Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Forward (+)

24697286 .. 24701439

Gene Structure 4154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGTTGGGATGATAAGTTCAGGTGATCTCCAGTCACAGTGGTTCTCTCGTCCCAAAGTGGGTCGCTCTGCAATTCCAAGCCCCGTTCATCTCATTGCCTCTGCCACTTCTCTCCGCCTCACCCACCACTTCCGCCTTCATTCCCTTCTTCGCTCCTATTTTCAGAAACTTGCTCATATCAGTCCCTTGCATAAACTGAAGGAAGGGTTTAACATTATACCGTTGCCAACTCATACTTCAATTTGCTTTGCTTTCTTTAATGGAAGAGACAACAGCAATGATCTCACTAATGAAGACATGCCCAACTCTAAAACGTCCACTAGGAACTCCTTCACTGGAAGACAATGGACAAATCTTCTCCTTGCTCTTAACATCATAGTTTATATGGCGCAAGTTGGGACACAAAATGACTTAATCCTATGGGGTGCCAAGATAAATAGGCTTATCGATAAAGGGCAATTGTGGAGGCTGGTCACGAGTTCCTTTTTGCACGCAAATGTTGGCCACCTCTTGGTTAATTGCTATTCTTTGAATAATGTTGGCCCTACCATGGAGAGGCTCAGCGGTTCAAAGAGATTTCTTGCGATTTACTTCACCTCTGCAATTGCAAGTTCAGCAATGAGTTATTGGTGCAGCCAGGCACCTGCAGTTGGTGCATCAGGAGCAGTCTTCGGCTTAGTTGGATCTCTTGCAGTATTTGTCATGAGGCATAGAGGTCTGGTTGGAGGTGGCAAAGAAGATCTAAAGCACATAGCATATGTAATTGTCCTAAATATGTCTATTGGGCTGTTCTCCAAAGGCATTGACAACTGGGGCCATCTGGGAGGCTTGCTTGGTGGAGCTGCCACAGCATGGCTTTTAGGACCTGCCTGGAAGTATGAATTTTCTTCCACTCATAGACGAAGGATCTTTGCTGACAAGGCTCCTATTTTCTACCTCATCAACAGGAAAACTAGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

321

Amino Acids

35.46

Weight (kDa)

