Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Reverse (-)

42242563 .. 42252596

Gene Structure 10034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGATAAGTTCAGGTGATCTCCAGTCACAATGGTTCTCTCTACCCAAAGTGGGTCGCTCTGCAATTCCAACCCCCGTTCATCTCATTGCCTCTGCCACTTCTCTCCGCCTCACCCACCACTTCCGCCTTCATTCCTTTCTCTGCTCCTATTTTCAGAAACTTGTTCATATCAGTCCCTTGCATAAATTGAAGCAAGGGTTCAGCACTATACCATTGTCAACTCATACTTCAATTTGCTCTACTTTCTTTAATGGAAGAGACAACATCAATGATCTCACAAATGAAGACATGCCCAACTCTAAAACGTCCACGAGAAACTTGTTCACTGGAAGACAAAGGACAAATCTTCTCCTTGCTCTTAATATCATAGTTTATATCGAGCAAGTTGGGACAAAAAATGACTTAATCCTATGGGGTGCCAAGATAAATAGGCTCATCGATAAAGGGCAATTGTGGAGGCTCGTCACGAGTTCCTTTTTGCACGCCAATGTTGGCCACCTCTTGGTTAACTGCTATTCTTTGAATAATGTCGGCCCTACCATGGAGAGGCTCAGTGGTTCAAAGAGATTTCTTGTGATTTACTTCACCTCTGCAATTGCAAGTTCAGCAATGAGTTATTGGTGCAGCCAGGCACCTGCGGTTGGTGCATCAGGAGCAGTCTTCGGCTTAGTGGGATCTCTTGCAGTATTTGTCATGAGGCATAGAGGTCTGGTTGGAGGTGGCAAAGAAGATCTAAAGCACATAGCATATGTAATTGTCCTAAATATGGCGCGCATTGACAACTGGGGCCATCTGGGAGGCTTGCTTGGTGGAGCTGCCACAGCATGGCTTTTAGGACCTGCCTGGAAGTACGAATTTTCTTCCACTGATAGACGAAGGATCTTTGCTGACAAGGCTCCTATTTTCTACCTCATCAACAGGAAAACTAGATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

311

Amino Acids

34.51

Weight (kDa)

