Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Reverse (-)

46390367 .. 46395954

Gene Structure 5588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG369400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTTGGGATGTTAAGTTCAGGTGAGGTCCCGTCGCAGTGGTTCTCTCTAGCCAAAGTGGGTCGCTCTGCAATTCCAACCCCCGTTCATCTCATTGCCTCTGCCACTTCTCTCCGCCTCACCCACCACTTCCGCCTTCATTCCCTTCTCCGCTCCTATTTTCAGAAACTTGTTCATATCAGTCCCTTGCATAAATTGAAGCAAGGGTTCAGCACTATACCATTGTCAACTCATACTTCAATTTGCTCTACTTTCTTTAATGGAAGAGACAACACCAATGATCTCACAAATGAAGACATGCCCAACTCTAAAACGTCCACTAGAAACTCCTTCACTGGAAGACAATGGACAAATCTTCTCCTTGCTCTTAATATCATAGTTTATATCGCGCAAGTTGGGACACAAAATGACTTGATCCTATGGGGTGCCAAGATAAATAGGCTCATCGATAAAGGGCAATTGTGGAGGCTCGTCACGAGTTCCTTTTTGCACGCAAATGTTGGCCACCTCTTGGTTAATTGCTATTCTTTGAATAATGTTGGCCCTACCATGGAGAGGCTCAGTGGTCCAAAGAGATTTCTTGCGATTTACTTCACCTCTGCAATTGCAAGTTCAGCAATGAGTTATTGGTGCAGCCAGGCACCTGCGGTTGGTGCATCAGGAGCAGTCTTCGGCTTAGTAAGTCATTTTTCACCAGCCAGAATGATTTTCTACACTTCCTACATGCACCATGTAACTGAGCAGAGCAGTTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

252

Amino Acids

27.93

Weight (kDa)

