seq

Genomic Coordinates Forward (+)

9103172 .. 9105711

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG119000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCGGCCACGGCCGCCTTTAACGCCGTCGGAGCTCCGGCGCGCCTCTCCGGCCAATTGTCTCACCCGAGCCGCCGTCCCTATCCGCTTCTCGCCGGACTCCGACTCCGTCAGGCCGTCCTGGCGCGATACTCGAGCTCAGTATCTTCGTCCTCTGGCTCAGACGCCAGAGGAATTGGCAAGGCTGTTGCCCTCGCTTTCGGAAAATCTGGTTGTAAGGTGCTTGTAAACTATGCAAGGTCATATAAGGAAGCCGAACAAGTTTCCAAGGAGATTGAGGAATCTGGTGGTCAAGCTCTGACGTTTGGGGGTGATGTTTCAAAGGAAGAAGATGTAGCAGCAATGATTAAAACTGTGGTTGATGCGTGGGGAACAGTTGATGTCTTGGTTAACAATGCAGGAATAACACGGGATGGCTTGTTGATGAGAATGAAAAAATCCCAATGGCAGGAGGTTATTGATTTGAATCTTACTGGTGTATTTTTATGCACACAGGCTGCAGCCAAAGTTATGATGAAACAAAGAAAGGGAAGAATTATCAATATAGCATCTGTTGTTGGTCTTGTTGGCAATGTTGGACAAGCCAACTACAGCGCTGCAAAAGCAGGGGTAATTGGCTTCACAAAGAGTGTTGCAAAGGAATATTCAAGCAGGAACATCAATGTCAATGCTGTAGCTCCTGGATTTATTGCGTCTGATATGACTGCCAAGCTGGGAGAAGACATAGAAAAGAAAATCATTGGGTCCATCCCCTTAGGGCGATATGGTCAACCTGAAGAAGTTGCTGGACTGGTGGAATTCCTGGCTCTTAATCCTGCTGCTGGTTACATTACTGGACAGGTGTTGACCATTGATGGAGGAATGGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

290

Amino Acids

30.39

Weight (kDa)

