Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Forward (+)

18548414 .. 18562764

Gene Structure 14351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0210400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCTTTGCAAATCGAAGAACAATACGTTGAGTCACTCTCCTCCATGGGACACAAACTAAGTGTCAAGAACTTCATTTGGTCCAAGGAAGAATGGCCAGCAATAAATCATGATGAGTTTACTGTTTCACATGACATTCCTGCAATAAGTCTCCGAGAGATTTCAGATGGGAGAAGAAACCCTAATTATGAGAAGGTCTGCAAGGTCATGGTGAATGCTTGTGAGAAATGGGGGTTCTTCAAGTTAGTGGATCATGGGGTTGCTTTGGAGATCATAGAGAATTTCAAAGGGAGTATGAATGCCCTTTTTGATCTTCCAATGGAGCAGAAGCTGAAGGGTGTTAGATCAGCTAGTTTACCATTAGGTTACTGTGCAACAAATCCTGATTATGGGAAGAATTTGCCTTGGGCAGAGATCTTACAGTTGCTCCAGTCACCACAAATGGTGGTTGGATTTGCAACAAAGGTTTTTGGTGATCAACATCAGCCATTTAGTGATGCAATGATTGGTTACTTGAATGCATTGGATAATCTGGGAATGACTATTTTGGAGATGCTAGCTCATGGATTGGGTCTTCCAGACAACTTCTTCACAAAGAACTTTGAAGCAAAAGAGGCTACAATGATCAGAGTCAACAGATATCCTCCTTGTCCTCTTCCAGAAAAATGTCTTGGGCTGGGAAGCCATTCAGACCCTCATACCTTAACCATATTGTTACAAGATGATGTTGGTGGGCTTCAAGTTCTTATGAATGACAACAAATGGATTGGCATCCGTCCTGTTCAGAATTCTTTCATTATCAACATTGGTGACACCCTTGAGGCTTGGACTAATGGGAGGCTGAAGAGTGTTGTGCATAGAGCAGTTGTCAACAAGGAGAAGAACAGGCTATCGGCAGCTTATTTCATGAGCCCCTCTGATTGTGCCACAATTGAGTGCCCTCCCGAGCTCATGGACCCAATAATCAACCCTAGAAAGATTCCACTTTCTTTCCAAATTAGGGATTTAGATTTTCTTCTTTGTCTGATGAAGGAAGGACTGATGAAGGAGATGCAGAGGTCGAAGGAGGGACTGATGAAGAAGATGCAGAGGAAGAAGACGGAGGTTTCAAAGTTGGGAAAGTTGAAATGTAGGGATGAACATGATTCTGTACAAGATGTAAAAGCAGATGACCTACGGCAGATGCTTCTAGCCATGACAGAGGAGCGCTTCTCCGGTGCGGACGTCCGCACTTTTTGCTTAGGTGCGGATTTCCGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

420

Amino Acids

47.57

Weight (kDa)

