Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Forward (+)

8867024 .. 8869289

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G25290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGTATCAGTGTCATTATCTCATCATAATCTCTGGCCACCGGAATCTGGATCTACGGCGTTTCGTGGTTTCGCAACCGCCGCTTCCGTACACGCCTGCCACCATGTTAGCCGTCACCTCCGCCTTGATTTCCATCTTCGCTCTTCCCTTAAGAAACTGCAGCATTTTTCTGATGATGCAAGAATGAAGTTTGCAAGATACCAAAGAGTATTTGTATTCAATGGGGCTAATTTTCTCAAGTCTAGAGTTGATATCCGGTTGTCCCAATCTTCGCCATTTGTATGTTTCTTTAATGGTGGAGAGAGTAGATTAAACCCTAGAGGTGGTGAGGAAGGATCATCGAACCCGGAGACTTCCAAGAGAAACACAGTTAACGGACGGAGATGGACCAATGTCCTTCTTGCCATTAACGTTATAATGTATATTGCACAAATTGCATCCGATGGGAAGGTCCTGACATGGGGAGCCAAGATAAACAGTTTAATCGAAAGAGGTCAGCTATGGAGACTGGCTACAGCTTCTGTTCTTCATGCGAATCCTATGCATCTCATGATAAATTGCTATTCTTTGAATTCTATTGGACCAACTGCTGAGAGTTTAGGTGGCCCAAAGAGATTTCTTGCTGTTTACTTGACATCCGCAGTTGCAAAACCCATCTTAAGAGTTCTAGGTTCAGCAATGAGCTACTGGTTCAACAAAGCGCCATCAGTTGGTGCTTCAGGTGCAATATTCGGATTGGTTGGCTCGGTAGCTGTATTTGTTATAAGACACAAACAGATGGTCAGAGGTGGCAATGAGGATCTAATGCAGATAGCTCAAATTATTGCCCTAAACATGGCAATGGGTCTAATGTCCAGACGTATAGATAACTGGGGACATATTGGTGGCTTACTTGGTGGAACCGCAATGACATGGCTTCTTGGACCACAGTGGAAGTATGAATATACAACAAGAGACGGTCGGAGAGTCTTCATGGACAGTGCTCCTATTCCTCTCCTTTTGCGGTGGAGAAATGAACAGCGACGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

343

Amino Acids

38.22

Weight (kDa)

