Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003182

Physical Location & Seq

Genomic Coordinates Reverse (-)

4491142 .. 4494104

Gene Structure 2963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07680.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCGGCCACGATCGCCTTCAATGCCGCCGGATCTCCGGCCCGCCTCTCCCGCCAATTCTCCCACCCCAGCCGCCGTCCCTATCCGATTCTCGCCGGTCTCCGCCTCCGTCAGGCCGTCCTGGCGCGGTACTCGAGCTCAGTATCTTCCTCCTCCGGCTCAGGAATTAGGGCTCAGTCTGTGGCGGCGGAGCCAGTGAACTATTCGACGGCTCCGAAAGTGGAGGCTCCGGTGGTTGTTGTCACCGGAGCTTCTAGAGGGATTGGCAAGGCGGTTGCGCTAGCTCTCGGGAAATCTGGTTGTAAGGTGCTTGTAAACTATGCAAGGTCGTCTAAGGAAGCCGAACAAGTTTCCAAGGAGATTGAGGAATCTGGCGGTCAAGCTCTGACTTTTGGGGGTGATGTTTCAAAGGAAGAAGATGTAGCAGCTATGATCAAAACTGTGGTTGATGCATGGGGAACAGTTGATATCTTGGTTAATAATGCAGGAATAACACGGGATGGCTTGTTGATGAGAATGAAAAAATCCCAATGGCAGGAGGTTATTGATTTGAATCTTACTGGTGTATTTTTATGCACACAGGCTGCAGCCAAAGTTATGATGAAACAAAGAAAGGGAAGAATTATTAATATAGCATCTGTTGTTGGTCTTGTTGGCAATGTTGGACAAGCCAACTACAGTGCTGCAAAAGCAGGAGTCATTGGCTTCACAAAGAGTGTTGCAAAGGAATATTCAAGCAGGAACATCAATGTCAATGCTGTAGCTCCTGGATTTATTGCATCTGATATGACTGCCAAGCTTGGAGAAGACGTGGAAAAGAAAATCCTTGGGTCCATCCCCTTAGGGCGATATGGTCAACCTGAAGAAGTTGCTGGACTGGTGGAATTCTTGGCTCTGAATCCTGCTGCCGGTTACATTACTGGACAGGTGTTGACCATTGATGGAGGAATGGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

320

Amino Acids

33.3

Weight (kDa)

