Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003182

Physical Location & Seq

Genomic Coordinates Forward (+)

8687032 .. 8690087

Gene Structure 3056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG116100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCGGCCACGATCGCCTTTAACGCCGTCGGAGCTCCGGCGCGCCTCTCCCGCCAATTGTCTCACCCGAGCCGCCGTCCCTATCCGCTTCTCGCCGGACTCCGACTCCGTCAGGCCGTCCCGGCGCGATACTCGAGCTCAGTATCTTCGTCCTCTGGCTCAGGAATTAGGGCTCAGTCTGTCGCCGTGGAGTCACTGAGCGCTGCTACAGCTCCGAAAGTGGAGGCTCCTGTGGTTATTGTCACCGGAGCTTCTAGAGGAATTGGCAAGGCTGTTGCCCTCGCTTTCGGAAAATCTGGTTGTAAGGTGCTTGTAAACTATGCAAGGTCATGTAAGGAAGCCGAACAAGTTTCCAAGGAGATTGAGGAATCTGGTGGTCAAGCTCTGACGTTTGGGGGTGATGTTTCAAAGGAAGAAGATGTAGCAGCAATGATTAAAACTGTGGTTGATGCGTGGGGAACAGTTGATGTCTTGGTTAACAATGCAGGAATAACACGGGATGGCTTGTTGATGAGAATGAAAAAATCCCAATGGCAGGAGGTTATTGATTTGAATCTTACTGGTGTATTTTTATGCACACAGGCTGCAGCCAAAGTTATGATGAAACAAAGAAAGGGAAGAATTATCAATATAGCATCTGTTGTTGGTCTTGTTGGCAATGTTGGACAAGCCAACTACAGCGCTGCAAAAGCAGGGGTAATTGGCTTCACAAAGAGTGTTGCAAAGGAATATTCAAGCAGGAACATCAATGTCAATGCTGTAGCTCCTGGATTTATTGCGTCTGATATGACTGCCAAGCTGGGAGAAGACATAGAAAAGAAAATCATTGGGTCCATCCCCTTAGGTGAGAACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

285

Amino Acids

29.72

Weight (kDa)