9.43

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	56 - 288	2e-64	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	56 - 241	4.2e-62	short chain dehydrogenase
KR	PF08659	58 - 222	4.5e-18	KR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24360
fragaria_vesca	FvH4_4g24340 FvH4_5g07680 FvH4_5g07680
malus_domestica	MD13G1112000.v1.1 MD14G1162300.v1.1 MD16G1111600.v1.1
prunus_persica	Prupe.1G233400_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1
pyrus_communis	pycom13g09740 pycom14g13520 pycom16g09460
rosa_chinensis	RchiOBHm_Chr4g0431201 RchiOBHm_Chr7g0190791
rosa_laevigata	RLG00000004498 RLG00000006920
rosa_multiflora	Rmu_sc0005258.1_g000006 Rmu_sc0032787.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264310 Rroxscaffold_5G00372740
rosa_rugosa	Rorug04G0249100 Rorug06G0506900
rosa_samantha	Rh4AG305200 Rh4BG312500 Rh4CG328800 Rh4DG309100 Rh7AG113600 Rh7BG116100 Rh7CG118700 Rh7CG119000 Rh7DG117600
rosa_wichuraiana	Rw4G026520 Rw7G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	43, 127
AciI	CCGC	4 cut(s)	5, 15, 73, 86
AcoI	YGGCCR	3 cut(s)	6, 12, 52
AcsI	RAATTY	1 cut(s)	797
AcuI	CTGAAG	1 cut(s)	795
AcyI	GRCGYC	1 cut(s)	165
AfeI	AGCGCT	1 cut(s)	595
AfiI	CCNNNNNNNGG	2 cut(s)	448, 821
AgsI	TTSAA	3 cut(s)	321, 466, 648
AjnI	CCWGG	3 cut(s)	120, 679, 801
AluBI	AGCT	5 cut(s)	35, 138, 296, 677, 712
AluI	AGCT	5 cut(s)	35, 138, 296, 677, 712
Alw21I	GWGCWC	2 cut(s)	37, 140
Alw26I	GTCTC	1 cut(s)	66
Ama87I	CYCGRG	2 cut(s)	67, 133
Aor51HI	AGCGCT	1 cut(s)	595
AoxI	GGCC	4 cut(s)	6, 12, 52, 114
ApeKI	GCWGC	5 cut(s)	338, 497, 500, 596, 818
ApoI	RAATTY	1 cut(s)	797
AscI	GGCGCGCC	1 cut(s)	41
AspLEI	GCGC	4 cut(s)	43, 45, 127, 596
AspS9I	GGNCC	1 cut(s)	744
AsuHPI	GGTGA	2 cut(s)	56, 323
AvaI	CYCGRG	2 cut(s)	67, 133
AvaII	GGWCC	1 cut(s)	744
AxyI	CCTNAGG	1 cut(s)	754
BanII	GRGCYC	2 cut(s)	37, 140
BbsI	GAAGAC	1 cut(s)	726
Bbv12I	GWGCWC	2 cut(s)	37, 140
BbvI	GCAGC	5 cut(s)	350, 484, 512, 583, 805
BccI	CCATC	3 cut(s)	407, 755, 848
BceAI	ACGGC	4 cut(s)	11, 27, 60, 101
BciT130I	CCWGG	3 cut(s)	122, 681, 803
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	3 cut(s)	498, 589, 672
BfoI	RGCGCY	1 cut(s)	597
BglI	GCCNNNNNGGC	2 cut(s)	51, 122
BisI	GCNGC	8 cut(s)	6, 15, 73, 339, 498, 501, 597, 819
BlsI	GCNGC	8 cut(s)	7, 16, 74, 340, 499, 502, 598, 820
Bme1390I	CCNGG	3 cut(s)	122, 681, 803
Bme18I	GGWCC	1 cut(s)	744
BmeT110I	CYCGRG	2 cut(s)	67, 133
BmgT120I	GGNCC	1 cut(s)	744
BmiI	GGNNCC	1 cut(s)	745
BmrFI	CCNGG	3 cut(s)	122, 681, 803
BmsI	GCATC	2 cut(s)	352, 557
BpiI	GAAGAC	1 cut(s)	726
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	9, 267
BsaXI	ACNNNNNCTCC	3 cut(s)	90, 120, 849
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 821
Bse1I	ACTGG	3 cut(s)	478, 795, 838
Bse21I	CCTNAGG	1 cut(s)	754
Bse3DI	GCAATG	2 cut(s)	348, 577
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	3 cut(s)	122, 681, 803
BseDI	CCNNGG	2 cut(s)	9, 267
BseGI	GGATG	2 cut(s)	418, 747
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	448, 821
BseMI	GCAATG	2 cut(s)	348, 577
BseMII	CTCAG	2 cut(s)	153, 174
BseNI	ACTGG	3 cut(s)	478, 795, 838
BsePI	GCGCGC	1 cut(s)	41
