Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003182

Physical Location & Seq

Genomic Coordinates Forward (+)

26552551 .. 26556381

Gene Structure 3831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCTTCCGTTGCTGCATCCAACGTCGTCGCTTTGAAGCCCGCCGGAATCAAGTTCCGAGCCGCCGGCAATGCCAGGGCTTTCTGTTTGAAGCAGTGGTGGTCGCCGGTCGGATCGGGCCGGAGCATTGGCCTTCAGTACAGATCCAAGAGCTCCTCCACTTCCTCCGGTGTTGTGAGGGCTCAGGTGGCCACGCTTGAACAAGCAAGTGCAGGAGCAGTCCCAAAAGTGGAGGCTCCTGTTGTGGTGGTGACCGGAGCTTCTAGAGGAATTGGCAAGGCCATTGCTCTGGCTTTGGGCAAAGCTGGTTGTAAGGTTCTTGTTAATTATGCTAGGTCATCAAAGGAGGCCGAAGAGGTTGCCCAAGAGATTGAGGCAGTTGGTGGACAAGCTCTTACTTTTGGAGGAGACGTTTCAAAAGAAGCAGATGTTGAAGCAATGCTCAAAACTGCAGTTGATGCTTGGGGAACTGTTGATATACTGATCAACAATGCAGGAATTACTAGAGATGGTCTGTTGATGAGAATGAAGTTAAAGCAATGGCAGGATGTCATTGACCTAAATCTTACTGGTGTATATTTATGTACCCAGGCAGCAGCCAAAATTATGATGAAGAAGAAGAAGGGAAGGATCATCAATATAGCATCAGTTGTTGGTCTAGTTGGCAATGTTGGACAAGCCAACTATAGTGCTGCAAAAGCAGGAGTAATTGGCCTCACAAAGACTGTTGCTAAGGAGTACTCTAGCAGAAACATCAATGTTAATGCTGTGGCCCCGGGTTTTATTGCATCGGATATGACTGCTGAGCTAGGGGCTGAACTGGAGAAGAAAATTTTACAGACCATCCCCTTAGGAAGATATGGTCAACCTGAAGAGATTGCTGGACTTGTGGAATTCTTGGCCCTTAGCCCTGCAGCCAGCTACATGACTGGACAGGTGCTCACCATTGATGGAGGGATGGTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

323

Amino Acids

33.44

Weight (kDa)

