Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Forward (+)

24034412 .. 24039165

Gene Structure 4754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGTTGGGATGATAAGTTCAGGTGAGGTCCCGTCGCAGTGGTTCTCTCTACCCAAAGTGGGTCGCTCTGCAATTCCAAGCCCCGTTCATCTCATTGCCTCTGCCACTTCTCTCCGCCTCACCCACCACTTCCGCCTTCATTCCCTTCTCCGCTCCTATTTTCAGAAACTTGCTCATATCAGTCCCTTGCATAAACTGAAGGAAGAGTTTAACTTTACCACTATACCATTGTCAACTCATACTTCAATTTGCTTTACTTTCTTTAATGGAAGAGACAACAGCAATGATCTCACAAATGAAGACATGCCCAACTCTAAAACGTCCACTAGAAACTCCTTCACTGGAAGACAATGGACAAATCTTCTCCTTGCTCTTAACATCATAGTTTTTATCGCGCAAGTTGGGACACAAAATGACTTAATCCTATGGGGTGCCAAGATAAATAGGCTTATCGATAAAGGGCAATTGTGGAGGCTCGTCACGAGTTCCTTTTTGCACGCAAATGTTGGCCACCTCTTGGTTAATTGCTATTCTTTGAATAATGTTGGCCCTACCATGGAGAGGCTCAGTGGTTCGAAGAGATTTCTTGCGATTTACTTCACCTCTGCAATTGCAAGTTCAGCAATGAGTTATTGGTGCAGCCAGGCACCTGCGGTTGGTGCATCAGGAGCAGTCTTCGGCTTAGTGGGATCTCTTGCAGTATTTGTCATGAGGCATAGAGGTCTGGTTGGAGGTGGCAAAGAAGATCTAAAGCACATAGCATATGTAATTGTCCTAAATATGTCTATTGGGCTGTTCTCCAAAGGCATTGACAACTGGGGCCATCTGGGAGGCTTGCTTGGTGGAGCTGCCACAGCGTGGCTTTTAGGACCTGCCTGGAAGTACGAATTTTCTTCCACTGATAGACGAAGGATCTTTGCTGACAAGGCTCCTATTTTCTACCTCATCAACAGGAAAACTAGATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

322

Amino Acids

35.59

Weight (kDa)