9.96

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	151 - 230	4e-24	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	652
Acc36I	ACCTGC	1 cut(s)	652
AccB1I	GGYRCC	2 cut(s)	425, 640
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccBSI	CCGCTC	1 cut(s)	153
AccII	CGCG	1 cut(s)	389
AciI	CCGC	4 cut(s)	115, 133, 151, 647
AclWI	GGATC	1 cut(s)	409
AcoI	YGGCCR	1 cut(s)	502
AfiI	CCNNNNNNNGG	4 cut(s)	511, 550, 555, 650
AgsI	TTSAA	3 cut(s)	199, 240, 532
AjnI	CCWGG	1 cut(s)	636
AloI	GAACNNNNNNTCC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	409
AoxI	GGCC	2 cut(s)	502, 541
ApeKI	GCWGC	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	28, 542, 566
AsuHPI	GGTGA	4 cut(s)	35, 112, 586, 684
AvaII	GGWCC	2 cut(s)	28, 566
BalI	TGGCCA	1 cut(s)	504
BanI	GGYRCC	2 cut(s)	425, 640
BauI	CACGAG	1 cut(s)	475
BbsI	GAAGAC	3 cut(s)	300, 346, 661
BbvI	GCAGC	1 cut(s)	645
BciT130I	CCWGG	1 cut(s)	638
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	2 cut(s)	50, 321
BfuAI	ACCTGC	1 cut(s)	652
BisI	GCNGC	1 cut(s)	634
BlsI	GCNGC	1 cut(s)	635
Bme1390I	CCNGG	1 cut(s)	638
Bme18I	GGWCC	2 cut(s)	28, 566
BmgT120I	GGNCC	3 cut(s)	28, 542, 566
BmiI	GGNNCC	3 cut(s)	30, 427, 642
BmrFI	CCNGG	1 cut(s)	638
BmsI	GCATC	1 cut(s)	665
BpiI	GAAGAC	3 cut(s)	300, 346, 661
Bsa29I	ATCGAT	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	4 cut(s)	511, 550, 555, 650
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	2 cut(s)	93, 624
BseBI	CCWGG	1 cut(s)	638
BseCI	ATCGAT	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	549
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	4 cut(s)	511, 550, 555, 650
BseMI	GCAATG	2 cut(s)	93, 624
BseMII	CTCAG	2 cut(s)	574, 729
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	645
BsgI	GTGCAG	1 cut(s)	652
Bsh1236I	CGCG	1 cut(s)	389
BshFI	GGCC	2 cut(s)	504, 543
BshNI	GGYRCC	2 cut(s)	425, 640
BshVI	ATCGAT	1 cut(s)	447
BslFI	GGGAC	3 cut(s)	14, 168, 412
BslI	CCNNNNNNNGG	4 cut(s)	511, 550, 555, 650
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	3 cut(s)	14, 168, 412
BsnI	GGCC	2 cut(s)	504, 543
Bsp143I	GATC	2 cut(s)	280, 414
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	4 cut(s)	115, 133, 151, 647
BspANI	GGCC	2 cut(s)	504, 543
BspCNI	CTCAG	2 cut(s)	573, 730
BspDI	ATCGAT	1 cut(s)	447
BspFNI	CGCG	1 cut(s)	389
BspLI	GGNNCC	3 cut(s)	30, 427, 642
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	1 cut(s)	409
BspT107I	GGYRCC	2 cut(s)	425, 640
BsrBI	CCGCTC	1 cut(s)	153
BsrDI	GCAATG	2 cut(s)	93, 624
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	2 cut(s)	280, 414
BssSI	CACGAG	1 cut(s)	475
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	475
Bst2UI	CCWGG	1 cut(s)	638
Bst6I	CTCTTC	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	3 cut(s)	560, 676, 738
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	2 cut(s)	283, 417
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	2 cut(s)	280, 414
BstMWI	GCNNNNNNNGC	3 cut(s)	614, 653, 662
BstNI	CCWGG	1 cut(s)	638
BstNSI	RCATGY	2 cut(s)	301, 727
BstSCI	CCNGG	1 cut(s)	636
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	645
BstV2I	GAAGAC	3 cut(s)	300, 346, 661
Bsu15I	ATCGAT	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	504, 543
BsuTUI	ATCGAT	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	3 cut(s)	44, 333, 568
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	1 cut(s)	492
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	28, 542, 566
ClaI	ATCGAT	1 cut(s)	447
CviAII	CATG	4 cut(s)	298, 550, 724, 731
CviJI	RGCY	9 cut(s)	53, 442, 469, 504, 543, 559, 636, 675, 698
CviKI_1	RGCY	9 cut(s)	53, 442, 469, 504, 543, 559, 636, 675, 698
DdeI	CTNAG	3 cut(s)	560, 676, 738
DpnI	GATC	2 cut(s)	282, 416
DpnII	GATC	2 cut(s)	280, 414
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
EciI	GGCGGA	2 cut(s)	104, 122
Eco130I	CCWWGG	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	28, 566
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	636
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	4 cut(s)	301, 553, 727, 734
FaqI	GGGAC	3 cut(s)	14, 168, 412
FatI	CATG	4 cut(s)	297, 549, 723, 730
Fnu4HI	GCNGC	1 cut(s)	634
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	634
FspBI	CTAG	2 cut(s)	50, 321
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	1 cut(s)	634
HaeIII	GGCC	2 cut(s)	504, 543
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	4 cut(s)	301, 553, 727, 734
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HphI	GGTGA	4 cut(s)	35, 112, 586, 684
Hpy166II	GTNNAC	2 cut(s)	228, 318
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	475, 660
Hpy8I	GTNNAC	2 cut(s)	228, 318
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	3 cut(s)	146, 155, 340
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	8 cut(s)	71, 190, 490, 602, 608, 633, 656, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	614, 653, 662
HpyF3I	CTNAG	3 cut(s)	560, 676, 738
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	4 cut(s)	301, 553, 727, 734
HspAI	GCGC	1 cut(s)	389
Kzo9I	GATC	2 cut(s)	280, 414
LmnI	GCTCC	2 cut(s)	158, 662
LpnPI	CCDG	8 cut(s)	6, 321, 623, 645, 650, 657, 708, 712
Lsp1109I	GCAGC	1 cut(s)	645
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	2 cut(s)	50, 321
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	2 cut(s)	472, 733
MalI	GATC	2 cut(s)	282, 416
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	2 cut(s)	280, 414
MboII	GAAGA	5 cut(s)	276, 305, 347, 351, 661
MfeI	CAATTG	2 cut(s)	458, 603
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	6 cut(s)	72, 194, 240, 458, 517, 603
MluNI	TGGCCA	1 cut(s)	504
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	19, 109, 128, 459, 518, 549, 607
Mox20I	TGGCCA	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	4 cut(s)	14, 258, 369, 516
MslI	CAYNNNNRTG	1 cut(s)	495
Msp20I	TGGCCA	1 cut(s)	504
MspR9I	CCNGG	1 cut(s)	638
MunI	CAATTG	2 cut(s)	458, 603
MvaI	CCWGG	1 cut(s)	638
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	3 cut(s)	614, 653, 662
NcoI	CCATGG	1 cut(s)	549
NdeII	GATC	2 cut(s)	280, 414
NlaIII	CATG	4 cut(s)	301, 553, 727, 734
NlaIV	GGNNCC	3 cut(s)	30, 427, 642
NmuCI	GTSAC	1 cut(s)	472
NspI	RCATGY	2 cut(s)	301, 727
PaqCI	CACCTGC	1 cut(s)	652
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	635
PpuMI	RGGWCCY	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	3 cut(s)	30, 427, 642
PspPI	GGNCC	3 cut(s)	28, 542, 566
PspPPI	RGGWCCY	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	14, 258, 369, 516
SatI	GCNGC	1 cut(s)	634
Sau3AI	GATC	2 cut(s)	280, 414
Sau96I	GGNCC	3 cut(s)	28, 542, 566
ScrFI	CCNGG	1 cut(s)	638
SetI	ASST	6 cut(s)	25, 30, 317, 510, 599, 646
SfaNI	GCATC	1 cut(s)	665
SinI	GGWCC	2 cut(s)	28, 566
SmiMI	CAYNNNNRTG	1 cut(s)	495
Sse9I	AATT	6 cut(s)	72, 194, 240, 458, 517, 603
SsiI	CCGC	4 cut(s)	115, 133, 151, 647
SspMI	CTAG	2 cut(s)	50, 321
StyD4I	CCNGG	1 cut(s)	636
StyI	CCWWGG	1 cut(s)	549
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	447
TasI	AATT	6 cut(s)	72, 194, 240, 458, 517, 603
Tru1I	TTAA	4 cut(s)	14, 258, 369, 516
Tru9I	TTAA	4 cut(s)	14, 258, 369, 516
TscAI	CASTG	3 cut(s)	44, 340, 568
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	1 cut(s)	633
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	4 cut(s)	77, 128, 164, 306
TspRI	CASTG	3 cut(s)	44, 340, 568
Van91I	CCANNNNNTGG	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	28, 566
XceI	RCATGY	2 cut(s)	301, 727
XspI	CTAG	2 cut(s)	50, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.