9.46

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	81 - 272	3.5e-66	short chain dehydrogenase
KR	PF08659	82 - 237	1.1e-19	KR domain
adh_short_C2	PF13561	86 - 320	5.3e-65	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24360
fragaria_vesca	FvH4_4g24340 FvH4_5g07680 FvH4_5g07680
malus_domestica	MD13G1112000.v1.1 MD14G1162300.v1.1 MD16G1111600.v1.1
prunus_persica	Prupe.1G233400_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1
pyrus_communis	pycom13g09740 pycom14g13520 pycom16g09460
rosa_chinensis	RchiOBHm_Chr4g0431201 RchiOBHm_Chr7g0190791
rosa_laevigata	RLG00000004498 RLG00000006920
rosa_multiflora	Rmu_sc0005258.1_g000006 Rmu_sc0032787.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264310 Rroxscaffold_5G00372740
rosa_rugosa	Rorug04G0249100 Rorug06G0506900
rosa_samantha	Rh4AG305200 Rh4BG312500 Rh4CG328800 Rh4DG309100 Rh7AG113600 Rh7BG116100 Rh7CG118700 Rh7CG119000 Rh7DG117600
rosa_wichuraiana	Rw4G026520 Rw7G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	42, 63
AclWI	GGATC	3 cut(s)	121, 138, 638
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	831, 893
AcuI	CTGAAG	2 cut(s)	119, 891
AfaI	GTAC	3 cut(s)	140, 586, 740
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	5 cut(s)	37, 91, 200, 417, 434
AjnI	CCWGG	2 cut(s)	74, 588
AluBI	AGCT	6 cut(s)	153, 260, 305, 392, 808, 921
AluI	AGCT	6 cut(s)	153, 260, 305, 392, 808, 921
Alw21I	GWGCWC	2 cut(s)	155, 942
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	3 cut(s)	121, 138, 638
Ama87I	CYCGRG	1 cut(s)	775
AoxI	GGCC	8 cut(s)	118, 130, 189, 279, 348, 712, 771, 900
ApeKI	GCWGC	5 cut(s)	14, 593, 596, 692, 914
ApoI	RAATTY	2 cut(s)	831, 893
AspS9I	GGNCC	3 cut(s)	118, 772, 901
AsuC2I	CCSGG	2 cut(s)	776, 777
AsuHPI	GGTGA	2 cut(s)	262, 934
AvaI	CYCGRG	1 cut(s)	775
AxyI	CCTNAGG	1 cut(s)	850
BalI	TGGCCA	1 cut(s)	191
BanII	GRGCYC	2 cut(s)	155, 184
Bbv12I	GWGCWC	2 cut(s)	155, 942
BbvI	GCAGC	4 cut(s)	605, 608, 679, 926
BccI	CCATC	4 cut(s)	503, 851, 944, 952
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	2 cut(s)	76, 590
BclI	TGATCA	1 cut(s)	483
BcnI	CCSGG	2 cut(s)	776, 777
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	6 cut(s)	264, 333, 504, 659, 744, 809
BfmI	CTRYAG	3 cut(s)	450, 685, 912
BisI	GCNGC	6 cut(s)	15, 63, 594, 597, 693, 915
BlpI	GCTNAGC	1 cut(s)	804
BlsI	GCNGC	6 cut(s)	16, 64, 595, 598, 694, 916
BmcAI	AGTACT	1 cut(s)	740
Bme1390I	CCNGG	4 cut(s)	76, 590, 776, 777
BmeT110I	CYCGRG	1 cut(s)	775
BmgT120I	GGNCC	3 cut(s)	118, 772, 901
BmiI	GGNNCC	2 cut(s)	237, 774
BmrFI	CCNGG	4 cut(s)	76, 590, 776, 777
BmsI	GCATC	4 cut(s)	26, 448, 653, 797
BpmI	CTGGAG	1 cut(s)	842
Bpu10I	CCTNAGC	3 cut(s)	183, 732, 905
Bpu1102I	GCTNAGC	1 cut(s)	804
BpuMI	CCSGG	2 cut(s)	776, 777
BsaJI	CCNNGG	4 cut(s)	75, 588, 774, 775
BsaWI	WCCGGW	2 cut(s)	167, 254
BsaXI	ACNNNNNCTCC	3 cut(s)	396, 426, 945
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	2 cut(s)	65, 106
Bse1I	ACTGG	3 cut(s)	574, 825, 934
Bse21I	CCTNAGG	1 cut(s)	850
Bse3DI	GCAATG	5 cut(s)	76, 282, 444, 545, 673
BseBI	CCWGG	2 cut(s)	76, 590
BseDI	CCNNGG	4 cut(s)	75, 588, 774, 775
BseGI	GGATG	4 cut(s)	17, 553, 843, 963
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	5 cut(s)	76, 282, 444, 545, 673
BseMII	CTCAG	2 cut(s)	197, 795
BseNI	ACTGG	3 cut(s)	574, 825, 934
BseRI	GAGGAG	2 cut(s)	145, 420
BseXI	GCAGC	4 cut(s)	605, 608, 679, 926
BsgI	GTGCAG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	8 cut(s)	120, 132, 191, 281, 350, 714, 773, 902