9.73

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	78 - 270	2e-66	short chain dehydrogenase
KR	PF08659	79 - 251	1.4e-20	KR domain
adh_short_C2	PF13561	83 - 284	1.4e-51	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24360
fragaria_vesca	FvH4_4g24340 FvH4_5g07680 FvH4_5g07680
malus_domestica	MD13G1112000.v1.1 MD14G1162300.v1.1 MD16G1111600.v1.1
prunus_persica	Prupe.1G233400_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1
pyrus_communis	pycom13g09740 pycom14g13520 pycom16g09460
rosa_chinensis	RchiOBHm_Chr4g0431201 RchiOBHm_Chr7g0190791
rosa_laevigata	RLG00000004498 RLG00000006920
rosa_multiflora	Rmu_sc0005258.1_g000006 Rmu_sc0032787.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264310 Rroxscaffold_5G00372740
rosa_rugosa	Rorug04G0249100 Rorug06G0506900
rosa_samantha	Rh4AG305200 Rh4BG312500 Rh4CG328800 Rh4DG309100 Rh7AG113600 Rh7BG116100 Rh7CG118700 Rh7CG119000 Rh7DG117600
rosa_wichuraiana	Rw4G026520 Rw7G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	43, 127
AciI	CCGC	4 cut(s)	5, 52, 73, 86
AcoI	YGGCCR	1 cut(s)	6
AfeI	AGCGCT	2 cut(s)	202, 682
AfiI	CCNNNNNNNGG	1 cut(s)	535
AgsI	TTSAA	3 cut(s)	408, 553, 735
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	7 cut(s)	35, 138, 212, 251, 383, 764, 799
AluI	AGCT	7 cut(s)	35, 138, 212, 251, 383, 764, 799
Alw21I	GWGCWC	2 cut(s)	37, 140
Alw26I	GTCTC	1 cut(s)	66
Ama87I	CYCGRG	2 cut(s)	67, 133
Aor51HI	AGCGCT	2 cut(s)	202, 682
AoxI	GGCC	2 cut(s)	6, 114
ApeKI	GCWGC	5 cut(s)	203, 425, 584, 587, 683
AscI	GGCGCGCC	1 cut(s)	41
AspLEI	GCGC	5 cut(s)	43, 45, 127, 203, 683
AspS9I	GGNCC	1 cut(s)	831
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	4 cut(s)	56, 235, 410, 857
AvaI	CYCGRG	2 cut(s)	67, 133
AvaII	GGWCC	1 cut(s)	831
AxyI	CCTNAGG	1 cut(s)	841
BanII	GRGCYC	3 cut(s)	37, 140, 175
BbsI	GAAGAC	1 cut(s)	813
Bbv12I	GWGCWC	2 cut(s)	37, 140
BbvI	GCAGC	5 cut(s)	190, 437, 571, 599, 670
BccI	CCATC	2 cut(s)	494, 842
BceAI	ACGGC	4 cut(s)	11, 60, 101, 170
BciT130I	CCWGG	1 cut(s)	768
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	2 cut(s)	255, 856
BfmI	CTRYAG	4 cut(s)	207, 585, 676, 759
BfoI	RGCGCY	2 cut(s)	204, 684
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	7 cut(s)	6, 73, 204, 426, 585, 588, 684
BlsI	GCNGC	7 cut(s)	7, 74, 205, 427, 586, 589, 685
Bme1390I	CCNGG	2 cut(s)	122, 768
Bme18I	GGWCC	1 cut(s)	831
BmeT110I	CYCGRG	2 cut(s)	67, 133
BmgT120I	GGNCC	1 cut(s)	831
BmiI	GGNNCC	2 cut(s)	228, 832
BmrFI	CCNGG	2 cut(s)	122, 768
BmsI	GCATC	2 cut(s)	439, 644
BpiI	GAAGAC	1 cut(s)	813
Bpu10I	CCTNAGC	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	186, 354
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse1I	ACTGG	1 cut(s)	565
Bse21I	CCTNAGG	1 cut(s)	841
Bse3DI	GCAATG	2 cut(s)	435, 664
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	2 cut(s)	186, 354
BseGI	GGATG	2 cut(s)	505, 834
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMI	GCAATG	2 cut(s)	435, 664
BseMII	CTCAG	4 cut(s)	153, 174, 188, 188
BseNI	ACTGG	1 cut(s)	565
BsePI	GCGCGC	1 cut(s)	41
BseXI	GCAGC	5 cut(s)	190, 437, 571, 599, 670
BseYI	CCCAGC	1 cut(s)	799
Bsh1236I	CGCG	2 cut(s)	43, 127
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	8, 116
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	37, 140
BsiHKCI	CYCGRG	2 cut(s)	67, 133
