Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Reverse (-)

42233427 .. 42237643

Gene Structure 4217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGATAAGTTCAGGTGATCTCCAGTCACAGTGGTTCTCTCTACCCAAAGTGGGTCGCTCTGCAATTCCAAGCCCTGTTCATCTCATTGCCTCCGCCACTTCTCTCCGCCTCACCCACCACTTCCGCCTTCATTCCCTTCTCCGCTCCTATTTTCAGAAACTTGCTCATATCAGTCCCTTGCATAAACTGAAGGAAGGGTTTAACTTTACCACTATACCATTGTCAACTCGTACTTCAATTTGCTTTACTTTCTTTAATGGAAGAGACAACAGCAATGATCTCACTAATGAAGACATGCCCAACTCTAAAACGTCCACTGGAAACTCCTTCACTGGAAGACAATGGACAAATCTTCTTCTTGCTCTTAACATCATAGTTTTTATCGCACAAGTTGGCACACAAAATGACTTAATCCTATGGGGTGCTAAGATAAATAGGCTTATCGATAAAGGGCAATTGTGGAGGCTCGTCACGAGTTCCTTTTTGCACGCAAATGTTGGCCACCTCTTGGTTAACTGCTATTCTTTGAATAATGTTGGCCCTACCATGGAGAGGCTCAGTGGTTCAAAGAGATTTCTTGCGATTTACTTCACCTCTGCAATTGCAAGTTCAGCAATGAGTTATTGGTGCAGCCAGGCACCTGCGGTTGGTGCATCAGGAGCAGTCTTCGGCTTAGTGGGATCTCTTGCTGTATTTGTCATGAGGCATAGAGGTCTGGTTGGAGGTGGCAAAGAAGATCTAAAGCACATAGCATATGTAATTGTCCTAAATATGTCTATTGGGCTGTTCTCCAAAGGCATTGACAACTGGGGCCATCTGGGAGGCTTGCTTGGTGGAGCTGCCACAGCATGGCTTTTAGGACCTGCCTGGAAGTACGAATTTTCTTCCACTGACAGACGTAGGATCTTTGCTGACAAGGCTCCTATTTTCTACCTCATCAACAGGAAAACTAGATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

319

Amino Acids

35.18

Weight (kDa)