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	2 cut(s)	155, 942
BsiHKCI	CYCGRG	1 cut(s)	775
BsiSI	CCGG	7 cut(s)	45, 66, 107, 121, 168, 255, 776
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	402
BsmBI	CGTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	8 cut(s)	120, 132, 191, 281, 350, 714, 773, 902
BsoBI	CYCGRG	1 cut(s)	775
Bsp1286I	GDGCHC	3 cut(s)	155, 184, 942
Bsp143I	GATC	4 cut(s)	113, 143, 483, 630
Bsp1720I	GCTNAGC	1 cut(s)	804
BspACI	CCGC	2 cut(s)	42, 63
BspANI	GGCC	8 cut(s)	120, 132, 191, 281, 350, 714, 773, 902
BspCNI	CTCAG	2 cut(s)	196, 796
BspLI	GGNNCC	2 cut(s)	237, 774
BspMAI	CTGCAG	2 cut(s)	454, 916
BspPI	GGATC	3 cut(s)	121, 138, 638
BsrDI	GCAATG	5 cut(s)	76, 282, 444, 545, 673
BsrFI	RCCGGY	2 cut(s)	65, 106
BsrI	ACTGG	3 cut(s)	574, 825, 934
BssAI	RCCGGY	2 cut(s)	65, 106
BssECI	CCNNGG	4 cut(s)	75, 588, 774, 775
BssMI	GATC	4 cut(s)	113, 143, 483, 630
Bst2UI	CCWGG	2 cut(s)	76, 590
Bst4CI	ACNGT	2 cut(s)	472, 727
Bst6I	CTCTTC	2 cut(s)	348, 867
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	3 cut(s)	42, 67, 919
BstDEI	CTNAG	5 cut(s)	183, 732, 804, 850, 905
BstEII	GGTNACC	1 cut(s)	250
BstF5I	GGATG	4 cut(s)	17, 553, 843, 963
BstKTI	GATC	4 cut(s)	116, 146, 486, 633
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	4 cut(s)	113, 143, 483, 630
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 71, 188, 458, 698
BstNI	CCWGG	2 cut(s)	76, 590
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	4 cut(s)	74, 588, 774, 775
BstSFI	CTRYAG	3 cut(s)	450, 685, 912
BstV1I	GCAGC	4 cut(s)	605, 608, 679, 926
BstX2I	RGATCY	1 cut(s)	143
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	143
Bsu36I	CCTNAGG	1 cut(s)	850
BsuRI	GGCC	8 cut(s)	120, 132, 191, 281, 350, 714, 773, 902
BtsCI	GGATG	4 cut(s)	17, 553, 843, 963
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	3 cut(s)	42, 67, 919
Cfr10I	RCCGGY	2 cut(s)	65, 106
Cfr13I	GGNCC	3 cut(s)	118, 772, 901
Cfr9I	CCCGGG	1 cut(s)	775
Csp6I	GTAC	3 cut(s)	139, 585, 739
CviAII	CATG	1 cut(s)	925
CviQI	GTAC	3 cut(s)	139, 585, 739
DdeI	CTNAG	5 cut(s)	183, 732, 804, 850, 905
DpnI	GATC	4 cut(s)	115, 145, 485, 632
DpnII	GATC	4 cut(s)	113, 143, 483, 630
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	348, 867
EarI	CTCTTC	2 cut(s)	348, 867
Ecl136II	GAGCTC	1 cut(s)	153
Eco24I	GRGCYC	2 cut(s)	155, 184
Eco53kI	GAGCTC	1 cut(s)	153
Eco57I	CTGAAG	2 cut(s)	119, 891
Eco81I	CCTNAGG	1 cut(s)	850
Eco88I	CYCGRG	1 cut(s)	775
Eco91I	GGTNACC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	893
EcoRII	CCWGG	2 cut(s)	74, 588
EcoT38I	GRGCYC	2 cut(s)	155, 184
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	1 cut(s)	928
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	1 cut(s)	924
FauI	CCCGC	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	483
Fnu4HI	GCNGC	6 cut(s)	15, 63, 594, 597, 693, 915
FokI	GGATG	3 cut(s)	4, 560, 830
FriOI	GRGCYC	2 cut(s)	155, 184
Fsp4HI	GCNGC	6 cut(s)	15, 63, 594, 597, 693, 915
FspBI	CTAG	6 cut(s)	264, 333, 504, 659, 744, 809
GluI	GCNGC	6 cut(s)	15, 63, 594, 597, 693, 915
GsuI	CTGGAG	1 cut(s)	842
HaeIII	GGCC	8 cut(s)	120, 132, 191, 281, 350, 714, 773, 902
HapII	CCGG	7 cut(s)	45, 66, 107, 121, 168, 255, 776
Hin1II	CATG	1 cut(s)	928
HincII	GTYRAC	1 cut(s)	866
HindII	GTYRAC	1 cut(s)	866
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	7 cut(s)	45, 66, 107, 121, 168, 255, 776
HphI	GGTGA	2 cut(s)	262, 934