9.57

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	78 - 270	4.8e-67	short chain dehydrogenase
KR	PF08659	79 - 251	2.5e-21	KR domain
adh_short_C2	PF13561	83 - 284	1.3e-51	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24360
fragaria_vesca	FvH4_4g24340 FvH4_5g07680 FvH4_5g07680
malus_domestica	MD13G1112000.v1.1 MD14G1162300.v1.1 MD16G1111600.v1.1
prunus_persica	Prupe.1G233400_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1
pyrus_communis	pycom13g09740 pycom14g13520 pycom16g09460
rosa_chinensis	RchiOBHm_Chr4g0431201 RchiOBHm_Chr7g0190791
rosa_laevigata	RLG00000004498 RLG00000006920
rosa_multiflora	Rmu_sc0005258.1_g000006 Rmu_sc0032787.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264310 Rroxscaffold_5G00372740
rosa_rugosa	Rorug04G0249100 Rorug06G0506900
rosa_samantha	Rh4AG305200 Rh4BG312500 Rh4CG328800 Rh4DG309100 Rh7AG113600 Rh7BG116100 Rh7CG118700 Rh7CG119000 Rh7DG117600
rosa_wichuraiana	Rw4G026520 Rw7G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	127
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	884
AcuI	CTGAAG	1 cut(s)	882
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	3 cut(s)	112, 535, 908
AgsI	TTSAA	4 cut(s)	22, 408, 553, 735
AjiI	CACGTC	1 cut(s)	811
AjnI	CCWGG	2 cut(s)	120, 766
AluBI	AGCT	7 cut(s)	138, 251, 284, 383, 428, 764, 799
AluI	AGCT	7 cut(s)	138, 251, 284, 383, 428, 764, 799
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	2 cut(s)	133, 287
AoxI	GGCC	3 cut(s)	6, 39, 114
ApeKI	GCWGC	5 cut(s)	425, 584, 587, 683, 905
ApoI	RAATTY	1 cut(s)	884
AseI	ATTAAT	1 cut(s)	627
AspLEI	GCGC	2 cut(s)	127, 280
AspS9I	GGNCC	2 cut(s)	40, 831
AsuHPI	GGTGA	2 cut(s)	235, 410
AsuNHI	GCTAGC	1 cut(s)	280
AvaI	CYCGRG	2 cut(s)	133, 287
AvaII	GGWCC	1 cut(s)	831
AxyI	CCTNAGG	1 cut(s)	841
BanII	GRGCYC	2 cut(s)	140, 175
BbsI	GAAGAC	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	5 cut(s)	437, 571, 599, 670, 892
BccI	CCATC	3 cut(s)	494, 842, 935
BceAI	ACGGC	3 cut(s)	60, 101, 225
BciT130I	CCWGG	2 cut(s)	122, 768
BclI	TGATCA	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	2 cut(s)	255, 281
BfmI	CTRYAG	3 cut(s)	585, 676, 759
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	9 cut(s)	6, 27, 73, 186, 426, 585, 588, 684, 906
BlsI	GCNGC	9 cut(s)	7, 28, 74, 187, 427, 586, 589, 685, 907
Bme1390I	CCNGG	2 cut(s)	122, 768
Bme18I	GGWCC	1 cut(s)	831
BmeT110I	CYCGRG	2 cut(s)	133, 287
BmgBI	CACGTC	1 cut(s)	811
BmgT120I	GGNCC	2 cut(s)	40, 831
BmiI	GGNNCC	4 cut(s)	192, 213, 228, 832
BmrFI	CCNGG	2 cut(s)	122, 768
BmsI	GCATC	3 cut(s)	439, 644, 788
BmtI	GCTAGC	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	813
Bpu10I	CCTNAGC	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	354, 826
BsaWI	WCCGGW	2 cut(s)	229, 245
BsaXI	ACNNNNNCTCC	3 cut(s)	795, 825, 936
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 535, 908
Bse118I	RCCGGY	2 cut(s)	95, 908
Bse1I	ACTGG	4 cut(s)	194, 565, 882, 925
Bse21I	CCTNAGG	1 cut(s)	841
Bse3DI	GCAATG	1 cut(s)	664
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	2 cut(s)	122, 768
BseDI	CCNNGG	2 cut(s)	354, 826
BseGI	GGATG	2 cut(s)	505, 834
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	3 cut(s)	112, 535, 908
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	3 cut(s)	153, 174, 188
BseNI	ACTGG	4 cut(s)	194, 565, 882, 925
BseRI	GAGGAG	1 cut(s)	142
BseXI	GCAGC	5 cut(s)	437, 571, 599, 670, 892
BseYI	CCCAGC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	8, 41, 116
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	140
BsiHKCI	CYCGRG	2 cut(s)	133, 287
BsiSI	CCGG	7 cut(s)	30, 38, 96, 156, 230, 246, 909