BsiSI	CCGG	4 cut(s)	38, 96, 122, 246
BslFI	GGGAC	2 cut(s)	63, 104
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	63, 104
BsnI	GGCC	2 cut(s)	8, 116
BsoBI	CYCGRG	2 cut(s)	67, 133
Bsp1286I	GDGCHC	3 cut(s)	37, 140, 175
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	4 cut(s)	5, 52, 73, 86
BspANI	GGCC	2 cut(s)	8, 116
BspCNI	CTCAG	4 cut(s)	152, 173, 187, 189
BspFNI	CGCG	2 cut(s)	43, 127
BspLI	GGNNCC	2 cut(s)	228, 832
BspMAI	CTGCAG	1 cut(s)	589
BsrDI	GCAATG	2 cut(s)	435, 664
BsrI	ACTGG	1 cut(s)	565
BssECI	CCNNGG	2 cut(s)	186, 354
BssHII	GCGCGC	1 cut(s)	41
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	442, 463
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	5 cut(s)	139, 160, 174, 197, 841
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	505, 834
BstFNI	CGCG	2 cut(s)	43, 127
BstH2I	RGCGCY	2 cut(s)	204, 684
BstHHI	GCGC	5 cut(s)	43, 45, 127, 203, 683
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	12
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 23, 32, 51, 122, 209, 689
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	2 cut(s)	120, 766
BstSFI	CTRYAG	4 cut(s)	207, 585, 676, 759
BstUI	CGCG	2 cut(s)	43, 127
BstV1I	GCAGC	5 cut(s)	190, 437, 571, 599, 670
BstV2I	GAAGAC	1 cut(s)	813
Bsu36I	CCTNAGG	1 cut(s)	841
BsuRI	GGCC	2 cut(s)	8, 116
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	505, 834
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	5 cut(s)	43, 45, 127, 203, 683
Cfr13I	GGNCC	1 cut(s)	831
CseI	GACGC	1 cut(s)	768
CviAII	CATG	1 cut(s)	330
DdeI	CTNAG	5 cut(s)	139, 160, 174, 197, 841
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	6
Ecl136II	GAGCTC	2 cut(s)	35, 138
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	3 cut(s)	37, 140, 175
Eco47I	GGWCC	1 cut(s)	831
Eco47III	AGCGCT	2 cut(s)	202, 682
Eco53kI	GAGCTC	2 cut(s)	35, 138
Eco81I	CCTNAGG	1 cut(s)	841
Eco88I	CYCGRG	2 cut(s)	67, 133
EcoICRI	GAGCTC	2 cut(s)	35, 138
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	3 cut(s)	37, 140, 175
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	333
FaiI	YATR	7 cut(s)	321, 331, 574, 599, 632, 788, 812
FaqI	GGGAC	2 cut(s)	63, 104
FatI	CATG	1 cut(s)	329
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	7 cut(s)	6, 73, 204, 426, 585, 588, 684
FokI	GGATG	2 cut(s)	512, 821
FriOI	GRGCYC	3 cut(s)	37, 140, 175
Fsp4HI	GCNGC	7 cut(s)	6, 73, 204, 426, 585, 588, 684
FspBI	CTAG	2 cut(s)	255, 856
GlaI	GCGC	5 cut(s)	42, 44, 126, 202, 682
GluI	GCNGC	7 cut(s)	6, 73, 204, 426, 585, 588, 684
GsaI	CCCAGC	1 cut(s)	803
HaeII	RGCGCY	2 cut(s)	204, 684
HaeIII	GGCC	2 cut(s)	8, 116
HapII	CCGG	4 cut(s)	38, 96, 122, 246
HgaI	GACGC	1 cut(s)	768
HhaI	GCGC	5 cut(s)	43, 45, 127, 203, 683
Hin1II	CATG	1 cut(s)	333
Hin6I	GCGC	5 cut(s)	41, 43, 125, 201, 681
HinP1I	GCGC	5 cut(s)	41, 43, 125, 201, 681
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	5 cut(s)	99, 105, 191, 368, 553
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	4 cut(s)	38, 96, 122, 246
HphI	GGTGA	4 cut(s)	56, 235, 410, 857
Hpy166II	GTNNAC	2 cut(s)	316, 478
Hpy188I	TCNGA	6 cut(s)	32, 104, 216, 290, 387, 784
Hpy188III	TCNNGA	2 cut(s)	162, 255
Hpy8I	GTNNAC	2 cut(s)	316, 478
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	442, 463
