Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Reverse (-)

20501540 .. 20505299

Gene Structure 3760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGATAAGTGTAGGCGAGCTCCAATCCCTCTGGTTCTCTTTACCCAAACTGGGTCGACTCTCTGCAAGGCCCCTTCATCTCCTCGCCTCTGCCACTTCTCTCCGCCTCGCTCAACACTTCCACTTTGATTCTCTTCTCCGCTCCTACTTTCAGAAACAACTTGCTCATATCAGTCCCTTGCATAAGTTGAAGTCATTGTCAACTCCTACTTCAATTTGCTTTAGTCTTTTTGATGGAAGAGACAACAGCAATGATGTTACAAATAAAGACATACCCAACTCTAACATGTCCACTAGAAACTTCTTCAGTGGAAGACAATGGACAAATCTTCTGCTTGCCGTTAATATCATAGTTTATATTGCACAAGTTGGAACACAAAATGACTTGACCCTATGGGGTGCCAAGATTAACAGGCTCATCGATAAAGGGCAATTGTGGAGGCTTGTCACAAGTGCCTTTTTGCATGCAAATGTTGGCCACCTCCTGGTCAATTGCTATTCTTTGAATAATGTTGGCCCTACCATGGAGAAGCTCAGTGGTTCAAAGCGATTTCTTGCGATTTACTTCACCTCTGCAATTGCAAGTTCCGCAATGAGTTATTGGTGCAGCCAGGCACCTGCGGTGGGTGCATCAGGAGCAGTCTTCGGCTTAGTGGGATCTCTTGCAGTCTTTGTCATGAGGCATAAAGCTCTGGTTGGGGGTGGCAAAGAAGATCTAAAGCACATAGCCTATGTAATTGTCCTAAATATGGGTATTGGGCTGTTCTCCAAAGGCATTGATAGCTGGGGACATTTGGGAGGCTTGCTTGGTGGAGCTGCCACATCATGGCTTCTAGGACCTGCCTGGAAGTATGAATTTTCATCCACTGATAGACGAAGGATTTTTACTGACAAGGCTCCTATTTTCTACCTCATCAACCGAGAGCCTAGATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

312

Amino Acids

34.29

Weight (kDa)