10.16

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	148 - 279	8.3e-34	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	643
Acc36I	ACCTGC	2 cut(s)	643, 847
AccB1I	GGYRCC	2 cut(s)	416, 631
AccB7I	CCANNNNNTGG	2 cut(s)	502, 825
AccII	CGCG	1 cut(s)	772
AciI	CCGC	3 cut(s)	106, 124, 638
AclWI	GGATC	2 cut(s)	682, 887
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	854
AfaI	GTAC	1 cut(s)	851
AfiI	CCNNNNNNNGG	7 cut(s)	50, 502, 541, 546, 641, 766, 825
AgsI	TTSAA	4 cut(s)	190, 231, 523, 561
AjnI	CCWGG	2 cut(s)	627, 842
AluBI	AGCT	1 cut(s)	815
AluI	AGCT	1 cut(s)	815
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	682, 887
AoxI	GGCC	3 cut(s)	493, 532, 787
ApeKI	GCWGC	2 cut(s)	624, 815
ApoI	RAATTY	1 cut(s)	854
AspLEI	GCGC	2 cut(s)	772, 774
AspS9I	GGNCC	3 cut(s)	533, 787, 836
AsuHPI	GGTGA	3 cut(s)	26, 103, 577
AvaII	GGWCC	1 cut(s)	836
BalI	TGGCCA	1 cut(s)	495
BanI	GGYRCC	2 cut(s)	416, 631
BauI	CACGAG	2 cut(s)	310, 466
BbsI	GAAGAC	3 cut(s)	291, 337, 652
BbvI	GCAGC	2 cut(s)	636, 802
BccI	CCATC	1 cut(s)	798
BciT130I	CCWGG	2 cut(s)	629, 844
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	927
BfuAI	ACCTGC	2 cut(s)	643, 847
BglII	AGATCT	1 cut(s)	730
BisI	GCNGC	2 cut(s)	625, 816
BlsI	GCNGC	2 cut(s)	626, 817
Bme1390I	CCNGG	2 cut(s)	629, 844
Bme18I	GGWCC	1 cut(s)	836
BmgT120I	GGNCC	3 cut(s)	533, 787, 836
BmiI	GGNNCC	4 cut(s)	418, 633, 788, 897
BmrFI	CCNGG	2 cut(s)	629, 844
BmrI	ACTGGG	1 cut(s)	793
BmsI	GCATC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	793
BpiI	GAAGAC	3 cut(s)	291, 337, 652
BpmI	CTGGAG	1 cut(s)	5
Bsa29I	ATCGAT	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	7 cut(s)	50, 502, 541, 546, 641, 766, 825
Bse1I	ACTGG	3 cut(s)	22, 331, 788
Bse3DI	GCAATG	2 cut(s)	84, 615
BseBI	CCWGG	2 cut(s)	629, 844
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	540
BseLI	CCNNNNNNNGG	7 cut(s)	50, 502, 541, 546, 641, 766, 825
BseMI	GCAATG	2 cut(s)	84, 615
BseMII	CTCAG	1 cut(s)	565
BseNI	ACTGG	3 cut(s)	22, 331, 788
BsePI	GCGCGC	1 cut(s)	770
BseXI	GCAGC	2 cut(s)	636, 802
BsgI	GTGCAG	1 cut(s)	643
Bsh1236I	CGCG	1 cut(s)	772
BshFI	GGCC	3 cut(s)	495, 534, 789
BshNI	GGYRCC	2 cut(s)	416, 631
BshVI	ATCGAT	1 cut(s)	438
BslFI	GGGAC	2 cut(s)	159, 403
BslI	CCNNNNNNNGG	7 cut(s)	50, 502, 541, 546, 641, 766, 825
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	159, 403
BsnI	GGCC	3 cut(s)	495, 534, 789
Bsp143I	GATC	6 cut(s)	16, 271, 674, 730, 879, 929
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	3 cut(s)	106, 124, 638
BspANI	GGCC	3 cut(s)	495, 534, 789
BspCNI	CTCAG	1 cut(s)	564
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	772
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	4 cut(s)	418, 633, 788, 897
BspMI	ACCTGC	2 cut(s)	643, 847
BspPI	GGATC	2 cut(s)	682, 887
BspT107I	GGYRCC	2 cut(s)	416, 631
BsrDI	GCAATG	2 cut(s)	84, 615
BsrI	ACTGG	3 cut(s)	22, 331, 788
BssECI	CCNNGG	1 cut(s)	540
BssHII	GCGCGC	1 cut(s)	770
BssMI	GATC	6 cut(s)	16, 271, 674, 730, 879, 929
BssSI	CACGAG	2 cut(s)	310, 466
BssT1I	CCWWGG	1 cut(s)	540
Bst2BI	CACGAG	2 cut(s)	310, 466
Bst2UI	CCWGG	2 cut(s)	629, 844
Bst6I	CTCTTC	1 cut(s)	250
BstC8I	GCNNGC	3 cut(s)	483, 772, 803
BstDEI	CTNAG	2 cut(s)	551, 667
BstDSI	CCRYGG	1 cut(s)	540
BstFNI	CGCG	1 cut(s)	772
BstHHI	GCGC	2 cut(s)	772, 774
BstKTI	GATC	6 cut(s)	19, 274, 677, 733, 882, 932
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	6 cut(s)	16, 271, 674, 730, 879, 929
BstMWI	GCNNNNNNNGC	5 cut(s)	605, 644, 653, 821, 893
BstNI	CCWGG	2 cut(s)	629, 844
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	627, 842
BstUI	CGCG	1 cut(s)	772
BstV1I	GCAGC	2 cut(s)	636, 802
BstV2I	GAAGAC	3 cut(s)	291, 337, 652
BstX2I	RGATCY	3 cut(s)	674, 730, 879
BstYI	RGATCY	3 cut(s)	674, 730, 879
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	495, 534, 789
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	540
BtsIMutI	CAGTG	3 cut(s)	324, 559, 864
BveI	ACCTGC	2 cut(s)	643, 847
Cac8I	GCNNGC	3 cut(s)	483, 772, 803
CciI	TCATGA	1 cut(s)	693
CfoI	GCGC	2 cut(s)	772, 774
Cfr13I	GGNCC	3 cut(s)	533, 787, 836
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	850
CviAII	CATG	4 cut(s)	289, 541, 694, 825