6.24

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	46 - 145	4.3e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	208 - 305	3.3e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1227
AciI	CCGC	3 cut(s)	1220, 1228, 1247
AclWI	GGATC	1 cut(s)	258
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	3 cut(s)	280, 397, 787
AcuI	CTGAAG	2 cut(s)	353, 863
AcyI	GRCGYC	1 cut(s)	1224
AfaI	GTAC	1 cut(s)	1152
AfeI	AGCGCT	1 cut(s)	1208
AfiI	CCNNNNNNNGG	2 cut(s)	389, 1000
AgsI	TTSAA	7 cut(s)	241, 286, 517, 605, 740, 1110, 1126
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AluBI	AGCT	5 cut(s)	331, 350, 560, 899, 949
AluI	AGCT	5 cut(s)	331, 350, 560, 899, 949
Alw21I	GWGCWC	1 cut(s)	951
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	258
AlwNI	CAGNNNCTG	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	944
Aor51HI	AGCGCT	1 cut(s)	1208
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	896
ApoI	RAATTY	3 cut(s)	280, 397, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
Asp700I	GAANNNNTTC	2 cut(s)	685, 791
AspLEI	GCGC	1 cut(s)	1209
AspS9I	GGNCC	2 cut(s)	81, 955
AsuHPI	GGTGA	4 cut(s)	223, 426, 485, 821
AsuNHI	GCTAGC	1 cut(s)	556
AvaI	CYCGRG	1 cut(s)	944
AvaII	GGWCC	2 cut(s)	81, 955
BaeGI	GKGCMC	1 cut(s)	941
BalI	TGGCCA	1 cut(s)	97
BanII	GRGCYC	2 cut(s)	914, 951
BbsI	GAAGAC	2 cut(s)	566, 1103
Bbv12I	GWGCWC	1 cut(s)	951
BbvI	GCAGC	1 cut(s)	908
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	1193
BclI	TGATCA	2 cut(s)	475, 624
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	4 cut(s)	351, 557, 972, 1190
BfoI	RGCGCY	1 cut(s)	1210
BglII	AGATCT	1 cut(s)	414
BisI	GCNGC	1 cut(s)	897
BlsI	GCNGC	1 cut(s)	898
Bme18I	GGWCC	2 cut(s)	81, 955
BmeT110I	CYCGRG	1 cut(s)	944
BmgT120I	GGNCC	2 cut(s)	81, 955
BmiI	GGNNCC	1 cut(s)	957
BmsI	GCATC	6 cut(s)	487, 543, 780, 1041, 1074, 1173
BmtI	GCTAGC	1 cut(s)	560
BpiI	GAAGAC	2 cut(s)	566, 1103
BplI	GAGNNNNNCTC	4 cut(s)	23, 55, 1196, 1228
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	1240
BpuEI	CTTGAG	1 cut(s)	839
BsaBI	GATNNNNATC	2 cut(s)	480, 770
BsaHI	GRCGYC	1 cut(s)	1224
BsaJI	CCNNGG	3 cut(s)	45, 84, 404
BsaWI	WCCGGW	2 cut(s)	1214, 1254
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 1000
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	507
Bse8I	GATNNNNATC	2 cut(s)	480, 770
BseDI	CCNNGG	3 cut(s)	45, 84, 404
BseGI	GGATG	2 cut(s)	771, 1141
BseJI	GATNNNNATC	2 cut(s)	480, 770
BseLI	CCNNNNNNNGG	2 cut(s)	389, 1000
BseMI	GCAATG	1 cut(s)	507
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	2 cut(s)	31, 1217
BseSI	GKGCMC	1 cut(s)	941
BseXI	GCAGC	1 cut(s)	908
BseYI	CCCAGC	1 cut(s)	676
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	951
BsiHKCI	CYCGRG	1 cut(s)	944
BsiSI	CCGG	2 cut(s)	1215, 1255
BslFI	GGGAC	2 cut(s)	63, 1083
BslI	CCNNNNNNNGG	2 cut(s)	389, 1000
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	63, 1083
BsmI	GAATGC	3 cut(s)	220, 304, 523
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	944
Bsp1286I	GDGCHC	3 cut(s)	914, 941, 951