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	112, 535, 908
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	8, 41, 116
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	2 cut(s)	133, 287
Bsp1286I	GDGCHC	2 cut(s)	140, 175
Bsp143I	GATC	3 cut(s)	12, 32, 432
BspANI	GGCC	3 cut(s)	8, 41, 116
BspCNI	CTCAG	3 cut(s)	152, 173, 187
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	4 cut(s)	192, 213, 228, 832
BspMAI	CTGCAG	1 cut(s)	589
BspOI	GCTAGC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	664
BsrFI	RCCGGY	2 cut(s)	95, 908
BsrI	ACTGG	4 cut(s)	194, 565, 882, 925
BssAI	RCCGGY	2 cut(s)	95, 908
BssECI	CCNNGG	2 cut(s)	354, 826
BssMI	GATC	3 cut(s)	12, 32, 432
BssT1I	CCWWGG	2 cut(s)	354, 826
Bst2UI	CCWGG	2 cut(s)	122, 768
Bst4CI	ACNGT	3 cut(s)	442, 463, 680
BstC8I	GCNNGC	2 cut(s)	43, 282
BstDEI	CTNAG	5 cut(s)	139, 160, 174, 333, 841
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	505, 834
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	127, 280
BstKTI	GATC	3 cut(s)	15, 35, 435
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	3 cut(s)	12, 32, 432
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 23, 51, 122, 689
BstNI	CCWGG	2 cut(s)	122, 768
BstSCI	CCNGG	2 cut(s)	120, 766
BstSFI	CTRYAG	3 cut(s)	585, 676, 759
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	5 cut(s)	437, 571, 599, 670, 892
BstV2I	GAAGAC	1 cut(s)	813
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	841
BsuRI	GGCC	3 cut(s)	8, 41, 116
BtrI	CACGTC	1 cut(s)	811
BtsCI	GGATG	2 cut(s)	505, 834
BtsIMutI	CAGTG	2 cut(s)	201, 685
Cac8I	GCNNGC	2 cut(s)	43, 282
CfoI	GCGC	2 cut(s)	127, 280
Cfr10I	RCCGGY	2 cut(s)	95, 908
Cfr13I	GGNCC	2 cut(s)	40, 831
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	453
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	5 cut(s)	139, 160, 174, 333, 841
DpnI	GATC	3 cut(s)	14, 34, 434
DpnII	GATC	3 cut(s)	12, 32, 432
EaeI	YGGCCR	1 cut(s)	6
EciI	GGCGGA	2 cut(s)	92, 203
Ecl136II	GAGCTC	1 cut(s)	138
Eco130I	CCWWGG	2 cut(s)	354, 826
Eco24I	GRGCYC	2 cut(s)	140, 175
Eco31I	GGTCTC	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	831
Eco53kI	GAGCTC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	882
Eco81I	CCTNAGG	1 cut(s)	841
Eco88I	CYCGRG	2 cut(s)	133, 287
EcoICRI	GAGCTC	1 cut(s)	138
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	884
EcoRII	CCWGG	2 cut(s)	120, 766
EcoRV	GATATC	1 cut(s)	469
EcoT14I	CCWWGG	2 cut(s)	354, 826
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	2 cut(s)	140, 175
ErhI	CCWWGG	2 cut(s)	354, 826
FaeI	CATG	1 cut(s)	456
FaiI	YATR	8 cut(s)	321, 431, 454, 574, 599, 632, 788, 852
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	1 cut(s)	452
FauI	CCCGC	2 cut(s)	50, 59
FbaI	TGATCA	1 cut(s)	432
Fnu4HI	GCNGC	9 cut(s)	6, 27, 73, 186, 426, 585, 588, 684, 906
FokI	GGATG	2 cut(s)	512, 821
FriOI	GRGCYC	2 cut(s)	140, 175
Fsp4HI	GCNGC	9 cut(s)	6, 27, 73, 186, 426, 585, 588, 684, 906
FspBI	CTAG	2 cut(s)	255, 281
GlaI	GCGC	2 cut(s)	126, 279
GluI	GCNGC	9 cut(s)	6, 27, 73, 186, 426, 585, 588, 684, 906
GsaI	CCCAGC	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	8, 41, 116
HapII	CCGG	7 cut(s)	30, 38, 96, 156, 230, 246, 909
HhaI	GCGC	2 cut(s)	127, 280
Hin1II	CATG	1 cut(s)	456
Hin6I	GCGC	2 cut(s)	125, 278
HinP1I	GCGC	2 cut(s)	125, 278
HincII	GTYRAC	2 cut(s)	857, 933
HindII	GTYRAC	2 cut(s)	857, 933
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	5 cut(s)	88, 368, 553, 696, 898
HpaII	CCGG	7 cut(s)	30, 38, 96, 156, 230, 246, 909
HphI	GGTGA	2 cut(s)	235, 410
Hpy166II	GTNNAC	4 cut(s)	199, 316, 857, 933
Hpy188I	TCNGA	5 cut(s)	87, 216, 387, 784, 897
Hpy188III	TCNNGA	3 cut(s)	162, 255, 289