10.2

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	150 - 287	8e-38	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	649
Acc36I	ACCTGC	2 cut(s)	649, 871
AccB1I	GGYRCC	1 cut(s)	637
AccB7I	CCANNNNNTGG	2 cut(s)	508, 849
AccBSI	CCGCTC	1 cut(s)	144
AciI	CCGC	5 cut(s)	93, 106, 124, 142, 644
AclWI	GGATC	2 cut(s)	688, 911
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	878
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	2 cut(s)	232, 875
AfiI	CCNNNNNNNGG	6 cut(s)	50, 508, 547, 552, 647, 849
AgsI	TTSAA	3 cut(s)	237, 529, 567
AjnI	CCWGG	2 cut(s)	633, 866
AluBI	AGCT	1 cut(s)	839
AluI	AGCT	1 cut(s)	839
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	2 cut(s)	688, 911
AoxI	GGCC	3 cut(s)	499, 538, 811
ApeKI	GCWGC	2 cut(s)	630, 839
ApoI	RAATTY	1 cut(s)	878
AspS9I	GGNCC	3 cut(s)	539, 811, 860
AsuHPI	GGTGA	3 cut(s)	26, 103, 583
AvaII	GGWCC	1 cut(s)	860
BalI	TGGCCA	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	637
BauI	CACGAG	1 cut(s)	472
BbsI	GAAGAC	3 cut(s)	297, 343, 658
BbvI	GCAGC	2 cut(s)	642, 826
BccI	CCATC	1 cut(s)	822
BciT130I	CCWGG	2 cut(s)	635, 868
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	951
BfuAI	ACCTGC	2 cut(s)	649, 871
BglII	AGATCT	1 cut(s)	736
BisI	GCNGC	2 cut(s)	631, 840
BlsI	GCNGC	2 cut(s)	632, 841
Bme1390I	CCNGG	2 cut(s)	635, 868
Bme18I	GGWCC	1 cut(s)	860
BmgT120I	GGNCC	3 cut(s)	539, 811, 860
BmiI	GGNNCC	3 cut(s)	639, 812, 921
BmrFI	CCNGG	2 cut(s)	635, 868
BmrI	ACTGGG	1 cut(s)	817
BmsI	GCATC	1 cut(s)	662
BmuI	ACTGGG	1 cut(s)	817
BpiI	GAAGAC	3 cut(s)	297, 343, 658
BpmI	CTGGAG	1 cut(s)	5
Bsa29I	ATCGAT	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	546
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 508, 547, 552, 647, 849
Bse1I	ACTGG	4 cut(s)	22, 322, 337, 812
Bse3DI	GCAATG	3 cut(s)	84, 280, 621
BseBI	CCWGG	2 cut(s)	635, 868
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	546
BseLI	CCNNNNNNNGG	6 cut(s)	50, 508, 547, 552, 647, 849
BseMI	GCAATG	3 cut(s)	84, 280, 621
BseMII	CTCAG	1 cut(s)	571
BseNI	ACTGG	4 cut(s)	22, 322, 337, 812
BseXI	GCAGC	2 cut(s)	642, 826
BsgI	GTGCAG	1 cut(s)	649
BshFI	GGCC	3 cut(s)	501, 540, 813
BshNI	GGYRCC	1 cut(s)	637
BshVI	ATCGAT	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	6 cut(s)	50, 508, 547, 552, 647, 849
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	3 cut(s)	501, 540, 813
Bsp143I	GATC	6 cut(s)	16, 277, 680, 736, 903, 953
Bsp19I	CCATGG	1 cut(s)	546
BspACI	CCGC	5 cut(s)	93, 106, 124, 142, 644
BspANI	GGCC	3 cut(s)	501, 540, 813
BspCNI	CTCAG	1 cut(s)	570
BspDI	ATCGAT	1 cut(s)	444
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	3 cut(s)	639, 812, 921
BspMI	ACCTGC	2 cut(s)	649, 871
BspPI	GGATC	2 cut(s)	688, 911
BspT107I	GGYRCC	1 cut(s)	637
BsrBI	CCGCTC	1 cut(s)	144
BsrDI	GCAATG	3 cut(s)	84, 280, 621
BsrI	ACTGG	4 cut(s)	22, 322, 337, 812
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	6 cut(s)	16, 277, 680, 736, 903, 953
BssSI	CACGAG	1 cut(s)	472
BssT1I	CCWWGG	1 cut(s)	546
Bst2BI	CACGAG	1 cut(s)	472
Bst2UI	CCWGG	2 cut(s)	635, 868
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	489, 827
BstDEI	CTNAG	3 cut(s)	426, 557, 673
BstDSI	CCRYGG	1 cut(s)	546
BstKTI	GATC	6 cut(s)	19, 280, 683, 739, 906, 956
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	6 cut(s)	16, 277, 680, 736, 903, 953
BstMWI	GCNNNNNNNGC	5 cut(s)	611, 650, 659, 845, 917
BstNI	CCWGG	2 cut(s)	635, 868
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	633, 866
BstV1I	GCAGC	2 cut(s)	642, 826
BstV2I	GAAGAC	3 cut(s)	297, 343, 658
BstX2I	RGATCY	3 cut(s)	680, 736, 903
BstYI	RGATCY	3 cut(s)	680, 736, 903
Bsu15I	ATCGAT	1 cut(s)	444
BsuRI	GGCC	3 cut(s)	501, 540, 813
BsuTUI	ATCGAT	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	546
BtsIMutI	CAGTG	5 cut(s)	35, 315, 330, 565, 888
BveI	ACCTGC	2 cut(s)	649, 871
Cac8I	GCNNGC	2 cut(s)	489, 827
CciI	TCATGA	1 cut(s)	699
Cfr13I	GGNCC	3 cut(s)	539, 811, 860
ClaI	ATCGAT	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	231, 874
CviAII	CATG	4 cut(s)	295, 547, 700, 849
CviQI	GTAC	2 cut(s)	231, 874
DdeI	CTNAG	3 cut(s)	426, 557, 673
DpnI	GATC	6 cut(s)	18, 279, 682, 738, 905, 955