Bsp1407I	TGTACA	1 cut(s)	1150
Bsp143I	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	3 cut(s)	1220, 1228, 1247
BspANI	GGCC	1 cut(s)	97
BspHI	TCATGA	2 cut(s)	109, 906
BspLI	GGNNCC	1 cut(s)	957
BspOI	GCTAGC	1 cut(s)	560
BspPI	GGATC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	507
BsrGI	TGTACA	1 cut(s)	1150
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	3 cut(s)	45, 84, 404
BssMI	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
BssNI	GRCGYC	1 cut(s)	1224
BssT1I	CCWWGG	3 cut(s)	45, 84, 404
Bst4CI	ACNGT	3 cut(s)	124, 371, 423
Bst6I	CTCTTC	2 cut(s)	660, 839
BstACI	GRCGYC	1 cut(s)	1224
BstAPI	GCANNNNNTGC	1 cut(s)	1236
BstAUI	TGTACA	1 cut(s)	1150
BstC8I	GCNNGC	2 cut(s)	99, 558
BstDEI	CTNAG	2 cut(s)	59, 1240
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	771, 1141
BstH2I	RGCGCY	1 cut(s)	1210
BstHHI	GCGC	1 cut(s)	1209
BstKTI	GATC	7 cut(s)	253, 273, 313, 347, 417, 478, 627
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	614, 1236
BstSLI	GKGCMC	1 cut(s)	941
BstV1I	GCAGC	1 cut(s)	908
BstV2I	GAAGAC	2 cut(s)	566, 1103
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	771, 1141
Cac8I	GCNNGC	2 cut(s)	99, 558
CaiI	CAGNNNCTG	1 cut(s)	331
CciI	TCATGA	2 cut(s)	109, 906
CfoI	GCGC	1 cut(s)	1209
Cfr13I	GGNCC	2 cut(s)	81, 955
Csp6I	GTAC	1 cut(s)	1151
CviQI	GTAC	1 cut(s)	1151
DdeI	CTNAG	2 cut(s)	59, 1240
DpnI	GATC	7 cut(s)	252, 272, 312, 346, 416, 477, 626
DpnII	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	660, 839
EarI	CTCTTC	2 cut(s)	660, 839
Ecl136II	GAGCTC	1 cut(s)	949
Eco130I	CCWWGG	3 cut(s)	45, 84, 404
Eco24I	GRGCYC	2 cut(s)	914, 951
Eco32I	GATATC	1 cut(s)	641
Eco47I	GGWCC	2 cut(s)	81, 955
Eco47III	AGCGCT	1 cut(s)	1208
Eco53kI	GAGCTC	1 cut(s)	949
Eco57I	CTGAAG	2 cut(s)	353, 863
Eco88I	CYCGRG	1 cut(s)	944
EcoICRI	GAGCTC	1 cut(s)	949
EcoRI	GAATTC	1 cut(s)	787
EcoRV	GATATC	1 cut(s)	641
EcoT14I	CCWWGG	3 cut(s)	45, 84, 404
EcoT22I	ATGCAT	1 cut(s)	523
EcoT38I	GRGCYC	2 cut(s)	914, 951
ErhI	CCWWGG	3 cut(s)	45, 84, 404
FaqI	GGGAC	2 cut(s)	63, 1083
FbaI	TGATCA	2 cut(s)	475, 624
Fnu4HI	GCNGC	1 cut(s)	897
FokI	GGATG	2 cut(s)	758, 1148
FriOI	GRGCYC	2 cut(s)	914, 951
Fsp4HI	GCNGC	1 cut(s)	897
FspBI	CTAG	4 cut(s)	351, 557, 972, 1190
GlaI	GCGC	1 cut(s)	1208
GluI	GCNGC	1 cut(s)	897
GsaI	CCCAGC	1 cut(s)	680
GsuI	CTGGAG	1 cut(s)	413
HaeII	RGCGCY	1 cut(s)	1210
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	1215, 1255
HhaI	GCGC	1 cut(s)	1209
Hin1I	GRCGYC	1 cut(s)	1224
Hin6I	GCGC	1 cut(s)	1207
HinP1I	GCGC	1 cut(s)	1207
HincII	GTYRAC	2 cut(s)	634, 871
HindII	GTYRAC	2 cut(s)	634, 871
HinfI	GANTC	4 cut(s)	32, 630, 979, 1145
HpaII	CCGG	2 cut(s)	1215, 1255
HphI	GGTGA	4 cut(s)	223, 426, 485, 821
Hpy166II	GTNNAC	4 cut(s)	120, 356, 634, 871
Hpy188I	TCNGA	7 cut(s)	155, 166, 629, 691, 786, 919, 1026
Hpy188III	TCNNGA	7 cut(s)	67, 110, 383, 578, 659, 907, 944
Hpy8I	GTNNAC	4 cut(s)	120, 356, 634, 871
HpyAV	CCTTC	6 cut(s)	187, 328, 1024, 1028, 1039, 1057
HpyCH4III	ACNGT	3 cut(s)	124, 371, 423