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	6 cut(s)	323, 485, 576, 587, 686, 722
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 23, 32, 51, 122, 209, 689
HpyF3I	CTNAG	5 cut(s)	139, 160, 174, 197, 841
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	1 cut(s)	333
HspAI	GCGC	5 cut(s)	41, 43, 125, 201, 681
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	6 cut(s)	32, 40, 217, 232, 248, 769
Lsp1109I	GCAGC	5 cut(s)	190, 437, 571, 599, 670
LweI	GCATC	2 cut(s)	439, 644
MaeI	CTAG	2 cut(s)	255, 856
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	2 cut(s)	192, 241
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	5 cut(s)	138, 425, 428, 630, 818
MfeI	CAATTG	1 cut(s)	56
MhlI	GDGCHC	3 cut(s)	37, 140, 175
MluCI	AATT	5 cut(s)	56, 165, 261, 621, 699
MlyI	GAGTC	3 cut(s)	93, 99, 200
MmeI	TCCRAC	3 cut(s)	10, 127, 643
MnlI	CCTC	7 cut(s)	56, 163, 217, 251, 290, 358, 532
MseI	TTAA	3 cut(s)	21, 435, 477
MspI	CCGG	4 cut(s)	38, 96, 122, 246
MspR9I	CCNGG	2 cut(s)	122, 768
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	2 cut(s)	43, 127
MwoI	GCNNNNNNNGC	7 cut(s)	14, 23, 32, 51, 122, 209, 689
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	1 cut(s)	333
NlaIV	GGNNCC	2 cut(s)	228, 832
NmuCI	GTSAC	2 cut(s)	192, 241
PaeR7I	CTCGAG	1 cut(s)	133
PalAI	GGCGCGCC	1 cut(s)	41
PauI	GCGCGC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	368, 553
PflFI	GACNNNGTC	1 cut(s)	108
PfoI	TCCNGGA	1 cut(s)	766
PkrI	GCNGC	7 cut(s)	7, 74, 205, 427, 586, 589, 685
Ple19I	CGATCG	1 cut(s)	15
PleI	GAGTC	3 cut(s)	93, 99, 199
PpsI	GAGTC	3 cut(s)	93, 99, 199
Psp124BI	GAGCTC	2 cut(s)	37, 140
Psp6I	CCWGG	1 cut(s)	766
PspFI	CCCAGC	1 cut(s)	799
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	2 cut(s)	228, 832
PspPI	GGNCC	1 cut(s)	831
PspXI	VCTCGAGB	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	108
PteI	GCGCGC	1 cut(s)	41
PvuI	CGATCG	1 cut(s)	15
SacI	GAGCTC	2 cut(s)	37, 140
SaqAI	TTAA	3 cut(s)	21, 435, 477
SatI	GCNGC	7 cut(s)	6, 73, 204, 426, 585, 588, 684
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	1 cut(s)	831
SchI	GAGTC	3 cut(s)	93, 99, 200
ScrFI	CCNGG	2 cut(s)	122, 768
SduI	GDGCHC	3 cut(s)	37, 140, 175
SfaNI	GCATC	2 cut(s)	439, 644
SfcI	CTRYAG	4 cut(s)	207, 585, 676, 759
Sfr274I	CTCGAG	1 cut(s)	133
SgsI	GGCGCGCC	1 cut(s)	41
SinI	GGWCC	1 cut(s)	831
SlaI	CTCGAG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	5 cut(s)	56, 165, 261, 621, 699
SsiI	CCGC	4 cut(s)	5, 52, 73, 86
SspI	AATATT	1 cut(s)	731
SspMI	CTAG	2 cut(s)	255, 856
SstI	GAGCTC	2 cut(s)	37, 140
StyD4I	CCNGG	2 cut(s)	120, 766
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	442, 463
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	1 cut(s)	134
TasI	AATT	5 cut(s)	56, 165, 261, 621, 699
TauI	GCSGC	2 cut(s)	8, 75
TfiI	GAWTC	2 cut(s)	368, 553
Tru1I	TTAA	3 cut(s)	21, 435, 477
Tru9I	TTAA	3 cut(s)	21, 435, 477
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	192, 241
TseI	GCWGC	5 cut(s)	203, 425, 584, 587, 683
Tsp45I	GTSAC	2 cut(s)	192, 241
TspDTI	ATGAA	2 cut(s)	533, 617
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	201
Tth111I	GACNNNGTC	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	831
XbaI	TCTAGA	1 cut(s)	254
XhoI	CTCGAG	1 cut(s)	133
XspI	CTAG	2 cut(s)	255, 856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.