DpnII	GATC	6 cut(s)	16, 277, 680, 736, 903, 953
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
EciI	GGCGGA	3 cut(s)	82, 95, 113
Eco130I	CCWWGG	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	860
Eco57I	CTGAAG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRII	CCWGG	2 cut(s)	633, 866
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	4 cut(s)	298, 550, 703, 852
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	4 cut(s)	294, 546, 699, 848
FauNDI	CATATG	1 cut(s)	754
Fnu4HI	GCNGC	2 cut(s)	631, 840
Fsp4HI	GCNGC	2 cut(s)	631, 840
FspBI	CTAG	1 cut(s)	951
GluI	GCNGC	2 cut(s)	631, 840
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	3 cut(s)	501, 540, 813
Hin1II	CATG	4 cut(s)	298, 550, 703, 852
HincII	GTYRAC	2 cut(s)	225, 514
HindII	GTYRAC	2 cut(s)	225, 514
HpaI	GTTAAC	1 cut(s)	514
HphI	GGTGA	3 cut(s)	26, 103, 583
Hpy166II	GTNNAC	3 cut(s)	225, 315, 514
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	3 cut(s)	472, 657, 700
Hpy8I	GTNNAC	3 cut(s)	225, 315, 514
HpyAV	CCTTC	5 cut(s)	137, 146, 184, 188, 337
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	2 cut(s)	311, 898
HpyCH4V	TGCA	7 cut(s)	62, 181, 487, 599, 605, 630, 653
HpyF10VI	GCNNNNNNNGC	5 cut(s)	611, 650, 659, 845, 917
HpyF3I	CTNAG	3 cut(s)	426, 557, 673
HpySE526I	ACGT	2 cut(s)	311, 898
Hsp92II	CATG	4 cut(s)	298, 550, 703, 852
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	6 cut(s)	16, 277, 680, 736, 903, 953
LmnI	GCTCC	4 cut(s)	149, 659, 836, 925
Lsp1109I	GCAGC	2 cut(s)	642, 826
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	1 cut(s)	951
MaeII	ACGT	2 cut(s)	311, 898
MaeIII	GTNAC	2 cut(s)	24, 469
MalI	GATC	6 cut(s)	18, 279, 682, 738, 905, 955
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	6 cut(s)	16, 277, 680, 736, 903, 953
MboII	GAAGA	8 cut(s)	273, 302, 344, 347, 348, 658, 746, 876
MfeI	CAATTG	2 cut(s)	455, 600
MflI	RGATCY	3 cut(s)	680, 736, 903
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	6 cut(s)	63, 237, 455, 600, 759, 878
MluNI	TGGCCA	1 cut(s)	501
MmeI	TCCRAC	1 cut(s)	700
Mox20I	TGGCCA	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	5 cut(s)	201, 255, 366, 410, 513
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	501
MspR9I	CCNGG	2 cut(s)	635, 868
MunI	CAATTG	2 cut(s)	455, 600
MvaI	CCWGG	2 cut(s)	635, 868
MwoI	GCNNNNNNNGC	5 cut(s)	611, 650, 659, 845, 917
NcoI	CCATGG	1 cut(s)	546
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	6 cut(s)	16, 277, 680, 736, 903, 953
NlaIII	CATG	4 cut(s)	298, 550, 703, 852
NlaIV	GGNNCC	3 cut(s)	639, 812, 921
NmuCI	GTSAC	2 cut(s)	24, 469
NspI	RCATGY	1 cut(s)	298
PagI	TCATGA	1 cut(s)	699
PaqCI	CACCTGC	1 cut(s)	649
PflMI	CCANNNNNTGG	2 cut(s)	508, 849
PkrI	GCNGC	2 cut(s)	632, 841
PpuMI	RGGWCCY	1 cut(s)	860
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	2 cut(s)	633, 866
PspGI	CCWGG	2 cut(s)	633, 866
PspN4I	GGNNCC	3 cut(s)	639, 812, 921
PspPI	GGNCC	3 cut(s)	539, 811, 860
PspPPI	RGGWCCY	1 cut(s)	860
PsuI	RGATCY	3 cut(s)	680, 736, 903
RsaI	GTAC	2 cut(s)	232, 875
RsaNI	GTAC	2 cut(s)	231, 874
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	5 cut(s)	201, 255, 366, 410, 513
SatI	GCNGC	2 cut(s)	631, 840
Sau3AI	GATC	6 cut(s)	16, 277, 680, 736, 903, 953
Sau96I	GGNCC	3 cut(s)	539, 811, 860
ScrFI	CCNGG	2 cut(s)	635, 868
SfaNI	GCATC	1 cut(s)	662
SinI	GGWCC	1 cut(s)	860
SmiMI	CAYNNNNRTG	1 cut(s)	492
Sse9I	AATT	6 cut(s)	63, 237, 455, 600, 759, 878
SsiI	CCGC	5 cut(s)	93, 106, 124, 142, 644
SspMI	CTAG	1 cut(s)	951
StyD4I	CCNGG	2 cut(s)	633, 866
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	2 cut(s)	314, 901
TaqI	TCGA	1 cut(s)	444
TasI	AATT	6 cut(s)	63, 237, 455, 600, 759, 878
Tru1I	TTAA	5 cut(s)	201, 255, 366, 410, 513
Tru9I	TTAA	5 cut(s)	201, 255, 366, 410, 513
TscAI	CASTG	5 cut(s)	35, 322, 337, 565, 895
TseFI	GTSAC	2 cut(s)	24, 469
TseI	GCWGC	2 cut(s)	630, 839
Tsp45I	GTSAC	2 cut(s)	24, 469
TspDTI	ATGAA	3 cut(s)	68, 119, 303
TspRI	CASTG	5 cut(s)	35, 322, 337, 565, 895
Van91I	CCANNNNNTGG	2 cut(s)	508, 849
VpaK11BI	GGWCC	1 cut(s)	860
XapI	RAATTY	1 cut(s)	878
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.