HpyCH4IV	ACGT	2 cut(s)	27, 1224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	614, 1236
HpyF3I	CTNAG	2 cut(s)	59, 1240
HpySE526I	ACGT	2 cut(s)	27, 1224
Hsp92I	GRCGYC	1 cut(s)	1224
HspAI	GCGC	1 cut(s)	1207
Ksp22I	TGATCA	2 cut(s)	475, 624
Kzo9I	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
LmnI	GCTCC	3 cut(s)	322, 432, 1204
Lsp1109I	GCAGC	1 cut(s)	908
LweI	GCATC	6 cut(s)	487, 543, 780, 1041, 1074, 1173
MaeI	CTAG	4 cut(s)	351, 557, 972, 1190
MaeII	ACGT	2 cut(s)	27, 1224
MaeIII	GTNAC	6 cut(s)	33, 365, 432, 509, 714, 809
MalI	GATC	7 cut(s)	252, 272, 312, 346, 416, 477, 626
MboI	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	3 cut(s)	914, 941, 951
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	6 cut(s)	184, 280, 397, 787, 930, 996
MluNI	TGGCCA	1 cut(s)	97
MlyI	GAGTC	2 cut(s)	41, 639
MmeI	TCCRAC	1 cut(s)	430
Mox20I	TGGCCA	1 cut(s)	97
Mph1103I	ATGCAT	1 cut(s)	523
MroXI	GAANNNNTTC	2 cut(s)	685, 791
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	1 cut(s)	704
Msp20I	TGGCCA	1 cut(s)	97
MspI	CCGG	2 cut(s)	1215, 1255
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	3 cut(s)	220, 304, 523
MwoI	GCNNNNNNNGC	2 cut(s)	614, 1236
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
NheI	GCTAGC	1 cut(s)	556
NlaIV	GGNNCC	1 cut(s)	957
NmuCI	GTSAC	3 cut(s)	33, 432, 809
NsiI	ATGCAT	1 cut(s)	523
PagI	TCATGA	2 cut(s)	109, 906
PctI	GAATGC	3 cut(s)	220, 304, 523
PdmI	GAANNNNTTC	2 cut(s)	685, 791
PfeI	GAWTC	2 cut(s)	979, 1145
PkrI	GCNGC	1 cut(s)	898
PleI	GAGTC	2 cut(s)	40, 638
PpsI	GAGTC	2 cut(s)	40, 638
Psp124BI	GAGCTC	1 cut(s)	951
PspFI	CCCAGC	1 cut(s)	676
PspN4I	GGNNCC	1 cut(s)	957
PspPI	GGNCC	2 cut(s)	81, 955
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	414
RsaI	GTAC	1 cut(s)	1152
RsaNI	GTAC	1 cut(s)	1151
SacI	GAGCTC	1 cut(s)	951
SaqAI	TTAA	1 cut(s)	704
SatI	GCNGC	1 cut(s)	897
Sau3AI	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
Sau96I	GGNCC	2 cut(s)	81, 955
SchI	GAGTC	2 cut(s)	41, 639
SduI	GDGCHC	3 cut(s)	914, 941, 951
SfaNI	GCATC	6 cut(s)	487, 543, 780, 1041, 1074, 1173
SinI	GGWCC	2 cut(s)	81, 955
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
Sse9I	AATT	6 cut(s)	184, 280, 397, 787, 930, 996
SsiI	CCGC	3 cut(s)	1220, 1228, 1247
SspMI	CTAG	4 cut(s)	351, 557, 972, 1190
SstI	GAGCTC	1 cut(s)	951
StyI	CCWWGG	3 cut(s)	45, 84, 404
TaaI	ACNGT	3 cut(s)	124, 371, 423
TaiI	ACGT	2 cut(s)	30, 1227
TaqI	TCGA	2 cut(s)	15, 1061
TasI	AATT	6 cut(s)	184, 280, 397, 787, 930, 996
TatI	WGTACW	1 cut(s)	1150
TfiI	GAWTC	2 cut(s)	979, 1145
Tru1I	TTAA	1 cut(s)	704
Tru9I	TTAA	1 cut(s)	704
TseFI	GTSAC	3 cut(s)	33, 432, 809
TseI	GCWGC	1 cut(s)	896
Tsp45I	GTSAC	3 cut(s)	33, 432, 809
TspDTI	ATGAA	9 cut(s)	64, 311, 764, 784, 895, 1043, 1058, 1091, 1152
TspGWI	ACGGA	2 cut(s)	764, 1115
VpaK11BI	GGWCC	2 cut(s)	81, 955
XapI	RAATTY	3 cut(s)	280, 397, 787
XmnI	GAANNNNTTC	2 cut(s)	685, 791
XspI	CTAG	4 cut(s)	351, 557, 972, 1190
ZraI	GACGTC	1 cut(s)	1225
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.