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	5 cut(s)	350, 484, 512, 583, 805
BseYI	CCCAGC	1 cut(s)	712
Bsh1236I	CGCG	2 cut(s)	43, 127
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	4 cut(s)	8, 14, 54, 116
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	37, 140
BsiHKCI	CYCGRG	2 cut(s)	67, 133
BsiSI	CCGG	3 cut(s)	38, 51, 96
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	448, 821
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	4 cut(s)	8, 14, 54, 116
BsoBI	CYCGRG	2 cut(s)	67, 133
Bsp1286I	GDGCHC	2 cut(s)	37, 140
BspACI	CCGC	4 cut(s)	5, 15, 73, 86
BspANI	GGCC	4 cut(s)	8, 14, 54, 116
BspCNI	CTCAG	2 cut(s)	152, 173
BspFNI	CGCG	2 cut(s)	43, 127
BspLI	GGNNCC	1 cut(s)	745
BspMAI	CTGCAG	1 cut(s)	502
BsrDI	GCAATG	2 cut(s)	348, 577
BsrI	ACTGG	3 cut(s)	478, 795, 838
BssECI	CCNNGG	2 cut(s)	9, 267
BssHII	GCGCGC	1 cut(s)	41
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	3 cut(s)	122, 681, 803
Bst4CI	ACNGT	2 cut(s)	355, 376
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	3 cut(s)	139, 160, 754
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	418, 747
BstFNI	CGCG	2 cut(s)	43, 127
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	4 cut(s)	43, 45, 127, 596
BstMAI	GTCTC	1 cut(s)	66
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 14, 23, 32, 51, 122, 602
BstNI	CCWGG	3 cut(s)	122, 681, 803
BstSCI	CCNGG	3 cut(s)	120, 679, 801
BstSFI	CTRYAG	3 cut(s)	498, 589, 672
BstUI	CGCG	2 cut(s)	43, 127
BstV1I	GCAGC	5 cut(s)	350, 484, 512, 583, 805
BstV2I	GAAGAC	1 cut(s)	726
BstZI	CGGCCG	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	754
BsuRI	GGCC	4 cut(s)	8, 14, 54, 116
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	418, 747
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	4 cut(s)	43, 45, 127, 596
Cfr13I	GGNCC	1 cut(s)	744
CseI	GACGC	2 cut(s)	173, 681
DdeI	CTNAG	3 cut(s)	139, 160, 754
EaeI	YGGCCR	3 cut(s)	6, 12, 52
EagI	CGGCCG	1 cut(s)	12
Ecl136II	GAGCTC	2 cut(s)	35, 138
EclXI	CGGCCG	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	2 cut(s)	37, 140
Eco47I	GGWCC	1 cut(s)	744
Eco47III	AGCGCT	1 cut(s)	595
Eco52I	CGGCCG	1 cut(s)	12
Eco53kI	GAGCTC	2 cut(s)	35, 138
Eco57I	CTGAAG	1 cut(s)	795
Eco81I	CCTNAGG	1 cut(s)	754
Eco88I	CYCGRG	2 cut(s)	67, 133
EcoICRI	GAGCTC	2 cut(s)	35, 138
EcoRI	GAATTC	1 cut(s)	797
EcoRII	CCWGG	3 cut(s)	120, 679, 801
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	2 cut(s)	37, 140
ErhI	CCWWGG	1 cut(s)	267
FaiI	YATR	9 cut(s)	234, 244, 246, 487, 512, 545, 701, 725, 765
FaqI	GGGAC	1 cut(s)	63
Fnu4HI	GCNGC	8 cut(s)	6, 15, 73, 339, 498, 501, 597, 819
FokI	GGATG	2 cut(s)	425, 734
FriOI	GRGCYC	2 cut(s)	37, 140
Fsp4HI	GCNGC	8 cut(s)	6, 15, 73, 339, 498, 501, 597, 819
GlaI	GCGC	4 cut(s)	42, 44, 126, 595
GluI	GCNGC	8 cut(s)	6, 15, 73, 339, 498, 501, 597, 819
GsaI	CCCAGC	1 cut(s)	716
HaeII	RGCGCY	1 cut(s)	597
HaeIII	GGCC	4 cut(s)	8, 14, 54, 116
HapII	CCGG	3 cut(s)	38, 51, 96
HgaI	GACGC	2 cut(s)	173, 681
HhaI	GCGC	4 cut(s)	43, 45, 127, 596
Hin1I	GRCGYC	1 cut(s)	165
Hin6I	GCGC	4 cut(s)	41, 43, 125, 594
HinP1I	GCGC	4 cut(s)	41, 43, 125, 594
HincII	GTYRAC	3 cut(s)	391, 770, 846
HindII	GTYRAC	3 cut(s)	391, 770, 846