Hpy166II	GTNNAC	2 cut(s)	386, 866
Hpy188I	TCNGA	3 cut(s)	59, 113, 793
Hpy188III	TCNNGA	1 cut(s)	264
Hpy8I	GTNNAC	2 cut(s)	386, 866
Hpy99I	CGWCG	2 cut(s)	29, 32
HpyAV	CCTTC	3 cut(s)	143, 616, 621
HpyCH4III	ACNGT	2 cut(s)	472, 727
HpyCH4IV	ACGT	2 cut(s)	24, 411
HpyCH4V	TGCA	7 cut(s)	17, 212, 452, 494, 695, 788, 914
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 71, 188, 458, 698
HpyF3I	CTNAG	5 cut(s)	183, 732, 804, 850, 905
HpySE526I	ACGT	2 cut(s)	24, 411
Hsp92II	CATG	1 cut(s)	928
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	4 cut(s)	113, 143, 483, 630
LmnI	GCTCC	5 cut(s)	123, 158, 215, 241, 257
Lsp1109I	GCAGC	4 cut(s)	605, 608, 679, 926
LweI	GCATC	4 cut(s)	26, 448, 653, 797
MaeI	CTAG	6 cut(s)	264, 333, 504, 659, 744, 809
MaeII	ACGT	2 cut(s)	24, 411
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	4 cut(s)	115, 145, 485, 632
MboI	GATC	4 cut(s)	113, 143, 483, 630
MboII	GAAGA	7 cut(s)	365, 625, 628, 631, 838, 867, 884
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	3 cut(s)	155, 184, 942
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	7 cut(s)	270, 325, 498, 603, 708, 831, 893
MluNI	TGGCCA	1 cut(s)	191
MmeI	TCCRAC	3 cut(s)	45, 91, 652
Mox20I	TGGCCA	1 cut(s)	191
MroNI	GCCGGC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	3 cut(s)	324, 533, 762
Msp20I	TGGCCA	1 cut(s)	191
MspI	CCGG	7 cut(s)	45, 66, 107, 121, 168, 255, 776
MspR9I	CCNGG	4 cut(s)	76, 590, 776, 777
MvaI	CCWGG	2 cut(s)	76, 590
MwoI	GCNNNNNNNGC	5 cut(s)	11, 71, 188, 458, 698
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	2 cut(s)	776, 777
NdeII	GATC	4 cut(s)	113, 143, 483, 630
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	928
NlaIV	GGNNCC	2 cut(s)	237, 774
NmuCI	GTSAC	1 cut(s)	250
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	6 cut(s)	16, 64, 595, 598, 694, 916
Psp124BI	GAGCTC	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	74, 588
PspEI	GGTNACC	1 cut(s)	250
PspGI	CCWGG	2 cut(s)	74, 588
PspN4I	GGNNCC	2 cut(s)	237, 774
PspPI	GGNCC	3 cut(s)	118, 772, 901
PstI	CTGCAG	2 cut(s)	454, 916
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	3 cut(s)	140, 586, 740
RsaNI	GTAC	3 cut(s)	139, 585, 739
SacI	GAGCTC	1 cut(s)	155
SaqAI	TTAA	3 cut(s)	324, 533, 762
SatI	GCNGC	6 cut(s)	15, 63, 594, 597, 693, 915
Sau3AI	GATC	4 cut(s)	113, 143, 483, 630
Sau96I	GGNCC	3 cut(s)	118, 772, 901
ScaI	AGTACT	1 cut(s)	740
ScrFI	CCNGG	4 cut(s)	76, 590, 776, 777
SduI	GDGCHC	3 cut(s)	155, 184, 942
SfaNI	GCATC	4 cut(s)	26, 448, 653, 797
SfcI	CTRYAG	3 cut(s)	450, 685, 912
SmaI	CCCGGG	1 cut(s)	777
Sse9I	AATT	7 cut(s)	270, 325, 498, 603, 708, 831, 893
SsiI	CCGC	2 cut(s)	42, 63
SspMI	CTAG	6 cut(s)	264, 333, 504, 659, 744, 809
SstI	GAGCTC	1 cut(s)	155
StyD4I	CCNGG	4 cut(s)	74, 588, 774, 775
TaaI	ACNGT	2 cut(s)	472, 727
TaiI	ACGT	2 cut(s)	27, 414
TasI	AATT	7 cut(s)	270, 325, 498, 603, 708, 831, 893
TatI	WGTACW	2 cut(s)	138, 738
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	3 cut(s)	324, 533, 762
Tru9I	TTAA	3 cut(s)	324, 533, 762
TscAI	CASTG	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	5 cut(s)	14, 593, 596, 692, 914
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	542, 626
TspMI	CCCGGG	1 cut(s)	775
TspRI	CASTG	1 cut(s)	101
XapI	RAATTY	2 cut(s)	831, 893
XbaI	TCTAGA	1 cut(s)	263
XmaI	CCCGGG	1 cut(s)	775
XspI	CTAG	6 cut(s)	264, 333, 504, 659, 744, 809
ZrmI	AGTACT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.