Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003182

Physical Location & Seq

Genomic Coordinates Reverse (-)

6507499 .. 6509889

Gene Structure 2391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09740.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGTTTCCATCGCTGCATCAAACGTCGTTGCTCTAAAGTCCGATGTTAAATTTGGAGCTCCCGCCGACGCCAGGGCCTGCCACTTTAAGCAATGGGCCCCGATTGGCGGCACAGCCGGATCGGGTCGGAGCATTGGGCTTCAGTACAGATCCAAGCGCTCCTCCACTTCCTCTGGTCACGTGAGGGCTCAGGTGGCGACGTTTGAGCAAGCGAGCGCCGGGGAAGCCAAAATCGTGGAGGGTCCGGTGGTGGTGGTGACCGGAGCTTCTAGAGGCATTGGCAGAGCAATTGCTCTGTCTTTGGGCAAAGCTGGTTGCAGGATTGAGGCGTTCGGTGGACAAGCTATTACTTTCGGAGGAGATGTTTCAAAAGAAGAAGATGTTGAGGCGATGCTCAAAACAGCGCTTGATGCTTGGGGAACTGTTGATGTACTGATAAACAATGCAGGAATTACCAGGGATGGTCTATTGATGAGAATGAAGTTAAAACAATGGCAGGAGGTCATTGATCTAAATCTTACTGGTGTATATCTATGCACCCAGGCAGCAGCTAAAATCATGATGAAGAAGAAGAAGGGAAGGATTATCAATATAGCATCCGTTGTTGGTCTAGTTGGAAATGTTGGACAAGCCAACTACAGTGCTGCAAAAGCAGGAGTAATTGGTCTGACCAAGACTGTTGCTAAGGAGTACTCCAGCAGACACATCAATGTTAATGCTGTTGCCCCGGGCTTTATTGCATCAGACATGACTGCCAAGCTAGGTGATGACATTGAGAAGAAAATTTTAGAGACTATCCCATTAGGAAGATATGGCCAACCCGACGAAGTTGCTGGACTGGTGGAATTCTTGGCCCTTAGTCCAGCGGCCAGTTACATGACCGGACAGGTGCTTACCATTGATGGAGGGATGGTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

307

Amino Acids

31.9

Weight (kDa)