HinfI	GANTC	4 cut(s)	99, 105, 281, 466
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	3 cut(s)	38, 51, 96
HphI	GGTGA	2 cut(s)	56, 323
Hpy166II	GTNNAC	4 cut(s)	229, 391, 770, 846
Hpy188I	TCNGA	6 cut(s)	32, 104, 163, 203, 300, 697
Hpy8I	GTNNAC	4 cut(s)	229, 391, 770, 846
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	355, 376
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	6 cut(s)	236, 398, 489, 500, 599, 635
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 14, 23, 32, 51, 122, 602
HpyF3I	CTNAG	3 cut(s)	139, 160, 754
HpySE526I	ACGT	1 cut(s)	302
Hsp92I	GRCGYC	1 cut(s)	165
HspAI	GCGC	4 cut(s)	41, 43, 125, 594
KspAI	GTTAAC	1 cut(s)	391
LmnI	GCTCC	3 cut(s)	32, 40, 682
Lsp1109I	GCAGC	5 cut(s)	350, 484, 512, 583, 805
LweI	GCATC	2 cut(s)	352, 557
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	824
MboII	GAAGA	6 cut(s)	138, 338, 341, 543, 731, 788
MfeI	CAATTG	1 cut(s)	56
MhlI	GDGCHC	2 cut(s)	37, 140
MluCI	AATT	5 cut(s)	56, 174, 534, 612, 797
MlyI	GAGTC	2 cut(s)	93, 99
MmeI	TCCRAC	3 cut(s)	10, 127, 556
MnlI	CCTC	7 cut(s)	56, 163, 164, 203, 271, 445, 851
MseI	TTAA	4 cut(s)	21, 348, 390, 810
MspI	CCGG	3 cut(s)	38, 51, 96
MspR9I	CCNGG	3 cut(s)	122, 681, 803
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	3 cut(s)	122, 681, 803
MvnI	CGCG	2 cut(s)	43, 127
MwoI	GCNNNNNNNGC	7 cut(s)	11, 14, 23, 32, 51, 122, 602
NlaIV	GGNNCC	1 cut(s)	745
PaeR7I	CTCGAG	1 cut(s)	133
PalAI	GGCGCGCC	1 cut(s)	41
PauI	GCGCGC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	281, 466
PflFI	GACNNNGTC	1 cut(s)	108
PfoI	TCCNGGA	1 cut(s)	679
PkrI	GCNGC	8 cut(s)	7, 16, 74, 340, 499, 502, 598, 820
PleI	GAGTC	2 cut(s)	93, 99
PpsI	GAGTC	2 cut(s)	93, 99
Psp124BI	GAGCTC	2 cut(s)	37, 140
Psp6I	CCWGG	3 cut(s)	120, 679, 801
PspFI	CCCAGC	1 cut(s)	712
PspGI	CCWGG	3 cut(s)	120, 679, 801
PspN4I	GGNNCC	1 cut(s)	745
PspPI	GGNCC	1 cut(s)	744
PspXI	VCTCGAGB	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	502
PsyI	GACNNNGTC	1 cut(s)	108
PteI	GCGCGC	1 cut(s)	41
SacI	GAGCTC	2 cut(s)	37, 140
SaqAI	TTAA	4 cut(s)	21, 348, 390, 810
SatI	GCNGC	8 cut(s)	6, 15, 73, 339, 498, 501, 597, 819
Sau96I	GGNCC	1 cut(s)	744
SchI	GAGTC	2 cut(s)	93, 99
ScrFI	CCNGG	3 cut(s)	122, 681, 803
SduI	GDGCHC	2 cut(s)	37, 140
SfaNI	GCATC	2 cut(s)	352, 557
SfcI	CTRYAG	3 cut(s)	498, 589, 672
Sfr274I	CTCGAG	1 cut(s)	133
SgsI	GGCGCGCC	1 cut(s)	41
SinI	GGWCC	1 cut(s)	744
SlaI	CTCGAG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	5 cut(s)	56, 174, 534, 612, 797
SsiI	CCGC	4 cut(s)	5, 15, 73, 86
SspI	AATATT	1 cut(s)	644
SstI	GAGCTC	2 cut(s)	37, 140
StyD4I	CCNGG	3 cut(s)	120, 679, 801
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	355, 376
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	134
TasI	AATT	5 cut(s)	56, 174, 534, 612, 797
TauI	GCSGC	3 cut(s)	8, 17, 75
TfiI	GAWTC	2 cut(s)	281, 466
Tru1I	TTAA	4 cut(s)	21, 348, 390, 810
Tru9I	TTAA	4 cut(s)	21, 348, 390, 810
TseI	GCWGC	5 cut(s)	338, 497, 500, 596, 818
TspDTI	ATGAA	2 cut(s)	446, 530
TspGWI	ACGGA	1 cut(s)	98
Tth111I	GACNNNGTC	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	744
XapI	RAATTY	1 cut(s)	797
XhoI	CTCGAG	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.