Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Reverse (-)

18538023 .. 18540293

Gene Structure 2271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0210300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGAATTATGATCCAATAGCTTTCACTATTGAGGGATTTCAAAGTTGGAAGAAAGTAAGAGATGGAAAGGGTTGTGCTTTTTTGAGTCATATGGGTAAAGATTCTGACTCTTTTCATAAGAATGCTGTAAGAGTCTGTGACGACTTGATGAAGCAACCCCAGCATATACAAAATGTTGTTGAAAATTATACTTCAAAACAAATTGCAGACAATCGTCTACGAGTCAAAACTTCAATTGAAGCAGTTCGATGGCTTGCATTTCAAGGTTGTGCTTTTAGAGGTCATGATGAAAGCGTTGATTCAATCAATCCTGTAAGAGTAAAGAAGGCCATTCGGGAAGAAATTAATGATTCAAAATTTTGCATAATTGTTGATGAAGCTCGTGATGAGTCAAAGAAAGAGCAAATGGCTATAGTATTGAGATTTGTTGACAAAGATGGTTTTATTCGGGAGCGTTTTTTTGGACTTGTTCATGTGTCAGACACCAAGGCATCGACATTGCAAAAGGGAATATATTCAGTGTTATCAAATCACAATTTAGATATCCAAAATATTCGAGGCCAAGGATACGTGGTGCAAGTAATATGCGAGGTTCTTATGAACATAATTGATGAAGGGAAGAGTCTTCAAGCAGGAGATGCAGATTCAGCTTATGAGTCAATGACATCCTATCAATTTGTCTTCATCTTACATCTCATGGAAGAACTTATGGAGAATACTAATGAACTTTGTCTAGCTCTGCAAAGTCAATCTCAAGACATTTTGAATTCCATGAGTCTTTCCTCTACTAAAGCATTCATTCAAAAGTTGAGAGATGATGGATGTGATACTTTATTTGCCAAGGTAAATTCTTTTTGTGAGGCATGTAACATAGATATCCCAGATATGAATGCTCGTTATGTTGGAAGAGGAGGTCGAGCTCGTCACCAACAAGATGACTGGGCGGTTCAACATTATTACCAGGTAGATATATTTTATGCTGCCATAGATTCTCAATTGCAAGAATTAAATAACCGGTTTAATGAGCATGCTGTAGAGCTACTTATTCTTAGTTCAGCTTTGGATCCTAGTGAAATAAGCAAGTGTTTCAAGATTGATGCCATATGTCAGTTGGTAGAAAAATTCTATCCACATGACTTTGCAGATCATGAGAAGCTGCAACTCAAGAAACAACTTGAATTTTTTGAGTATGATGTGGTTAAAGATCAAGAGTTCAAAATAATTCAGTTATATGATCGACACTTTATGTCTGGACCCCCCCAAGATCAAATCCTGGTTCAGCCACTGCTTAAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

432

Amino Acids

49.75

Weight (kDa)