9.35

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24360
fragaria_vesca	FvH4_4g24340 FvH4_5g07680 FvH4_5g07680
malus_domestica	MD13G1112000.v1.1 MD14G1162300.v1.1 MD16G1111600.v1.1
prunus_persica	Prupe.1G233400_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.3G006500_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1 Prupe.5G154900_v2.0.a1
pyrus_communis	pycom13g09740 pycom14g13520 pycom16g09460
rosa_chinensis	RchiOBHm_Chr4g0431201 RchiOBHm_Chr7g0190791
rosa_laevigata	RLG00000004498 RLG00000006920
rosa_multiflora	Rmu_sc0005258.1_g000006 Rmu_sc0032787.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264310 Rroxscaffold_5G00372740
rosa_rugosa	Rorug04G0249100 Rorug06G0506900
rosa_samantha	Rh4AG305200 Rh4BG312500 Rh4CG328800 Rh4DG309100 Rh7AG113600 Rh7BG116100 Rh7CG118700 Rh7CG119000 Rh7DG117600
rosa_wichuraiana	Rw4G026520 Rw7G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	63, 108, 866
AclWI	GGATC	2 cut(s)	127, 144
AcoI	YGGCCR	2 cut(s)	814, 867
AcsI	RAATTY	3 cut(s)	50, 783, 845
AcuI	CTGAAG	1 cut(s)	125
AcvI	CACGTG	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	3 cut(s)	146, 432, 692
AfeI	AGCGCT	2 cut(s)	158, 405
AfiI	CCNNNNNNNGG	2 cut(s)	72, 107
AgsI	TTSAA	1 cut(s)	369
AjnI	CCWGG	3 cut(s)	71, 455, 540
AluBI	AGCT	6 cut(s)	59, 266, 311, 344, 551, 760
AluI	AGCT	6 cut(s)	59, 266, 311, 344, 551, 760
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	785
AlwI	GGATC	2 cut(s)	127, 144
AlwNI	CAGNNNCTG	1 cut(s)	78
Ama87I	CYCGRG	1 cut(s)	727
Aor51HI	AGCGCT	2 cut(s)	158, 405
AoxI	GGCC	5 cut(s)	75, 96, 814, 852, 867
ApaI	GGGCCC	1 cut(s)	100
ApeKI	GCWGC	4 cut(s)	14, 545, 548, 644
ApoI	RAATTY	3 cut(s)	50, 783, 845
AspLEI	GCGC	3 cut(s)	159, 218, 406
AspS9I	GGNCC	5 cut(s)	75, 96, 97, 242, 853
AsuC2I	CCSGG	3 cut(s)	220, 728, 729
AsuHPI	GGTGA	2 cut(s)	268, 776
AvaI	CYCGRG	1 cut(s)	727
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	100
BalI	TGGCCA	1 cut(s)	816
BanII	GRGCYC	3 cut(s)	61, 100, 190
BbrPI	CACGTG	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	557, 560, 631
BccI	CCATC	4 cut(s)	17, 455, 896, 904
BcgI	CGANNNNNNTGC	2 cut(s)	812, 846
BciT130I	CCWGG	3 cut(s)	73, 457, 542
BcnI	CCSGG	3 cut(s)	220, 728, 729
BcoDI	GTCTC	1 cut(s)	785
BfaI	CTAG	3 cut(s)	270, 611, 761
BfmI	CTRYAG	1 cut(s)	637
BfoI	RGCGCY	3 cut(s)	160, 219, 407
BisI	GCNGC	6 cut(s)	15, 109, 546, 549, 645, 867
BlsI	GCNGC	6 cut(s)	16, 110, 547, 550, 646, 868
BmcAI	AGTACT	1 cut(s)	692
Bme1390I	CCNGG	6 cut(s)	73, 220, 457, 542, 728, 729
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	727
BmgT120I	GGNCC	5 cut(s)	75, 96, 97, 242, 853
BmiI	GGNNCC	3 cut(s)	98, 99, 243
BmrFI	CCNGG	6 cut(s)	73, 220, 457, 542, 728, 729
BmsI	GCATC	5 cut(s)	26, 381, 400, 605, 749
BpmI	CTGGAG	1 cut(s)	679
Bpu10I	CCTNAGC	2 cut(s)	189, 684
BpuMI	CCSGG	3 cut(s)	220, 728, 729
BsaAI	YACGTR	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	6 cut(s)	72, 219, 456, 540, 726, 727
BsaWI	WCCGGW	3 cut(s)	244, 260, 881
BsaXI	ACNNNNNCTCC	3 cut(s)	348, 378, 897
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 107
Bse1I	ACTGG	3 cut(s)	526, 843, 870
Bse3DI	GCAATG	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	3 cut(s)	73, 457, 542
BseDI	CCNNGG	6 cut(s)	72, 219, 456, 540, 726, 727
BseGI	GGATG	3 cut(s)	466, 596, 915
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	2 cut(s)	72, 107
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	3 cut(s)	526, 843, 870
BseRI	GAGGAG	2 cut(s)	151, 372
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	557, 560, 631
BshFI	GGCC	5 cut(s)	77, 98, 816, 854, 869