10.26

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	151 - 288	8.1e-38	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	652
Acc36I	ACCTGC	2 cut(s)	652, 874
AccB1I	GGYRCC	2 cut(s)	425, 640
AccB7I	CCANNNNNTGG	2 cut(s)	511, 852
AciI	CCGC	3 cut(s)	115, 133, 564
AclWI	GGATC	2 cut(s)	691, 914
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	881
AcuI	CTGAAG	1 cut(s)	218
AfiI	CCNNNNNNNGG	6 cut(s)	59, 511, 550, 555, 650, 852
AgsI	TTSAA	3 cut(s)	240, 532, 570
AjnI	CCWGG	2 cut(s)	636, 869
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AloI	GAACNNNNNNTCC	1 cut(s)	33
AluBI	AGCT	1 cut(s)	842
AluI	AGCT	1 cut(s)	842
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	691, 914
AoxI	GGCC	3 cut(s)	502, 541, 814
ApeKI	GCWGC	2 cut(s)	633, 842
ApoI	RAATTY	1 cut(s)	881
Asp700I	GAANNNNTTC	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	542, 814, 863
AsuHPI	GGTGA	3 cut(s)	35, 112, 586
AvaII	GGWCC	1 cut(s)	863
BalI	TGGCCA	1 cut(s)	504
BanI	GGYRCC	2 cut(s)	425, 640
BauI	CACGAG	1 cut(s)	475
BbsI	GAAGAC	3 cut(s)	300, 346, 661
BbvI	GCAGC	2 cut(s)	645, 829
BccI	CCATC	1 cut(s)	825
BciT130I	CCWGG	2 cut(s)	638, 871
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	2 cut(s)	321, 954
BfmI	CTRYAG	1 cut(s)	645
BfuAI	ACCTGC	2 cut(s)	652, 874
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	2 cut(s)	634, 843
BlpI	GCTNAGC	1 cut(s)	560
BlsI	GCNGC	2 cut(s)	635, 844
Bme1390I	CCNGG	2 cut(s)	638, 871
Bme18I	GGWCC	1 cut(s)	863
BmgT120I	GGNCC	3 cut(s)	542, 814, 863
BmiI	GGNNCC	4 cut(s)	427, 642, 815, 924
BmrFI	CCNGG	2 cut(s)	638, 871
BmrI	ACTGGG	1 cut(s)	820
BmsI	GCATC	1 cut(s)	665
BmuI	ACTGGG	1 cut(s)	820
BpiI	GAAGAC	3 cut(s)	300, 346, 661
BpmI	CTGGAG	1 cut(s)	14
Bpu1102I	GCTNAGC	1 cut(s)	560
Bsa29I	ATCGAT	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	6 cut(s)	59, 511, 550, 555, 650, 852
Bse1I	ACTGG	3 cut(s)	31, 340, 815
Bse3DI	GCAATG	3 cut(s)	93, 283, 624
BseBI	CCWGG	2 cut(s)	638, 871
BseCI	ATCGAT	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	549
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	6 cut(s)	59, 511, 550, 555, 650, 852
BseMI	GCAATG	3 cut(s)	93, 283, 624
BseMII	CTCAG	1 cut(s)	574
BseNI	ACTGG	3 cut(s)	31, 340, 815
BseXI	GCAGC	2 cut(s)	645, 829
BsgI	GTGCAG	1 cut(s)	652
BshFI	GGCC	3 cut(s)	504, 543, 816
BshNI	GGYRCC	2 cut(s)	425, 640
BshVI	ATCGAT	1 cut(s)	447
BslFI	GGGAC	3 cut(s)	36, 168, 412
BslI	CCNNNNNNNGG	6 cut(s)	59, 511, 550, 555, 650, 852
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	3 cut(s)	36, 168, 412
BsnI	GGCC	3 cut(s)	504, 543, 816
Bsp143I	GATC	5 cut(s)	25, 280, 683, 739, 906
Bsp1720I	GCTNAGC	1 cut(s)	560
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	3 cut(s)	115, 133, 564
BspANI	GGCC	3 cut(s)	504, 543, 816
BspCNI	CTCAG	1 cut(s)	573
BspDI	ATCGAT	1 cut(s)	447
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	4 cut(s)	427, 642, 815, 924
BspMAI	CTGCAG	1 cut(s)	649
BspMI	ACCTGC	2 cut(s)	652, 874
BspPI	GGATC	2 cut(s)	691, 914
BspT107I	GGYRCC	2 cut(s)	425, 640
BsrDI	GCAATG	3 cut(s)	93, 283, 624
BsrI	ACTGG	3 cut(s)	31, 340, 815
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	5 cut(s)	25, 280, 683, 739, 906
BssSI	CACGAG	1 cut(s)	475
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	475
Bst2UI	CCWGG	2 cut(s)	638, 871
Bst4CI	ACNGT	2 cut(s)	39, 222
Bst6I	CTCTTC	1 cut(s)	259
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstC8I	GCNNGC	2 cut(s)	492, 830
BstDEI	CTNAG	2 cut(s)	560, 676
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	5 cut(s)	28, 283, 686, 742, 909
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	5 cut(s)	25, 280, 683, 739, 906
BstMWI	GCNNNNNNNGC	5 cut(s)	614, 653, 662, 848, 920
BstNI	CCWGG	2 cut(s)	638, 871
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	636, 869
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	2 cut(s)	645, 829
BstV2I	GAAGAC	3 cut(s)	300, 346, 661
BstX2I	RGATCY	3 cut(s)	683, 739, 906
BstYI	RGATCY	3 cut(s)	683, 739, 906
Bsu15I	ATCGAT	1 cut(s)	447
BsuRI	GGCC	3 cut(s)	504, 543, 816
BsuTUI	ATCGAT	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	44, 333
BveI	ACCTGC	2 cut(s)	652, 874
Cac8I	GCNNGC	2 cut(s)	492, 830
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	542, 814, 863
ClaI	ATCGAT	1 cut(s)	447
CviAII	CATG	4 cut(s)	298, 550, 703, 852
DdeI	CTNAG	2 cut(s)	560, 676