5.37

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4371	PF14291	8 - 103	2.9e-16	Domain of unknown function (DUF4371)
DUF4371	PF14291	107 - 190	2.2e-20	Domain of unknown function (DUF4371)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	217
AciI	CCGC	1 cut(s)	944
AclWI	GGATC	3 cut(s)	5, 1058, 1071
AcsI	RAATTY	5 cut(s)	356, 766, 847, 1121, 1178
AflII	CTTAAG	1 cut(s)	1289
AgeI	ACCGGT	1 cut(s)	1014
AjnI	CCWGG	2 cut(s)	960, 1272
AluBI	AGCT	8 cut(s)	20, 380, 650, 737, 920, 1039, 1058, 1156
AluI	AGCT	8 cut(s)	20, 380, 650, 737, 920, 1039, 1058, 1156
Alw21I	GWGCWC	1 cut(s)	922
AlwI	GGATC	3 cut(s)	5, 1058, 1071
AlwNI	CAGNNNCTG	1 cut(s)	1285
AoxI	GGCC	2 cut(s)	327, 559
ApeKI	GCWGC	2 cut(s)	980, 1156
ApoI	RAATTY	5 cut(s)	356, 766, 847, 1121, 1178
AseI	ATTAAT	1 cut(s)	345
AsiGI	ACCGGT	1 cut(s)	1014
Asp700I	GAANNNNTTC	2 cut(s)	243, 514
AspS9I	GGNCC	1 cut(s)	1253
AsuHPI	GGTGA	1 cut(s)	917
AvaII	GGWCC	1 cut(s)	1253
BamHI	GGATCC	1 cut(s)	1063
BanII	GRGCYC	1 cut(s)	922
BauI	CACGAG	1 cut(s)	381
BbsI	GAAGAC	2 cut(s)	617, 673
Bbv12I	GWGCWC	1 cut(s)	922
BbvI	GCAGC	2 cut(s)	967, 1143
BccI	CCATC	4 cut(s)	56, 243, 431, 812
BciT130I	CCWGG	2 cut(s)	962, 1274
BciVI	GTATCC	1 cut(s)	560
BfaI	CTAG	2 cut(s)	734, 1068
BfmI	CTRYAG	2 cut(s)	411, 1032
BfrI	CTTAAG	1 cut(s)	1289
BfuI	GTATCC	1 cut(s)	560
BisI	GCNGC	2 cut(s)	981, 1157
BlsI	GCNGC	2 cut(s)	982, 1158
Bme1390I	CCNGG	2 cut(s)	962, 1274
Bme18I	GGWCC	1 cut(s)	1253
BmgT120I	GGNCC	1 cut(s)	1253
BmiI	GGNNCC	2 cut(s)	1065, 1255
BmrFI	CCNGG	2 cut(s)	962, 1274
BmrI	ACTGGG	1 cut(s)	949
BmsI	GCATC	3 cut(s)	500, 628, 1087
BmuI	ACTGGG	1 cut(s)	949
BoxI	GACNNNNGTC	1 cut(s)	213
BpiI	GAAGAC	2 cut(s)	617, 673
BpuEI	CTTGAG	2 cut(s)	738, 1148
BsaAI	YACGTR	1 cut(s)	571
BsaJI	CCNNGG	3 cut(s)	486, 562, 840
BsaWI	WCCGGW	1 cut(s)	1014
Bse118I	RCCGGY	1 cut(s)	1014
Bse1I	ACTGG	1 cut(s)	944
Bse3DI	GCAATG	1 cut(s)	497
BseBI	CCWGG	2 cut(s)	962, 1274
BseDI	CCNNGG	3 cut(s)	486, 562, 840
BseGI	GGATG	2 cut(s)	665, 827
BseMI	GCAATG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	944
BseRI	GAGGAG	1 cut(s)	924
BseXI	GCAGC	2 cut(s)	967, 1143
BseYI	CCCAGC	1 cut(s)	159
BshFI	GGCC	2 cut(s)	329, 561
BshTI	ACCGGT	1 cut(s)	1014
BsiHKAI	GWGCWC	1 cut(s)	922
BsiSI	CCGG	1 cut(s)	1015
BsmI	GAATGC	3 cut(s)	127, 794, 895
BsnI	GGCC	2 cut(s)	329, 561
Bsp1286I	GDGCHC	1 cut(s)	922
Bsp143I	GATC	6 cut(s)	10, 1063, 1144, 1204, 1234, 1264
BspACI	CCGC	1 cut(s)	944
BspANI	GGCC	2 cut(s)	329, 561
BspHI	TCATGA	2 cut(s)	283, 1147
BspLI	GGNNCC	2 cut(s)	1065, 1255
BspPI	GGATC	3 cut(s)	5, 1058, 1071
BspTI	CTTAAG	1 cut(s)	1289
BsrDI	GCAATG	1 cut(s)	497
BsrFI	RCCGGY	1 cut(s)	1014
BsrI	ACTGG	1 cut(s)	944
BssAI	RCCGGY	1 cut(s)	1014
BssECI	CCNNGG	3 cut(s)	486, 562, 840
BssMI	GATC	6 cut(s)	10, 1063, 1144, 1204, 1234, 1264
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	3 cut(s)	486, 562, 840
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	2 cut(s)	962, 1274
Bst6I	CTCTTC	2 cut(s)	614, 901
BstAFI	CTTAAG	1 cut(s)	1289
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstBAI	YACGTR	1 cut(s)	571