Hpy8I	GTNNAC	4 cut(s)	199, 316, 857, 933
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	3 cut(s)	442, 463, 680
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	8 cut(s)	323, 452, 485, 576, 587, 686, 722, 779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 23, 51, 122, 689
HpyF3I	CTNAG	5 cut(s)	139, 160, 174, 333, 841
HpySE526I	ACGT	1 cut(s)	810
Hsp92II	CATG	1 cut(s)	456
HspAI	GCGC	2 cut(s)	125, 278
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	3 cut(s)	12, 32, 432
LmnI	GCTCC	5 cut(s)	190, 217, 232, 248, 769
Lsp1109I	GCAGC	5 cut(s)	437, 571, 599, 670, 892
LweI	GCATC	3 cut(s)	439, 644, 788
MaeI	CTAG	2 cut(s)	255, 281
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	2 cut(s)	241, 911
MalI	GATC	3 cut(s)	14, 34, 434
MboI	GATC	3 cut(s)	12, 32, 432
MboII	GAAGA	6 cut(s)	138, 425, 428, 630, 818, 875
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	140, 175
MluCI	AATT	4 cut(s)	56, 165, 621, 884
MlyI	GAGTC	1 cut(s)	705
MmeI	TCCRAC	1 cut(s)	643
MnlI	CCTC	9 cut(s)	56, 116, 160, 163, 217, 251, 358, 532, 938
Mph1103I	ATGCAT	1 cut(s)	454
MseI	TTAA	2 cut(s)	477, 627
MspI	CCGG	7 cut(s)	30, 38, 96, 156, 230, 246, 909
MspR9I	CCNGG	2 cut(s)	122, 768
MvaI	CCWGG	2 cut(s)	122, 768
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	5 cut(s)	14, 23, 51, 122, 689
NdeII	GATC	3 cut(s)	12, 32, 432
NheI	GCTAGC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	456
NlaIV	GGNNCC	4 cut(s)	192, 213, 228, 832
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	454
PaeR7I	CTCGAG	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PfeI	GAWTC	4 cut(s)	88, 368, 553, 898
PfoI	TCCNGGA	1 cut(s)	766
PkrI	GCNGC	9 cut(s)	7, 28, 74, 187, 427, 586, 589, 685, 907
Ple19I	CGATCG	1 cut(s)	15
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
PshBI	ATTAAT	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	120, 766
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	2 cut(s)	120, 766
PspN4I	GGNNCC	4 cut(s)	192, 213, 228, 832
PspPI	GGNCC	2 cut(s)	40, 831
PspXI	VCTCGAGB	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	32
PvuI	CGATCG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SacI	GAGCTC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	477, 627
SatI	GCNGC	9 cut(s)	6, 27, 73, 186, 426, 585, 588, 684, 906
Sau3AI	GATC	3 cut(s)	12, 32, 432
Sau96I	GGNCC	2 cut(s)	40, 831
SchI	GAGTC	1 cut(s)	705
ScrFI	CCNGG	2 cut(s)	122, 768
SduI	GDGCHC	2 cut(s)	140, 175
SfaNI	GCATC	3 cut(s)	439, 644, 788
SfcI	CTRYAG	3 cut(s)	585, 676, 759
Sfr274I	CTCGAG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	831
SlaI	CTCGAG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	4 cut(s)	56, 165, 621, 884
SspI	AATATT	1 cut(s)	731
SspMI	CTAG	2 cut(s)	255, 281
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	120, 766
StyI	CCWWGG	2 cut(s)	354, 826
TaaI	ACNGT	3 cut(s)	442, 463, 680
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	2 cut(s)	134, 206
TasI	AATT	4 cut(s)	56, 165, 621, 884
TauI	GCSGC	4 cut(s)	8, 29, 75, 188
TfiI	GAWTC	4 cut(s)	88, 368, 553, 898
Tru1I	TTAA	2 cut(s)	477, 627
Tru9I	TTAA	2 cut(s)	477, 627
TscAI	CASTG	2 cut(s)	201, 685
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	5 cut(s)	425, 584, 587, 683, 905
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	533, 617
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	201, 685
VpaK11BI	GGWCC	1 cut(s)	831
VspI	ATTAAT	1 cut(s)	627
XagI	CCTNNNNNAGG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	884
XbaI	TCTAGA	1 cut(s)	254
XhoI	CTCGAG	1 cut(s)	133
XspI	CTAG	2 cut(s)	255, 281
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.