BsiHKAI	GWGCWC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	727
BsiSI	CCGG	6 cut(s)	117, 219, 245, 261, 728, 882
BslI	CCNNNNNNNGG	2 cut(s)	72, 107
BsmAI	GTCTC	1 cut(s)	785
BsnI	GGCC	5 cut(s)	77, 98, 816, 854, 869
BsoBI	CYCGRG	1 cut(s)	727
Bsp120I	GGGCCC	1 cut(s)	96
Bsp1286I	GDGCHC	3 cut(s)	61, 100, 190
Bsp143I	GATC	3 cut(s)	119, 149, 508
BspACI	CCGC	3 cut(s)	63, 108, 866
BspANI	GGCC	5 cut(s)	77, 98, 816, 854, 869
BspCNI	CTCAG	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	3 cut(s)	98, 99, 243
BspPI	GGATC	2 cut(s)	127, 144
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	3 cut(s)	526, 843, 870
BssECI	CCNNGG	6 cut(s)	72, 219, 456, 540, 726, 727
BssMI	GATC	3 cut(s)	119, 149, 508
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	3 cut(s)	73, 457, 542
Bst4CI	ACNGT	3 cut(s)	424, 641, 679
BstACI	GRCGYC	1 cut(s)	69
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	3 cut(s)	79, 210, 214
BstDEI	CTNAG	3 cut(s)	189, 684, 857
BstEII	GGTNACC	1 cut(s)	256
BstF5I	GGATG	3 cut(s)	466, 596, 915
BstH2I	RGCGCY	3 cut(s)	160, 219, 407
BstHHI	GCGC	3 cut(s)	159, 218, 406
BstKTI	GATC	3 cut(s)	122, 152, 511
BstMAI	GTCTC	1 cut(s)	785
BstMBI	GATC	3 cut(s)	119, 149, 508
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 224, 410, 650
BstNI	CCWGG	3 cut(s)	73, 457, 542
BstPI	GGTNACC	1 cut(s)	256
BstSCI	CCNGG	6 cut(s)	71, 218, 455, 540, 726, 727
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	1 cut(s)	100
BstV1I	GCAGC	3 cut(s)	557, 560, 631
BstX2I	RGATCY	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	5 cut(s)	77, 98, 816, 854, 869
BtgZI	GCGATG	1 cut(s)	404
BtsCI	GGATG	3 cut(s)	466, 596, 915
BtsIMutI	CAGTG	1 cut(s)	646
Cac8I	GCNNGC	3 cut(s)	79, 210, 214
CaiI	CAGNNNCTG	1 cut(s)	78
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	3 cut(s)	159, 218, 406
Cfr13I	GGNCC	5 cut(s)	75, 96, 97, 242, 853
Cfr9I	CCCGGG	1 cut(s)	727
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	3 cut(s)	145, 431, 691
CviAII	CATG	3 cut(s)	559, 748, 877
CviQI	GTAC	3 cut(s)	145, 431, 691
DdeI	CTNAG	3 cut(s)	189, 684, 857
DpnI	GATC	3 cut(s)	121, 151, 510
DpnII	GATC	3 cut(s)	119, 149, 508
EaeI	YGGCCR	2 cut(s)	814, 867
Ecl136II	GAGCTC	1 cut(s)	59
Eco24I	GRGCYC	3 cut(s)	61, 100, 190
Eco47I	GGWCC	1 cut(s)	242
Eco47III	AGCGCT	2 cut(s)	158, 405
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	125
Eco72I	CACGTG	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	727
Eco91I	GGTNACC	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	59
EcoO109I	RGGNCCY	2 cut(s)	75, 97
EcoO65I	GGTNACC	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	3 cut(s)	71, 455, 540
EcoT38I	GRGCYC	3 cut(s)	61, 100, 190
FaeI	CATG	3 cut(s)	562, 751, 880
FaiI	YATR	7 cut(s)	529, 535, 560, 593, 749, 813, 878
FatI	CATG	3 cut(s)	558, 747, 876
FauI	CCCGC	1 cut(s)	70
Fnu4HI	GCNGC	6 cut(s)	15, 109, 546, 549, 645, 867
FokI	GGATG	2 cut(s)	473, 583
FriOI	GRGCYC	3 cut(s)	61, 100, 190
Fsp4HI	GCNGC	6 cut(s)	15, 109, 546, 549, 645, 867
FspBI	CTAG	3 cut(s)	270, 611, 761
GlaI	GCGC	3 cut(s)	158, 217, 405
GluI	GCNGC	6 cut(s)	15, 109, 546, 549, 645, 867
GsuI	CTGGAG	1 cut(s)	679
HaeII	RGCGCY	3 cut(s)	160, 219, 407
HaeIII	GGCC	5 cut(s)	77, 98, 816, 854, 869
HapII	CCGG	6 cut(s)	117, 219, 245, 261, 728, 882
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	3 cut(s)	159, 218, 406
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	562, 751, 880
Hin6I	GCGC	3 cut(s)	157, 216, 404
HinP1I	GCGC	3 cut(s)	157, 216, 404
HpaII	CCGG	6 cut(s)	117, 219, 245, 261, 728, 882
HphI	GGTGA	2 cut(s)	268, 776
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	5 cut(s)	43, 129, 356, 669, 745