10.12

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	153 - 290	8.2e-38	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	658
Acc36I	ACCTGC	2 cut(s)	658, 880
AccB1I	GGYRCC	2 cut(s)	431, 646
AccB7I	CCANNNNNTGG	2 cut(s)	517, 858
AccBSI	CCGCTC	1 cut(s)	153
AccII	CGCG	1 cut(s)	395
AciI	CCGC	4 cut(s)	115, 133, 151, 653
AclWI	GGATC	2 cut(s)	697, 920
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	1 cut(s)	887
AcuI	CTGAAG	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	858
AfaI	GTAC	1 cut(s)	884
AfiI	CCNNNNNNNGG	6 cut(s)	59, 517, 556, 561, 656, 858
AgsI	TTSAA	2 cut(s)	246, 538
AjnI	CCWGG	2 cut(s)	642, 875
AloI	GAACNNNNNNTCC	1 cut(s)	33
AluBI	AGCT	1 cut(s)	848
AluI	AGCT	1 cut(s)	848
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	697, 920
AoxI	GGCC	3 cut(s)	508, 547, 820
ApeKI	GCWGC	2 cut(s)	639, 848
ApoI	RAATTY	1 cut(s)	887
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	4 cut(s)	28, 548, 820, 869
AsuHPI	GGTGA	3 cut(s)	35, 112, 592
AsuII	TTCGAA	1 cut(s)	575
AvaII	GGWCC	2 cut(s)	28, 869
BalI	TGGCCA	1 cut(s)	510
BanI	GGYRCC	2 cut(s)	431, 646
BauI	CACGAG	1 cut(s)	481
BbsI	GAAGAC	3 cut(s)	306, 352, 667
BbvI	GCAGC	2 cut(s)	651, 835
BccI	CCATC	1 cut(s)	831
BciT130I	CCWGG	2 cut(s)	644, 877
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	2 cut(s)	327, 960
BfuAI	ACCTGC	2 cut(s)	658, 880
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	2 cut(s)	640, 849
BlsI	GCNGC	2 cut(s)	641, 850
Bme1390I	CCNGG	2 cut(s)	644, 877
Bme18I	GGWCC	2 cut(s)	28, 869
BmgT120I	GGNCC	4 cut(s)	28, 548, 820, 869
BmiI	GGNNCC	5 cut(s)	30, 433, 648, 821, 930
BmrFI	CCNGG	2 cut(s)	644, 877
BmrI	ACTGGG	1 cut(s)	826
BmsI	GCATC	1 cut(s)	671
BmuI	ACTGGG	1 cut(s)	826
BpiI	GAAGAC	3 cut(s)	306, 352, 667
Bpu14I	TTCGAA	1 cut(s)	575
Bsa29I	ATCGAT	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	555
Bsc4I	CCNNNNNNNGG	6 cut(s)	59, 517, 556, 561, 656, 858
Bse1I	ACTGG	2 cut(s)	346, 821
Bse3DI	GCAATG	3 cut(s)	93, 289, 630
BseBI	CCWGG	2 cut(s)	644, 877
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	6 cut(s)	59, 517, 556, 561, 656, 858
BseMI	GCAATG	3 cut(s)	93, 289, 630
BseMII	CTCAG	1 cut(s)	580
BseNI	ACTGG	2 cut(s)	346, 821
BseXI	GCAGC	2 cut(s)	651, 835
BsgI	GTGCAG	1 cut(s)	658
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	3 cut(s)	510, 549, 822
BshNI	GGYRCC	2 cut(s)	431, 646
BshVI	ATCGAT	1 cut(s)	453
BslFI	GGGAC	3 cut(s)	14, 168, 418
BslI	CCNNNNNNNGG	6 cut(s)	59, 517, 556, 561, 656, 858
BsmAI	GTCTC	1 cut(s)	267
BsmFI	GGGAC	3 cut(s)	14, 168, 418
BsnI	GGCC	3 cut(s)	510, 549, 822
Bsp119I	TTCGAA	1 cut(s)	575
Bsp143I	GATC	5 cut(s)	286, 689, 745, 912, 962
Bsp19I	CCATGG	1 cut(s)	555
BspACI	CCGC	4 cut(s)	115, 133, 151, 653
BspANI	GGCC	3 cut(s)	510, 549, 822
BspCNI	CTCAG	1 cut(s)	579
BspDI	ATCGAT	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	395
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	5 cut(s)	30, 433, 648, 821, 930
BspMI	ACCTGC	2 cut(s)	658, 880
BspPI	GGATC	2 cut(s)	697, 920
BspT104I	TTCGAA	1 cut(s)	575
BspT107I	GGYRCC	2 cut(s)	431, 646
BsrBI	CCGCTC	1 cut(s)	153
BsrDI	GCAATG	3 cut(s)	93, 289, 630
BsrI	ACTGG	2 cut(s)	346, 821
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	5 cut(s)	286, 689, 745, 912, 962
BssSI	CACGAG	1 cut(s)	481
BssT1I	CCWWGG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	481
Bst2UI	CCWGG	2 cut(s)	644, 877
Bst6I	CTCTTC	3 cut(s)	198, 265, 572
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	2 cut(s)	498, 836
BstDEI	CTNAG	2 cut(s)	566, 682
BstDSI	CCRYGG	1 cut(s)	555
BstF5I	GGATG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	5 cut(s)	289, 692, 748, 915, 965
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	5 cut(s)	286, 689, 745, 912, 962
BstMWI	GCNNNNNNNGC	5 cut(s)	620, 659, 668, 854, 926
BstNI	CCWGG	2 cut(s)	644, 877
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	642, 875
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	651, 835
BstV2I	GAAGAC	3 cut(s)	306, 352, 667
BstX2I	RGATCY	3 cut(s)	689, 745, 912
BstYI	RGATCY	3 cut(s)	689, 745, 912
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	510, 549, 822
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	555
BtsCI	GGATG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	4 cut(s)	44, 339, 574, 897
BveI	ACCTGC	2 cut(s)	658, 880
Cac8I	GCNNGC	2 cut(s)	498, 836
CciI	TCATGA	1 cut(s)	708
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	4 cut(s)	28, 548, 820, 869
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	883
CviAII	CATG	3 cut(s)	304, 556, 709