9.97

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	142 - 279	2.2e-37	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	625
Acc36I	ACCTGC	2 cut(s)	625, 847
AccB1I	GGYRCC	2 cut(s)	398, 613
AccB7I	CCANNNNNTGG	2 cut(s)	484, 825
AccBSI	CCGCTC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	4 cut(s)	103, 139, 588, 620
AclWI	GGATC	2 cut(s)	664, 924
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	854
AcuI	CTGAAG	1 cut(s)	289
AfiI	CCNNNNNNNGG	6 cut(s)	50, 484, 523, 623, 748, 825
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	4 cut(s)	190, 213, 505, 543
AjnI	CCWGG	3 cut(s)	483, 609, 842
AluBI	AGCT	5 cut(s)	19, 532, 689, 783, 815
AluI	AGCT	5 cut(s)	19, 532, 689, 783, 815
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	2 cut(s)	664, 924
AoxI	GGCC	3 cut(s)	68, 475, 514
ApeKI	GCWGC	2 cut(s)	606, 815
ApoI	RAATTY	1 cut(s)	854
AspS9I	GGNCC	3 cut(s)	69, 515, 836
AsuHPI	GGTGA	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	836
BalI	TGGCCA	1 cut(s)	477
BanI	GGYRCC	2 cut(s)	398, 613
BanII	GRGCYC	1 cut(s)	21
BarI	GAAGNNNNNNTAC	2 cut(s)	868, 900
BbsI	GAAGAC	2 cut(s)	319, 634
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	618, 802
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	3 cut(s)	485, 611, 844
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	4 cut(s)	294, 833, 927, 934
BfuAI	ACCTGC	2 cut(s)	625, 847
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	2 cut(s)	607, 816
BlsI	GCNGC	2 cut(s)	608, 817
Bme1390I	CCNGG	3 cut(s)	485, 611, 844
Bme18I	GGWCC	1 cut(s)	836
BmgT120I	GGNCC	3 cut(s)	69, 515, 836
BmiI	GGNNCC	4 cut(s)	71, 400, 615, 897
BmrFI	CCNGG	3 cut(s)	485, 611, 844
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	638
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	2 cut(s)	319, 634
Bsa29I	ATCGAT	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 484, 523, 623, 748, 825
Bse1I	ACTGG	1 cut(s)	54
Bse3DI	GCAATG	2 cut(s)	256, 597
BseBI	CCWGG	3 cut(s)	485, 611, 844
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	1 cut(s)	860
BseLI	CCNNNNNNNGG	6 cut(s)	50, 484, 523, 623, 748, 825
BseMI	GCAATG	2 cut(s)	256, 597
BseMII	CTCAG	1 cut(s)	547
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	618, 802
BseYI	CCCAGC	1 cut(s)	783
BsgI	GTGCAG	1 cut(s)	625
BshFI	GGCC	3 cut(s)	70, 477, 516
BshNI	GGYRCC	2 cut(s)	398, 613
BshVI	ATCGAT	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	21
BslFI	GGGAC	2 cut(s)	159, 801
BslI	CCNNNNNNNGG	6 cut(s)	50, 484, 523, 623, 748, 825
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	2 cut(s)	159, 801
BsnI	GGCC	3 cut(s)	70, 477, 516
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	656, 712, 929
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	4 cut(s)	103, 139, 588, 620
BspANI	GGCC	3 cut(s)	70, 477, 516
BspCNI	CTCAG	1 cut(s)	546
BspDI	ATCGAT	1 cut(s)	420
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	4 cut(s)	71, 400, 615, 897
BspMI	ACCTGC	2 cut(s)	625, 847
BspPI	GGATC	2 cut(s)	664, 924
BspT107I	GGYRCC	2 cut(s)	398, 613
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	2 cut(s)	256, 597
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	3 cut(s)	656, 712, 929
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	3 cut(s)	485, 611, 844
Bst6I	CTCTTC	2 cut(s)	138, 232
BstC8I	GCNNGC	4 cut(s)	17, 336, 465, 803
BstDEI	CTNAG	2 cut(s)	533, 649
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	860
BstKTI	GATC	3 cut(s)	659, 715, 932
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	3 cut(s)	656, 712, 929
BstMWI	GCNNNNNNNGC	4 cut(s)	587, 626, 635, 780
BstNI	CCWGG	3 cut(s)	485, 611, 844
BstNSI	RCATGY	2 cut(s)	289, 467
BstSCI	CCNGG	3 cut(s)	483, 609, 842
BstV1I	GCAGC	2 cut(s)	618, 802
BstV2I	GAAGAC	2 cut(s)	319, 634
BstX2I	RGATCY	3 cut(s)	656, 712, 929
BstYI	RGATCY	3 cut(s)	656, 712, 929
Bsu15I	ATCGAT	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	70, 477, 516
BsuTUI	ATCGAT	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	1 cut(s)	860
BtsIMutI	CAGTG	3 cut(s)	313, 541, 864
BveI	ACCTGC	2 cut(s)	625, 847
Cac8I	GCNNGC	4 cut(s)	17, 336, 465, 803
CciI	TCATGA	1 cut(s)	675
Cfr13I	GGNCC	3 cut(s)	69, 515, 836
ClaI	ATCGAT	1 cut(s)	420
CviAII	CATG	5 cut(s)	286, 464, 523, 676, 825
DdeI	CTNAG	2 cut(s)	533, 649
DpnI	GATC	3 cut(s)	658, 714, 931