BstC8I	GCNNGC	2 cut(s)	255, 1029
BstDEI	CTNAG	1 cut(s)	1049
BstF5I	GGATG	2 cut(s)	665, 827
BstKTI	GATC	6 cut(s)	13, 1066, 1147, 1207, 1237, 1267
BstMBI	GATC	6 cut(s)	10, 1063, 1144, 1204, 1234, 1264
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 638, 647
BstNI	CCWGG	2 cut(s)	962, 1274
BstNSI	RCATGY	2 cut(s)	867, 1031
BstPAI	GACNNNNGTC	1 cut(s)	213
BstSCI	CCNGG	2 cut(s)	960, 1272
BstSFI	CTRYAG	2 cut(s)	411, 1032
BstV1I	GCAGC	2 cut(s)	967, 1143
BstV2I	GAAGAC	2 cut(s)	617, 673
BstX2I	RGATCY	1 cut(s)	1063
BstYI	RGATCY	1 cut(s)	1063
BsuI	GTATCC	1 cut(s)	560
BsuRI	GGCC	2 cut(s)	329, 561
BtsCI	GGATG	2 cut(s)	665, 827
BtsI	GCAGTG	1 cut(s)	1283
BtsIMutI	CAGTG	2 cut(s)	525, 1283
Cac8I	GCNNGC	2 cut(s)	255, 1029
CaiI	CAGNNNCTG	1 cut(s)	1285
CciI	TCATGA	2 cut(s)	283, 1147
Cfr10I	RCCGGY	1 cut(s)	1014
Cfr13I	GGNCC	1 cut(s)	1253
CsiI	ACCWGGT	1 cut(s)	960
CspAI	ACCGGT	1 cut(s)	1014
CviAII	CATG	8 cut(s)	284, 473, 697, 772, 864, 1028, 1133, 1148
DdeI	CTNAG	1 cut(s)	1049
DpnI	GATC	6 cut(s)	12, 1065, 1146, 1206, 1236, 1266
DpnII	GATC	6 cut(s)	10, 1063, 1144, 1204, 1234, 1264
Eam1104I	CTCTTC	2 cut(s)	614, 901
EarI	CTCTTC	2 cut(s)	614, 901
Ecl136II	GAGCTC	1 cut(s)	920
Eco130I	CCWWGG	3 cut(s)	486, 562, 840
Eco24I	GRGCYC	1 cut(s)	922
Eco32I	GATATC	2 cut(s)	544, 877
Eco47I	GGWCC	1 cut(s)	1253
Eco53kI	GAGCTC	1 cut(s)	920
EcoICRI	GAGCTC	1 cut(s)	920
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	2 cut(s)	960, 1272
EcoRV	GATATC	2 cut(s)	544, 877
EcoT14I	CCWWGG	3 cut(s)	486, 562, 840
EcoT38I	GRGCYC	1 cut(s)	922
ErhI	CCWWGG	3 cut(s)	486, 562, 840
FaeI	CATG	8 cut(s)	287, 476, 700, 775, 867, 1031, 1136, 1151
FatI	CATG	8 cut(s)	283, 472, 696, 771, 863, 1027, 1132, 1147
FauNDI	CATATG	2 cut(s)	90, 1103
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	981, 1157
FokI	GGATG	2 cut(s)	652, 834
FriOI	GRGCYC	1 cut(s)	922
Fsp4HI	GCNGC	2 cut(s)	981, 1157
FspBI	CTAG	2 cut(s)	734, 1068
GluI	GCNGC	2 cut(s)	981, 1157
GsaI	CCCAGC	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	329, 561
HapII	CCGG	1 cut(s)	1015
Hin1II	CATG	8 cut(s)	287, 476, 700, 775, 867, 1031, 1136, 1151
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	1015
HphI	GGTGA	1 cut(s)	917
Hpy166II	GTNNAC	2 cut(s)	218, 430
Hpy188I	TCNGA	2 cut(s)	106, 481
Hpy8I	GTNNAC	2 cut(s)	218, 430
HpyAV	CCTTC	2 cut(s)	319, 608
HpyCH4IV	ACGT	1 cut(s)	570
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 638, 647
HpyF3I	CTNAG	1 cut(s)	1049
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	8 cut(s)	287, 476, 700, 775, 867, 1031, 1136, 1151
Kzo9I	GATC	6 cut(s)	10, 1063, 1144, 1204, 1234, 1264
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	2 cut(s)	967, 1143
LweI	GCATC	3 cut(s)	500, 628, 1087
MabI	ACCWGGT	1 cut(s)	960
MaeI	CTAG	2 cut(s)	734, 1068
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	3 cut(s)	137, 866, 923
MalI	GATC	6 cut(s)	12, 1065, 1146, 1206, 1236, 1266
MboI	GATC	6 cut(s)	10, 1063, 1144, 1204, 1234, 1264
MboII	GAAGA	7 cut(s)	61, 350, 617, 631, 673, 713, 918