10.79

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	164 - 302	1.3e-40	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	416, 764
AccB7I	CCANNNNNTGG	1 cut(s)	710
AciI	CCGC	6 cut(s)	78, 81, 121, 639, 903, 1003
AclI	AACGTT	1 cut(s)	411
AclWI	GGATC	3 cut(s)	58, 343, 807
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	571
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	5 cut(s)	47, 323, 460, 710, 835
AflII	CTTAAG	2 cut(s)	149, 658
AgsI	TTSAA	3 cut(s)	220, 571, 694
AluBI	AGCT	5 cut(s)	499, 518, 684, 752, 815
AluI	AGCT	5 cut(s)	499, 518, 684, 752, 815
Alw21I	GWGCWC	1 cut(s)	985
Alw26I	GTCTC	3 cut(s)	344, 499, 948
AlwI	GGATC	3 cut(s)	58, 343, 807
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	2 cut(s)	35, 604
ApeKI	GCWGC	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	571
ArsI	GACNNNNNNTTYG	2 cut(s)	765, 797
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	5 cut(s)	387, 451, 581, 605, 923
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	107, 338
AvaII	GGWCC	4 cut(s)	387, 451, 581, 923
BalI	TGGCCA	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	961
Bbv12I	GWGCWC	1 cut(s)	985
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	6 cut(s)	141, 378, 437, 662, 712, 772
BceAI	ACGGC	2 cut(s)	72, 96
BcgI	CGANNNNNNTGC	2 cut(s)	523, 557
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	3 cut(s)	344, 499, 948
BfaI	CTAG	3 cut(s)	243, 318, 668
BfmI	CTRYAG	2 cut(s)	158, 513
BfoI	RGCGCY	1 cut(s)	704
BfrI	CTTAAG	2 cut(s)	149, 658
BisI	GCNGC	2 cut(s)	81, 161
BlsI	GCNGC	2 cut(s)	82, 162
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	4 cut(s)	387, 451, 581, 923
BmgT120I	GGNCC	5 cut(s)	387, 451, 581, 605, 923
BmiI	GGNNCC	2 cut(s)	466, 901
BmrFI	CCNGG	1 cut(s)	347
BmrI	ACTGGG	1 cut(s)	880
BmsI	GCATC	3 cut(s)	166, 446, 553
BmuI	ACTGGG	1 cut(s)	880
BoxI	GACNNNNGTC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	961
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	132
BsaWI	WCCGGW	2 cut(s)	40, 255
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 323, 460, 710, 835
Bse1I	ACTGG	3 cut(s)	513, 692, 875
Bse3DI	GCAATG	4 cut(s)	684, 799, 846, 912
Bse8I	GATNNNNATC	1 cut(s)	132
BseGI	GGATG	2 cut(s)	437, 635
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	5 cut(s)	47, 323, 460, 710, 835
BseMI	GCAATG	4 cut(s)	684, 799, 846, 912
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	3 cut(s)	513, 692, 875
BseXI	GCAGC	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	961
BshFI	GGCC	2 cut(s)	37, 606
BsiEI	CGRYCG	1 cut(s)	961
BsiHKAI	GWGCWC	1 cut(s)	985
BsiSI	CCGG	3 cut(s)	41, 256, 347
BslFI	GGGAC	2 cut(s)	247, 888
BslI	CCNNNNNNNGG	5 cut(s)	47, 323, 460, 710, 835
BsmAI	GTCTC	3 cut(s)	344, 499, 948
BsmBI	CGTCTC	1 cut(s)	948
BsmFI	GGGAC	2 cut(s)	247, 888
BsnI	GGCC	2 cut(s)	37, 606
Bsp1286I	GDGCHC	1 cut(s)	985
Bsp143I	GATC	3 cut(s)	50, 335, 799
BspACI	CCGC	6 cut(s)	78, 81, 121, 639, 903, 1003
BspANI	GGCC	2 cut(s)	37, 606
BspCNI	CTCAG	1 cut(s)	583
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	2 cut(s)	466, 901
BspMAI	CTGCAG	1 cut(s)	162
BspPI	GGATC	3 cut(s)	58, 343, 807
BspQI	GCTCTTC	1 cut(s)	148
BspTI	CTTAAG	2 cut(s)	149, 658
BsrDI	GCAATG	4 cut(s)	684, 799, 846, 912
BsrI	ACTGG	3 cut(s)	513, 692, 875
BssMI	GATC	3 cut(s)	50, 335, 799
Bst4CI	ACNGT	5 cut(s)	370, 479, 930, 959, 980
Bst6I	CTCTTC	1 cut(s)	148
BstAFI	CTTAAG	2 cut(s)	149, 658
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	591
BstF5I	GGATG	2 cut(s)	437, 635
BstH2I	RGCGCY	1 cut(s)	704
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	3 cut(s)	53, 338, 802
BstMAI	GTCTC	3 cut(s)	344, 499, 948
BstMBI	GATC	3 cut(s)	50, 335, 799
BstMCI	CGRYCG	1 cut(s)	961
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 434, 722
BstPAI	GACNNNNGTC	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	2 cut(s)	158, 513
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	961
BstX2I	RGATCY	2 cut(s)	50, 799
BstYI	RGATCY	2 cut(s)	50, 799
BsuRI	GGCC	2 cut(s)	37, 606
BtsCI	GGATG	2 cut(s)	437, 635
BtsIMutI	CAGTG	3 cut(s)	15, 935, 985
Cac8I	GCNNGC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	521
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	1 cut(s)	703
Cfr13I	GGNCC	5 cut(s)	387, 451, 581, 605, 923
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	7 cut(s)	104, 459, 530, 550, 835, 912, 973
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	3 cut(s)	52, 337, 801
DpnII	GATC	3 cut(s)	50, 335, 799
EaeI	YGGCCR	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	4 cut(s)	387, 451, 581, 923
Eco57I	CTGAAG	1 cut(s)	702
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	571
EcoRV	GATATC	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	546