CviQI	GTAC	1 cut(s)	883
DdeI	CTNAG	2 cut(s)	566, 682
DpnI	GATC	5 cut(s)	288, 691, 747, 914, 964
DpnII	GATC	5 cut(s)	286, 689, 745, 912, 962
DraIII	CACNNNGTG	1 cut(s)	858
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	3 cut(s)	198, 265, 572
EarI	CTCTTC	3 cut(s)	198, 265, 572
EciI	GGCGGA	2 cut(s)	104, 122
Eco130I	CCWWGG	1 cut(s)	555
Eco47I	GGWCC	2 cut(s)	28, 869
Eco57I	CTGAAG	1 cut(s)	218
EcoO109I	RGGNCCY	2 cut(s)	28, 869
EcoRII	CCWGG	2 cut(s)	642, 875
EcoT14I	CCWWGG	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	3 cut(s)	307, 559, 712
FaqI	GGGAC	3 cut(s)	14, 168, 418
FatI	CATG	3 cut(s)	303, 555, 708
FauNDI	CATATG	1 cut(s)	763
Fnu4HI	GCNGC	2 cut(s)	640, 849
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	640, 849
FspBI	CTAG	2 cut(s)	327, 960
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	2 cut(s)	640, 849
HaeIII	GGCC	3 cut(s)	510, 549, 822
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	3 cut(s)	307, 559, 712
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HphI	GGTGA	3 cut(s)	35, 112, 592
Hpy166II	GTNNAC	2 cut(s)	234, 324
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	3 cut(s)	481, 666, 709
Hpy8I	GTNNAC	2 cut(s)	234, 324
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	5 cut(s)	146, 155, 193, 346, 903
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	8 cut(s)	71, 190, 496, 608, 614, 639, 662, 698
HpyF10VI	GCNNNNNNNGC	5 cut(s)	620, 659, 668, 854, 926
HpyF3I	CTNAG	2 cut(s)	566, 682
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	3 cut(s)	307, 559, 712
HspAI	GCGC	1 cut(s)	395
Kzo9I	GATC	5 cut(s)	286, 689, 745, 912, 962
LmnI	GCTCC	4 cut(s)	158, 668, 845, 934
Lsp1109I	GCAGC	2 cut(s)	651, 835
LweI	GCATC	1 cut(s)	671
MaeI	CTAG	2 cut(s)	327, 960
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	5 cut(s)	288, 691, 747, 914, 964
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	5 cut(s)	286, 689, 745, 912, 962
MboII	GAAGA	9 cut(s)	215, 282, 311, 353, 357, 589, 667, 755, 885
MfeI	CAATTG	2 cut(s)	464, 609
MflI	RGATCY	3 cut(s)	689, 745, 912
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	7 cut(s)	72, 246, 464, 523, 609, 768, 887
MluNI	TGGCCA	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	709
Mox20I	TGGCCA	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	5 cut(s)	210, 264, 375, 419, 522
MslI	CAYNNNNRTG	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	510
MspR9I	CCNGG	2 cut(s)	644, 877
MunI	CAATTG	2 cut(s)	464, 609
MvaI	CCWGG	2 cut(s)	644, 877
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	5 cut(s)	620, 659, 668, 854, 926
NcoI	CCATGG	1 cut(s)	555
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	5 cut(s)	286, 689, 745, 912, 962
NlaIII	CATG	3 cut(s)	307, 559, 712
NlaIV	GGNNCC	5 cut(s)	30, 433, 648, 821, 930
NmuCI	GTSAC	1 cut(s)	478
NspI	RCATGY	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	575
PagI	TCATGA	1 cut(s)	708
PaqCI	CACCTGC	1 cut(s)	658
PflMI	CCANNNNNTGG	2 cut(s)	517, 858
PkrI	GCNGC	2 cut(s)	641, 850
PpuMI	RGGWCCY	2 cut(s)	28, 869
Psp5II	RGGWCCY	2 cut(s)	28, 869
Psp6I	CCWGG	2 cut(s)	642, 875
PspGI	CCWGG	2 cut(s)	642, 875
PspN4I	GGNNCC	5 cut(s)	30, 433, 648, 821, 930
PspPI	GGNCC	4 cut(s)	28, 548, 820, 869
PspPPI	RGGWCCY	2 cut(s)	28, 869
PsuI	RGATCY	3 cut(s)	689, 745, 912
RsaI	GTAC	1 cut(s)	884
RsaNI	GTAC	1 cut(s)	883
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	5 cut(s)	210, 264, 375, 419, 522
SatI	GCNGC	2 cut(s)	640, 849
Sau3AI	GATC	5 cut(s)	286, 689, 745, 912, 962
Sau96I	GGNCC	4 cut(s)	28, 548, 820, 869
ScrFI	CCNGG	2 cut(s)	644, 877
SfaNI	GCATC	1 cut(s)	671
SfuI	TTCGAA	1 cut(s)	575
SinI	GGWCC	2 cut(s)	28, 869
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	7 cut(s)	72, 246, 464, 523, 609, 768, 887
SsiI	CCGC	4 cut(s)	115, 133, 151, 653
SspMI	CTAG	2 cut(s)	327, 960
StyD4I	CCNGG	2 cut(s)	642, 875
StyI	CCWWGG	1 cut(s)	555
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	2 cut(s)	453, 575
TasI	AATT	7 cut(s)	72, 246, 464, 523, 609, 768, 887
Tru1I	TTAA	5 cut(s)	210, 264, 375, 419, 522
Tru9I	TTAA	5 cut(s)	210, 264, 375, 419, 522
TscAI	CASTG	4 cut(s)	44, 346, 574, 904
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	2 cut(s)	639, 848
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	77, 128, 312
TspRI	CASTG	4 cut(s)	44, 346, 574, 904
Van91I	CCANNNNNTGG	2 cut(s)	517, 858
VpaK11BI	GGWCC	2 cut(s)	28, 869
XapI	RAATTY	1 cut(s)	887
XceI	RCATGY	1 cut(s)	307
XspI	CTAG	2 cut(s)	327, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.