Hpy188III	TCNNGA	2 cut(s)	270, 559
Hpy8I	GTNNAC	1 cut(s)	338
Hpy99I	CGWCG	4 cut(s)	29, 71, 202, 827
HpyAV	CCTTC	2 cut(s)	568, 573
HpyCH4III	ACNGT	3 cut(s)	424, 641, 679
HpyCH4IV	ACGT	3 cut(s)	24, 180, 200
HpyCH4V	TGCA	6 cut(s)	17, 318, 446, 537, 647, 740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 224, 410, 650
HpyF3I	CTNAG	3 cut(s)	189, 684, 857
HpySE526I	ACGT	3 cut(s)	24, 180, 200
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	562, 751, 880
HspAI	GCGC	3 cut(s)	157, 216, 404
Kzo9I	GATC	3 cut(s)	119, 149, 508
LmnI	GCTCC	5 cut(s)	56, 64, 129, 164, 263
Lsp1109I	GCAGC	3 cut(s)	557, 560, 631
LweI	GCATC	5 cut(s)	26, 381, 400, 605, 749
MaeI	CTAG	3 cut(s)	270, 611, 761
MaeII	ACGT	3 cut(s)	24, 180, 200
MaeIII	GTNAC	3 cut(s)	176, 256, 872
MalI	GATC	3 cut(s)	121, 151, 510
MboI	GATC	3 cut(s)	119, 149, 508
MboII	GAAGA	7 cut(s)	386, 389, 577, 580, 583, 790, 819
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	3 cut(s)	61, 100, 190
MlsI	TGGCCA	1 cut(s)	816
MluCI	AATT	6 cut(s)	50, 288, 450, 660, 783, 845
MluNI	TGGCCA	1 cut(s)	816
MmeI	TCCRAC	3 cut(s)	107, 595, 604
Mox20I	TGGCCA	1 cut(s)	816
MscI	TGGCCA	1 cut(s)	816
MseI	TTAA	4 cut(s)	48, 87, 485, 714
MslI	CAYNNNNRTG	1 cut(s)	708
Msp20I	TGGCCA	1 cut(s)	816
MspA1I	CMGCKG	1 cut(s)	866
MspI	CCGG	6 cut(s)	117, 219, 245, 261, 728, 882
MspR9I	CCNGG	6 cut(s)	73, 220, 457, 542, 728, 729
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	3 cut(s)	73, 457, 542
MwoI	GCNNNNNNNGC	4 cut(s)	194, 224, 410, 650
NciI	CCSGG	3 cut(s)	220, 728, 729
NdeII	GATC	3 cut(s)	119, 149, 508
NlaIII	CATG	3 cut(s)	562, 751, 880
NlaIV	GGNNCC	3 cut(s)	98, 99, 243
NmuCI	GTSAC	2 cut(s)	176, 256
PagI	TCATGA	1 cut(s)	558
PkrI	GCNGC	6 cut(s)	16, 110, 547, 550, 646, 868
PmaCI	CACGTG	1 cut(s)	181
PmlI	CACGTG	1 cut(s)	181
Ppu21I	YACGTR	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	61
Psp6I	CCWGG	3 cut(s)	71, 455, 540
PspCI	CACGTG	1 cut(s)	181
PspEI	GGTNACC	1 cut(s)	256
PspGI	CCWGG	3 cut(s)	71, 455, 540
PspN4I	GGNNCC	3 cut(s)	98, 99, 243
PspOMI	GGGCCC	1 cut(s)	96
PspPI	GGNCC	5 cut(s)	75, 96, 97, 242, 853
PstNI	CAGNNNCTG	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	3 cut(s)	146, 432, 692
RsaNI	GTAC	3 cut(s)	145, 431, 691
RseI	CAYNNNNRTG	1 cut(s)	708
SacI	GAGCTC	1 cut(s)	61
SaqAI	TTAA	4 cut(s)	48, 87, 485, 714
SatI	GCNGC	6 cut(s)	15, 109, 546, 549, 645, 867
Sau3AI	GATC	3 cut(s)	119, 149, 508
Sau96I	GGNCC	5 cut(s)	75, 96, 97, 242, 853
ScaI	AGTACT	1 cut(s)	692
ScrFI	CCNGG	6 cut(s)	73, 220, 457, 542, 728, 729
SduI	GDGCHC	3 cut(s)	61, 100, 190
SfaNI	GCATC	5 cut(s)	26, 381, 400, 605, 749
SfcI	CTRYAG	1 cut(s)	637
SinI	GGWCC	1 cut(s)	242
SmaI	CCCGGG	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	708
Sse9I	AATT	6 cut(s)	50, 288, 450, 660, 783, 845
SsiI	CCGC	3 cut(s)	63, 108, 866
SspMI	CTAG	3 cut(s)	270, 611, 761
SstI	GAGCTC	1 cut(s)	61
StyD4I	CCNGG	6 cut(s)	71, 218, 455, 540, 726, 727
TaaI	ACNGT	3 cut(s)	424, 641, 679
TaiI	ACGT	3 cut(s)	27, 183, 203
TasI	AATT	6 cut(s)	50, 288, 450, 660, 783, 845
TatI	WGTACW	3 cut(s)	144, 430, 690
TauI	GCSGC	2 cut(s)	111, 869
Tru1I	TTAA	4 cut(s)	48, 87, 485, 714
Tru9I	TTAA	4 cut(s)	48, 87, 485, 714
TscAI	CASTG	1 cut(s)	646
TseFI	GTSAC	2 cut(s)	176, 256
TseI	GCWGC	4 cut(s)	14, 545, 548, 644
Tsp45I	GTSAC	2 cut(s)	176, 256
TspDTI	ATGAA	2 cut(s)	494, 578
TspGWI	ACGGA	1 cut(s)	589
TspMI	CCCGGG	1 cut(s)	727
TspRI	CASTG	1 cut(s)	646
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	3 cut(s)	50, 783, 845
XbaI	TCTAGA	1 cut(s)	269
XmaI	CCCGGG	1 cut(s)	727
XspI	CTAG	3 cut(s)	270, 611, 761
ZrmI	AGTACT	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.