Esp3I	CGTCTC	1 cut(s)	948
FaeI	CATG	7 cut(s)	107, 462, 533, 553, 838, 915, 976
FaqI	GGGAC	2 cut(s)	247, 888
FatI	CATG	7 cut(s)	103, 458, 529, 549, 834, 911, 972
Fnu4HI	GCNGC	2 cut(s)	81, 161
FokI	GGATG	2 cut(s)	424, 622
Fsp4HI	GCNGC	2 cut(s)	81, 161
FspBI	CTAG	3 cut(s)	243, 318, 668
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	2 cut(s)	81, 161
HaeII	RGCGCY	1 cut(s)	704
HaeIII	GGCC	2 cut(s)	37, 606
HapII	CCGG	3 cut(s)	41, 256, 347
HhaI	GCGC	1 cut(s)	703
Hin1II	CATG	7 cut(s)	107, 462, 533, 553, 838, 915, 976
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	3 cut(s)	44, 535, 966
HpaI	GTTAAC	1 cut(s)	373
HpaII	CCGG	3 cut(s)	41, 256, 347
HphI	GGTGA	2 cut(s)	107, 338
Hpy166II	GTNNAC	3 cut(s)	91, 373, 628
Hpy188I	TCNGA	5 cut(s)	172, 442, 734, 785, 963
Hpy188III	TCNNGA	5 cut(s)	48, 243, 454, 550, 855
Hpy8I	GTNNAC	3 cut(s)	91, 373, 628
Hpy99I	CGWCG	1 cut(s)	1026
HpyAV	CCTTC	3 cut(s)	326, 407, 442
HpyCH4III	ACNGT	5 cut(s)	370, 479, 930, 959, 980
HpyCH4IV	ACGT	2 cut(s)	411, 859
HpyCH4V	TGCA	9 cut(s)	160, 179, 194, 428, 437, 544, 647, 725, 808
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 434, 722
HpyF3I	CTNAG	1 cut(s)	591
HpySE526I	ACGT	2 cut(s)	411, 859
Hsp92II	CATG	7 cut(s)	107, 462, 533, 553, 838, 915, 976
HspAI	GCGC	1 cut(s)	701
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	50, 335, 799
LguI	GCTCTTC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	464, 988
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	3 cut(s)	166, 446, 553
MaeI	CTAG	3 cut(s)	243, 318, 668
MaeII	ACGT	2 cut(s)	411, 859
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	3 cut(s)	52, 337, 801
MboI	GATC	3 cut(s)	50, 335, 799
MboII	GAAGA	5 cut(s)	128, 135, 261, 518, 961
MflI	RGATCY	2 cut(s)	50, 799
MhlI	GDGCHC	1 cut(s)	985
MlsI	TGGCCA	1 cut(s)	37
MluCI	AATT	5 cut(s)	229, 432, 556, 571, 819
MluNI	TGGCCA	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	975
MmeI	TCCRAC	1 cut(s)	941
MnlI	CCTC	7 cut(s)	128, 314, 322, 485, 779, 790, 1002
Mox20I	TGGCCA	1 cut(s)	37
Mph1103I	ATGCAT	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	37
MseI	TTAA	7 cut(s)	150, 291, 311, 372, 408, 482, 659
MslI	CAYNNNNRTG	3 cut(s)	280, 839, 882
Msp20I	TGGCCA	1 cut(s)	37
MspCI	CTTAAG	2 cut(s)	149, 658
MspI	CCGG	3 cut(s)	41, 256, 347
MspR9I	CCNGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	3 cut(s)	80, 434, 722
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	3 cut(s)	50, 335, 799
NlaIII	CATG	7 cut(s)	107, 462, 533, 553, 838, 915, 976
NlaIV	GGNNCC	2 cut(s)	466, 901
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	546
PagI	TCATGA	1 cut(s)	549
PciSI	GCTCTTC	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	44, 535
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	2 cut(s)	82, 162
PleI	GAGTC	1 cut(s)	974
PpsI	GAGTC	1 cut(s)	974
PpuMI	RGGWCCY	1 cut(s)	451
PshAI	GACNNNNGTC	1 cut(s)	392
PsiI	TTATAA	2 cut(s)	416, 764
Psp1406I	AACGTT	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	466, 901
PspPI	GGNCC	5 cut(s)	387, 451, 581, 605, 923
PspPPI	RGGWCCY	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	2 cut(s)	50, 799
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	3 cut(s)	280, 839, 882
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	7 cut(s)	150, 291, 311, 372, 408, 482, 659
SatI	GCNGC	2 cut(s)	81, 161
Sau3AI	GATC	3 cut(s)	50, 335, 799
Sau96I	GGNCC	5 cut(s)	387, 451, 581, 605, 923
SchI	GAGTC	1 cut(s)	975
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	985
SfaNI	GCATC	3 cut(s)	166, 446, 553
SfcI	CTRYAG	2 cut(s)	158, 513
SinI	GGWCC	4 cut(s)	387, 451, 581, 923
SmiMI	CAYNNNNRTG	3 cut(s)	280, 839, 882
SmlI	CTYRAG	3 cut(s)	149, 236, 658
SmoI	CTYRAG	3 cut(s)	149, 236, 658
Sse9I	AATT	5 cut(s)	229, 432, 556, 571, 819
SsiI	CCGC	6 cut(s)	78, 81, 121, 639, 903, 1003
SspI	AATATT	1 cut(s)	729
SspMI	CTAG	3 cut(s)	243, 318, 668
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	5 cut(s)	370, 479, 930, 959, 980
TaiI	ACGT	2 cut(s)	414, 862
TaqI	TCGA	2 cut(s)	341, 486
TasI	AATT	5 cut(s)	229, 432, 556, 571, 819
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	44, 535
Tru1I	TTAA	7 cut(s)	150, 291, 311, 372, 408, 482, 659
Tru9I	TTAA	7 cut(s)	150, 291, 311, 372, 408, 482, 659
TscAI	CASTG	3 cut(s)	15, 935, 985
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	5 cut(s)	200, 518, 954, 961, 1029
TspGWI	ACGGA	3 cut(s)	76, 390, 394
TspRI	CASTG	3 cut(s)	15, 935, 985
Van91I	CCANNNNNTGG	1 cut(s)	710
Vha464I	CTTAAG	2 cut(s)	149, 658
VpaK11BI	GGWCC	4 cut(s)	387, 451, 581, 923
XapI	RAATTY	1 cut(s)	571
XbaI	TCTAGA	1 cut(s)	242
XspI	CTAG	3 cut(s)	243, 318, 668
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.