Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Reverse (-)

46466582 .. 46470565

Gene Structure 3984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG369700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTTGGGATGATAAGTTCAGGTGATCTCCAGTCACAGTGGTTCTCTCTACCCAAAGTGGGTCGCTCTGCAATTCCAAGCCCCATTCATCTCATTGCCTCCGCCACTTCTCTCCGCCTCACCCACCACTTTCTCCGCTCCTATTTTCAGAAACTTGCTCATATCAGTCCTTTGCATAAATTGAAGGAAGGGTTTAACACTATACCATTGTCAACTCATACTTCAATTTGCTTTGCTTTCTTTAATGGAAGAGACAACAGCAATGATCTCACAAATGAAGACATGCCCAACTCTAAAACGTCCACTACAAACTTGTTCACTGGAAAACAATGGACAAATCTTCTCCTTGCTCTTAACATCATAGTTTATATCGCGCAAGTTGGGACACAAAATGACTTAATCCTATGGGGTGCCAAGATAAATAGGCTTATCGATAAAGGGCAATTGTGGAGGCTCGTCACGAGTTCCTTTTTGCACGCAAATGTTGGCCACCTCTTGGTTAATTGCTATTCTTTGAATAATGTTGGCCCTACCATGGAGAGGCTCAGTGGTCCAAAGAGATTTCTTGCGATTTACTTCACCTCTGCAATTGCAAGTTCAGCAATGAGTTATTGGTGCAGCCAAGCACCTGCGGTTGGTGCATCAGGAGCAGTCTTCGGCTTAGACTGGAGTCTTCCACCCGATCTCCGACTCTCACCGATCCGCCGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

237

Amino Acids

26.25

Weight (kDa)