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	2 cut(s)	551, 667
DpnI	GATC	6 cut(s)	18, 273, 676, 732, 881, 931
DpnII	GATC	6 cut(s)	16, 271, 674, 730, 879, 929
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
EciI	GGCGGA	2 cut(s)	95, 113
Eco130I	CCWWGG	1 cut(s)	540
Eco47I	GGWCC	1 cut(s)	836
EcoO109I	RGGNCCY	1 cut(s)	836
EcoRII	CCWGG	2 cut(s)	627, 842
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	4 cut(s)	292, 544, 697, 828
FaqI	GGGAC	2 cut(s)	159, 403
FatI	CATG	4 cut(s)	288, 540, 693, 824
FauNDI	CATATG	1 cut(s)	748
Fnu4HI	GCNGC	2 cut(s)	625, 816
Fsp4HI	GCNGC	2 cut(s)	625, 816
FspBI	CTAG	1 cut(s)	927
GlaI	GCGC	2 cut(s)	771, 773
GluI	GCNGC	2 cut(s)	625, 816
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	3 cut(s)	495, 534, 789
HhaI	GCGC	2 cut(s)	772, 774
Hin1II	CATG	4 cut(s)	292, 544, 697, 828
Hin6I	GCGC	2 cut(s)	770, 772
HinP1I	GCGC	2 cut(s)	770, 772
HincII	GTYRAC	2 cut(s)	219, 508
HindII	GTYRAC	2 cut(s)	219, 508
HpaI	GTTAAC	1 cut(s)	508
HphI	GGTGA	3 cut(s)	26, 103, 577
Hpy166II	GTNNAC	4 cut(s)	219, 309, 324, 508
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	3 cut(s)	466, 651, 694
Hpy8I	GTNNAC	4 cut(s)	219, 309, 324, 508
HpyAV	CCTTC	2 cut(s)	137, 870
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	8 cut(s)	62, 181, 481, 593, 599, 624, 647, 683
HpyF10VI	GCNNNNNNNGC	5 cut(s)	605, 644, 653, 821, 893
HpyF3I	CTNAG	2 cut(s)	551, 667
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	4 cut(s)	292, 544, 697, 828
HspAI	GCGC	2 cut(s)	770, 772
KspAI	GTTAAC	1 cut(s)	508
Kzo9I	GATC	6 cut(s)	16, 271, 674, 730, 879, 929
LmnI	GCTCC	4 cut(s)	149, 653, 812, 901
Lsp1109I	GCAGC	2 cut(s)	636, 802
LweI	GCATC	1 cut(s)	656
MaeI	CTAG	1 cut(s)	927
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	24, 463
MalI	GATC	6 cut(s)	18, 273, 676, 732, 881, 931
MboI	GATC	6 cut(s)	16, 271, 674, 730, 879, 929
MboII	GAAGA	7 cut(s)	267, 296, 338, 342, 652, 740, 852
MfeI	CAATTG	2 cut(s)	449, 594
MflI	RGATCY	3 cut(s)	674, 730, 879
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	7 cut(s)	63, 185, 231, 449, 594, 753, 854
MluNI	TGGCCA	1 cut(s)	495
MmeI	TCCRAC	2 cut(s)	92, 694
Mox20I	TGGCCA	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	4 cut(s)	249, 360, 404, 507
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	495
MspR9I	CCNGG	2 cut(s)	629, 844
MunI	CAATTG	2 cut(s)	449, 594
MvaI	CCWGG	2 cut(s)	629, 844
MvnI	CGCG	1 cut(s)	772
MwoI	GCNNNNNNNGC	5 cut(s)	605, 644, 653, 821, 893
NcoI	CCATGG	1 cut(s)	540
NdeI	CATATG	1 cut(s)	748
NdeII	GATC	6 cut(s)	16, 271, 674, 730, 879, 929
NlaIII	CATG	4 cut(s)	292, 544, 697, 828
NlaIV	GGNNCC	4 cut(s)	418, 633, 788, 897
NmuCI	GTSAC	2 cut(s)	24, 463
NspI	RCATGY	1 cut(s)	292
PagI	TCATGA	1 cut(s)	693
PaqCI	CACCTGC	1 cut(s)	643
PauI	GCGCGC	1 cut(s)	770
PflMI	CCANNNNNTGG	2 cut(s)	502, 825
PkrI	GCNGC	2 cut(s)	626, 817
PpuMI	RGGWCCY	1 cut(s)	836
Psp5II	RGGWCCY	1 cut(s)	836
Psp6I	CCWGG	2 cut(s)	627, 842
PspGI	CCWGG	2 cut(s)	627, 842
PspN4I	GGNNCC	4 cut(s)	418, 633, 788, 897
PspPI	GGNCC	3 cut(s)	533, 787, 836
PspPPI	RGGWCCY	1 cut(s)	836
PsuI	RGATCY	3 cut(s)	674, 730, 879
PteI	GCGCGC	1 cut(s)	770
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	4 cut(s)	249, 360, 404, 507
SatI	GCNGC	2 cut(s)	625, 816
Sau3AI	GATC	6 cut(s)	16, 271, 674, 730, 879, 929
Sau96I	GGNCC	3 cut(s)	533, 787, 836
ScrFI	CCNGG	2 cut(s)	629, 844
SfaNI	GCATC	1 cut(s)	656
SinI	GGWCC	1 cut(s)	836
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	7 cut(s)	63, 185, 231, 449, 594, 753, 854
SsiI	CCGC	3 cut(s)	106, 124, 638
SspMI	CTAG	1 cut(s)	927
StyD4I	CCNGG	2 cut(s)	627, 842
StyI	CCWWGG	1 cut(s)	540
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	2 cut(s)	378, 438
TasI	AATT	7 cut(s)	63, 185, 231, 449, 594, 753, 854
Tru1I	TTAA	4 cut(s)	249, 360, 404, 507
Tru9I	TTAA	4 cut(s)	249, 360, 404, 507
TscAI	CASTG	3 cut(s)	331, 559, 871
TseFI	GTSAC	2 cut(s)	24, 463
TseI	GCWGC	2 cut(s)	624, 815
Tsp45I	GTSAC	2 cut(s)	24, 463
TspDTI	ATGAA	4 cut(s)	68, 119, 155, 297
TspRI	CASTG	3 cut(s)	331, 559, 871
Van91I	CCANNNNNTGG	2 cut(s)	502, 825
VpaK11BI	GGWCC	1 cut(s)	836
XapI	RAATTY	1 cut(s)	854
XceI	RCATGY	1 cut(s)	292
XspI	CTAG	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.