DpnI	GATC	5 cut(s)	27, 282, 685, 741, 908
DpnII	GATC	5 cut(s)	25, 280, 683, 739, 906
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
EciI	GGCGGA	2 cut(s)	104, 122
Eco130I	CCWWGG	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	863
Eco57I	CTGAAG	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	863
EcoRII	CCWGG	2 cut(s)	636, 869
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	4 cut(s)	301, 553, 706, 855
FaqI	GGGAC	3 cut(s)	36, 168, 412
FatI	CATG	4 cut(s)	297, 549, 702, 851
FauNDI	CATATG	1 cut(s)	757
Fnu4HI	GCNGC	2 cut(s)	634, 843
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	634, 843
FspBI	CTAG	2 cut(s)	321, 954
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	2 cut(s)	634, 843
GsuI	CTGGAG	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	504, 543, 816
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	4 cut(s)	301, 553, 706, 855
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HphI	GGTGA	3 cut(s)	35, 112, 586
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	3 cut(s)	475, 660, 703
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	6 cut(s)	146, 155, 193, 197, 340, 897
HpyCH4III	ACNGT	2 cut(s)	39, 222
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	9 cut(s)	71, 190, 490, 602, 608, 633, 647, 656, 692
HpyF10VI	GCNNNNNNNGC	5 cut(s)	614, 653, 662, 848, 920
HpyF3I	CTNAG	2 cut(s)	560, 676
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	4 cut(s)	301, 553, 706, 855
HspAI	GCGC	1 cut(s)	389
Kzo9I	GATC	5 cut(s)	25, 280, 683, 739, 906
LmnI	GCTCC	4 cut(s)	158, 662, 839, 928
Lsp1109I	GCAGC	2 cut(s)	645, 829
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	2 cut(s)	321, 954
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	2 cut(s)	33, 472
MalI	GATC	5 cut(s)	27, 282, 685, 741, 908
MboI	GATC	5 cut(s)	25, 280, 683, 739, 906
MboII	GAAGA	8 cut(s)	140, 276, 305, 347, 351, 661, 749, 879
MfeI	CAATTG	2 cut(s)	458, 603
MflI	RGATCY	3 cut(s)	683, 739, 906
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	7 cut(s)	72, 240, 458, 517, 603, 762, 881
MluNI	TGGCCA	1 cut(s)	504
MmeI	TCCRAC	2 cut(s)	661, 703
Mox20I	TGGCCA	1 cut(s)	504
MroXI	GAANNNNTTC	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	5 cut(s)	210, 258, 369, 413, 516
MslI	CAYNNNNRTG	1 cut(s)	495
Msp20I	TGGCCA	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	564
MspR9I	CCNGG	2 cut(s)	638, 871
MunI	CAATTG	2 cut(s)	458, 603
MvaI	CCWGG	2 cut(s)	638, 871
MwoI	GCNNNNNNNGC	5 cut(s)	614, 653, 662, 848, 920
NcoI	CCATGG	1 cut(s)	549
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	5 cut(s)	25, 280, 683, 739, 906
NlaIII	CATG	4 cut(s)	301, 553, 706, 855
NlaIV	GGNNCC	4 cut(s)	427, 642, 815, 924
NmuCI	GTSAC	2 cut(s)	33, 472
NspI	RCATGY	1 cut(s)	301
PagI	TCATGA	1 cut(s)	702
PaqCI	CACCTGC	1 cut(s)	652
PdmI	GAANNNNTTC	1 cut(s)	329
PflMI	CCANNNNNTGG	2 cut(s)	511, 852
PkrI	GCNGC	2 cut(s)	635, 844
PpuMI	RGGWCCY	1 cut(s)	863
Psp5II	RGGWCCY	1 cut(s)	863
Psp6I	CCWGG	2 cut(s)	636, 869
PspGI	CCWGG	2 cut(s)	636, 869
PspN4I	GGNNCC	4 cut(s)	427, 642, 815, 924
PspPI	GGNCC	3 cut(s)	542, 814, 863
PspPPI	RGGWCCY	1 cut(s)	863
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	3 cut(s)	683, 739, 906
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	5 cut(s)	210, 258, 369, 413, 516
SatI	GCNGC	2 cut(s)	634, 843
Sau3AI	GATC	5 cut(s)	25, 280, 683, 739, 906
Sau96I	GGNCC	3 cut(s)	542, 814, 863
ScrFI	CCNGG	2 cut(s)	638, 871
SfaNI	GCATC	1 cut(s)	665
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	863
SmiMI	CAYNNNNRTG	1 cut(s)	495
Sse9I	AATT	7 cut(s)	72, 240, 458, 517, 603, 762, 881
SsiI	CCGC	3 cut(s)	115, 133, 564
SspMI	CTAG	2 cut(s)	321, 954
StyD4I	CCNGG	2 cut(s)	636, 869
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	39, 222
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	447
TasI	AATT	7 cut(s)	72, 240, 458, 517, 603, 762, 881
Tru1I	TTAA	5 cut(s)	210, 258, 369, 413, 516
Tru9I	TTAA	5 cut(s)	210, 258, 369, 413, 516
TscAI	CASTG	2 cut(s)	44, 340
TseFI	GTSAC	2 cut(s)	33, 472
TseI	GCWGC	2 cut(s)	633, 842
Tsp45I	GTSAC	2 cut(s)	33, 472
TspDTI	ATGAA	4 cut(s)	77, 128, 306, 894
TspRI	CASTG	2 cut(s)	44, 340
Van91I	CCANNNNNTGG	2 cut(s)	511, 852
VpaK11BI	GGWCC	1 cut(s)	863
XapI	RAATTY	1 cut(s)	881
XceI	RCATGY	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	2 cut(s)	321, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.