DpnII	GATC	3 cut(s)	656, 712, 929
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	2 cut(s)	138, 232
EarI	CTCTTC	2 cut(s)	138, 232
EciI	GGCGGA	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	836
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	19
EcoO109I	RGGNCCY	2 cut(s)	69, 836
EcoRII	CCWGG	3 cut(s)	483, 609, 842
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	5 cut(s)	289, 467, 526, 679, 828
FaqI	GGGAC	2 cut(s)	159, 801
FatI	CATG	5 cut(s)	285, 463, 522, 675, 824
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	607, 816
FokI	GGATG	1 cut(s)	847
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	2 cut(s)	607, 816
FspBI	CTAG	4 cut(s)	294, 833, 927, 934
GluI	GCNGC	2 cut(s)	607, 816
GsaI	CCCAGC	1 cut(s)	787
HaeIII	GGCC	3 cut(s)	70, 477, 516
Hin1II	CATG	5 cut(s)	289, 467, 526, 679, 828
HincII	GTYRAC	2 cut(s)	56, 201
HindII	GTYRAC	2 cut(s)	56, 201
HinfI	GANTC	2 cut(s)	57, 128
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	3 cut(s)	56, 201, 291
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	2 cut(s)	633, 676
Hpy8I	GTNNAC	3 cut(s)	56, 201, 291
HpyAV	CCTTC	2 cut(s)	83, 870
HpyF10VI	GCNNNNNNNGC	4 cut(s)	587, 626, 635, 780
HpyF3I	CTNAG	2 cut(s)	533, 649
Hsp92II	CATG	5 cut(s)	289, 467, 526, 679, 828
Kzo9I	GATC	3 cut(s)	656, 712, 929
LmnI	GCTCC	5 cut(s)	24, 146, 635, 812, 901
Lsp1109I	GCAGC	2 cut(s)	618, 802
LweI	GCATC	1 cut(s)	638
MaeI	CTAG	4 cut(s)	294, 833, 927, 934
MaeIII	GTNAC	2 cut(s)	256, 445
MalI	GATC	3 cut(s)	658, 714, 931
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	3 cut(s)	656, 712, 929
MboII	GAAGA	7 cut(s)	125, 249, 295, 320, 324, 634, 722
MfeI	CAATTG	3 cut(s)	431, 490, 576
MflI	RGATCY	3 cut(s)	656, 712, 929
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	6 cut(s)	213, 431, 490, 576, 735, 854
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	349
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	2 cut(s)	342, 408
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	1 cut(s)	477
MspR9I	CCNGG	3 cut(s)	485, 611, 844
MunI	CAATTG	3 cut(s)	431, 490, 576
MvaI	CCWGG	3 cut(s)	485, 611, 844
MwoI	GCNNNNNNNGC	4 cut(s)	587, 626, 635, 780
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	3 cut(s)	656, 712, 929
NlaIII	CATG	5 cut(s)	289, 467, 526, 679, 828
NlaIV	GGNNCC	4 cut(s)	71, 400, 615, 897
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	2 cut(s)	289, 467
PaeI	GCATGC	1 cut(s)	467
PagI	TCATGA	1 cut(s)	675
PaqCI	CACCTGC	1 cut(s)	625
PciI	ACATGT	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	128
PflMI	CCANNNNNTGG	2 cut(s)	484, 825
PkrI	GCNGC	2 cut(s)	608, 817
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PpuMI	RGGWCCY	1 cut(s)	836
PscI	ACATGT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	21
Psp5II	RGGWCCY	1 cut(s)	836
Psp6I	CCWGG	3 cut(s)	483, 609, 842
PspFI	CCCAGC	1 cut(s)	783
PspGI	CCWGG	3 cut(s)	483, 609, 842
PspN4I	GGNNCC	4 cut(s)	71, 400, 615, 897
PspPI	GGNCC	3 cut(s)	69, 515, 836
PspPPI	RGGWCCY	1 cut(s)	836
PsuI	RGATCY	3 cut(s)	656, 712, 929
RseI	CAYNNNNRTG	1 cut(s)	468
SacI	GAGCTC	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	342, 408
SatI	GCNGC	2 cut(s)	607, 816
Sau3AI	GATC	3 cut(s)	656, 712, 929
Sau96I	GGNCC	3 cut(s)	69, 515, 836
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	3 cut(s)	485, 611, 844
SduI	GDGCHC	1 cut(s)	21
SfaNI	GCATC	1 cut(s)	638
SinI	GGWCC	1 cut(s)	836
SmiMI	CAYNNNNRTG	1 cut(s)	468
SphI	GCATGC	1 cut(s)	467
Sse9I	AATT	6 cut(s)	213, 431, 490, 576, 735, 854
SsiI	CCGC	4 cut(s)	103, 139, 588, 620
SspMI	CTAG	4 cut(s)	294, 833, 927, 934
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	3 cut(s)	483, 609, 842
StyI	CCWWGG	1 cut(s)	522
TaqI	TCGA	2 cut(s)	55, 420
TasI	AATT	6 cut(s)	213, 431, 490, 576, 735, 854
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	342, 408
Tru9I	TTAA	2 cut(s)	342, 408
TscAI	CASTG	3 cut(s)	313, 541, 871
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	2 cut(s)	606, 815
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	3 cut(s)	65, 849, 867
TspRI	CASTG	3 cut(s)	313, 541, 871
Van91I	CCANNNNNTGG	2 cut(s)	484, 825
VpaK11BI	GGWCC	1 cut(s)	836
XapI	RAATTY	1 cut(s)	854
XceI	RCATGY	2 cut(s)	289, 467
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	4 cut(s)	294, 833, 927, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.