MfeI	CAATTG	2 cut(s)	234, 995
MflI	RGATCY	1 cut(s)	1063
MhlI	GDGCHC	1 cut(s)	922
MlyI	GAGTC	8 cut(s)	94, 101, 141, 231, 398, 631, 665, 784
MmeI	TCCRAC	2 cut(s)	26, 883
MnlI	CCTC	8 cut(s)	25, 272, 551, 583, 793, 853, 902, 905
MroXI	GAANNNNTTC	2 cut(s)	243, 514
MseI	TTAA	5 cut(s)	345, 1007, 1020, 1200, 1290
MslI	CAYNNNNRTG	1 cut(s)	120
MspCI	CTTAAG	1 cut(s)	1289
MspI	CCGG	1 cut(s)	1015
MspR9I	CCNGG	2 cut(s)	962, 1274
MunI	CAATTG	2 cut(s)	234, 995
Mva1269I	GAATGC	3 cut(s)	127, 794, 895
MvaI	CCWGG	2 cut(s)	962, 1274
MwoI	GCNNNNNNNGC	3 cut(s)	160, 638, 647
NdeI	CATATG	2 cut(s)	90, 1103
NdeII	GATC	6 cut(s)	10, 1063, 1144, 1204, 1234, 1264
NlaIII	CATG	8 cut(s)	287, 476, 700, 775, 867, 1031, 1136, 1151
NlaIV	GGNNCC	2 cut(s)	1065, 1255
NmuCI	GTSAC	2 cut(s)	137, 923
NspI	RCATGY	2 cut(s)	867, 1031
PaeI	GCATGC	1 cut(s)	1031
PagI	TCATGA	2 cut(s)	283, 1147
PctI	GAATGC	3 cut(s)	127, 794, 895
PdmI	GAANNNNTTC	2 cut(s)	243, 514
PfeI	GAWTC	5 cut(s)	101, 299, 350, 644, 989
PinAI	ACCGGT	1 cut(s)	1014
PkrI	GCNGC	2 cut(s)	982, 1158
PleI	GAGTC	8 cut(s)	93, 101, 140, 230, 397, 630, 664, 783
PpsI	GAGTC	8 cut(s)	93, 101, 140, 230, 397, 630, 664, 783
Ppu21I	YACGTR	1 cut(s)	571
PshAI	GACNNNNGTC	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	922
Psp6I	CCWGG	2 cut(s)	960, 1272
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	2 cut(s)	960, 1272
PspN4I	GGNNCC	2 cut(s)	1065, 1255
PspPI	GGNCC	1 cut(s)	1253
PstNI	CAGNNNCTG	1 cut(s)	1285
PsuI	RGATCY	1 cut(s)	1063
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	922
SaqAI	TTAA	5 cut(s)	345, 1007, 1020, 1200, 1290
SatI	GCNGC	2 cut(s)	981, 1157
Sau3AI	GATC	6 cut(s)	10, 1063, 1144, 1204, 1234, 1264
Sau96I	GGNCC	1 cut(s)	1253
SchI	GAGTC	8 cut(s)	94, 101, 141, 231, 398, 631, 665, 784
ScrFI	CCNGG	2 cut(s)	962, 1274
SduI	GDGCHC	1 cut(s)	922
SexAI	ACCWGGT	1 cut(s)	960
SfaNI	GCATC	3 cut(s)	500, 628, 1087
SfcI	CTRYAG	2 cut(s)	411, 1032
SinI	GGWCC	1 cut(s)	1253
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	3 cut(s)	753, 1163, 1289
SmoI	CTYRAG	3 cut(s)	753, 1163, 1289
SphI	GCATGC	1 cut(s)	1031
SsiI	CCGC	1 cut(s)	944
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	2 cut(s)	734, 1068
SstI	GAGCTC	1 cut(s)	922
StyD4I	CCNGG	2 cut(s)	960, 1272
StyI	CCWWGG	3 cut(s)	486, 562, 840
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	5 cut(s)	247, 494, 556, 916, 1237
TfiI	GAWTC	5 cut(s)	101, 299, 350, 644, 989
Tru1I	TTAA	5 cut(s)	345, 1007, 1020, 1200, 1290
Tru9I	TTAA	5 cut(s)	345, 1007, 1020, 1200, 1290
TscAI	CASTG	2 cut(s)	525, 1290
TseFI	GTSAC	2 cut(s)	137, 923
TseI	GCWGC	2 cut(s)	980, 1156
Tsp45I	GTSAC	2 cut(s)	137, 923
TspRI	CASTG	2 cut(s)	525, 1290
Vha464I	CTTAAG	1 cut(s)	1289
VpaK11BI	GGWCC	1 cut(s)	1253
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	5 cut(s)	356, 766, 847, 1121, 1178
XceI	RCATGY	2 cut(s)	867, 1031
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1108, 1290
XmiI	GTMKAC	1 cut(s)	217
XmnI	GAANNNNTTC	2 cut(s)	243, 514
XspI	CTAG	2 cut(s)	734, 1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.