9.79

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	146 - 221	9.6e-24	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	637
AccB1I	GGYRCC	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	496
AccBSI	CCGCTC	1 cut(s)	138
AccII	CGCG	1 cut(s)	374
AciI	CCGC	6 cut(s)	102, 115, 136, 632, 703, 706
AclWI	GGATC	1 cut(s)	694
AcoI	YGGCCR	1 cut(s)	487
AfiI	CCNNNNNNNGG	5 cut(s)	59, 496, 535, 540, 635
AgsI	TTSAA	3 cut(s)	184, 225, 517
AloI	GAACNNNNNNTCC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	694
AoxI	GGCC	2 cut(s)	487, 526
ApeKI	GCWGC	1 cut(s)	618
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	527, 551
AsuHPI	GGTGA	4 cut(s)	35, 112, 571, 687
AvaII	GGWCC	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	460
BbsI	GAAGAC	3 cut(s)	285, 646, 665
BbvI	GCAGC	1 cut(s)	630
BcoDI	GTCTC	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	2 cut(s)	619, 706
BlsI	GCNGC	2 cut(s)	620, 707
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	2 cut(s)	527, 551
BmiI	GGNNCC	1 cut(s)	412
BmsI	GCATC	1 cut(s)	650
BoxI	GACNNNNGTC	1 cut(s)	669
BpiI	GAAGAC	3 cut(s)	285, 646, 665
BpmI	CTGGAG	2 cut(s)	14, 688
Bsa29I	ATCGAT	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 496, 535, 540, 635
Bse1I	ACTGG	3 cut(s)	31, 325, 671
Bse3DI	GCAATG	3 cut(s)	93, 268, 609
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	5 cut(s)	59, 496, 535, 540, 635
BseMI	GCAATG	3 cut(s)	93, 268, 609
BseMII	CTCAG	1 cut(s)	559
BseNI	ACTGG	3 cut(s)	31, 325, 671
BseXI	GCAGC	1 cut(s)	630
BsgI	GTGCAG	1 cut(s)	637
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	2 cut(s)	489, 528
BshNI	GGYRCC	1 cut(s)	410
BshVI	ATCGAT	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	5 cut(s)	59, 496, 535, 540, 635
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	489, 528
Bsp143I	GATC	4 cut(s)	25, 265, 682, 699
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	6 cut(s)	102, 115, 136, 632, 703, 706
BspANI	GGCC	2 cut(s)	489, 528
BspCNI	CTCAG	1 cut(s)	558
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	1 cut(s)	694
BspT107I	GGYRCC	1 cut(s)	410
BsrBI	CCGCTC	1 cut(s)	138
BsrDI	GCAATG	3 cut(s)	93, 268, 609
BsrI	ACTGG	3 cut(s)	31, 325, 671
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	4 cut(s)	25, 265, 682, 699
BssSI	CACGAG	1 cut(s)	460
BssT1I	CCWWGG	1 cut(s)	534
Bst2BI	CACGAG	1 cut(s)	460
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	545, 661
BstDSI	CCRYGG	1 cut(s)	534
BstF5I	GGATG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	4 cut(s)	28, 268, 685, 702
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	4 cut(s)	25, 265, 682, 699
BstMWI	GCNNNNNNNGC	3 cut(s)	599, 638, 647
BstNSI	RCATGY	1 cut(s)	286
BstPAI	GACNNNNGTC	1 cut(s)	669
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	630
BstV2I	GAAGAC	3 cut(s)	285, 646, 665
Bsu15I	ATCGAT	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	489, 528
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	534
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	3 cut(s)	44, 318, 553
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	2 cut(s)	527, 551
ClaI	ATCGAT	1 cut(s)	432
CviAII	CATG	2 cut(s)	283, 535
CviJI	RGCY	8 cut(s)	81, 427, 454, 489, 528, 544, 621, 660
CviKI_1	RGCY	8 cut(s)	81, 427, 454, 489, 528, 544, 621, 660
DdeI	CTNAG	2 cut(s)	545, 661
DpnI	GATC	4 cut(s)	27, 267, 684, 701
DpnII	GATC	4 cut(s)	25, 265, 682, 699
EaeI	YGGCCR	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
EciI	GGCGGA	3 cut(s)	91, 104, 692
Eco130I	CCWWGG	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	551
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	2 cut(s)	286, 538
FaiI	YATR	9 cut(s)	162, 177, 203, 219, 284, 362, 369, 406, 536
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	2 cut(s)	282, 534
Fnu4HI	GCNGC	2 cut(s)	619, 706
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	619, 706
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	2 cut(s)	619, 706
GsuI	CTGGAG	2 cut(s)	14, 688
HaeIII	GGCC	2 cut(s)	489, 528
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	2 cut(s)	286, 538
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	2 cut(s)	670, 690
HphI	GGTGA	4 cut(s)	35, 112, 571, 687
Hpy166II	GTNNAC	3 cut(s)	213, 303, 318
Hpy188I	TCNGA	3 cut(s)	150, 689, 713
Hpy188III	TCNNGA	2 cut(s)	460, 645
Hpy8I	GTNNAC	3 cut(s)	213, 303, 318
HpyAV	CCTTC	2 cut(s)	178, 182
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	7 cut(s)	71, 175, 475, 587, 593, 618, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	599, 638, 647
HpyF3I	CTNAG	2 cut(s)	545, 661
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	2 cut(s)	286, 538
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	4 cut(s)	25, 265, 682, 699
LmnI	GCTCC	2 cut(s)	143, 647
LpnPI	CCDG	6 cut(s)	6, 44, 306, 630, 642, 652
Lsp1109I	GCAGC	1 cut(s)	630
LweI	GCATC	1 cut(s)	650
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	33, 457
MalI	GATC	4 cut(s)	27, 267, 684, 701
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	4 cut(s)	25, 265, 682, 699
MboII	GAAGA	5 cut(s)	261, 290, 332, 646, 665
MfeI	CAATTG	2 cut(s)	443, 588
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	6 cut(s)	72, 179, 225, 443, 502, 588
MluNI	TGGCCA	1 cut(s)	489
MlyI	GAGTC	2 cut(s)	679, 684
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	6 cut(s)	109, 128, 444, 503, 534, 592
Mox20I	TGGCCA	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	5 cut(s)	195, 243, 354, 398, 501
MslI	CAYNNNNRTG	1 cut(s)	480
Msp20I	TGGCCA	1 cut(s)	489
MunI	CAATTG	2 cut(s)	443, 588
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	3 cut(s)	599, 638, 647
NcoI	CCATGG	1 cut(s)	534
NdeII	GATC	4 cut(s)	25, 265, 682, 699
NlaIII	CATG	2 cut(s)	286, 538
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	2 cut(s)	33, 457
NspI	RCATGY	1 cut(s)	286
PaqCI	CACCTGC	1 cut(s)	637
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	620, 707
PleI	GAGTC	2 cut(s)	678, 684
PpsI	GAGTC	2 cut(s)	678, 684
PshAI	GACNNNNGTC	1 cut(s)	669
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	2 cut(s)	527, 551
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	5 cut(s)	195, 243, 354, 398, 501
SatI	GCNGC	2 cut(s)	619, 706
Sau3AI	GATC	4 cut(s)	25, 265, 682, 699
Sau96I	GGNCC	2 cut(s)	527, 551
SchI	GAGTC	2 cut(s)	679, 684
SetI	ASST	5 cut(s)	25, 302, 495, 584, 631
SfaNI	GCATC	1 cut(s)	650
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	480
Sse9I	AATT	6 cut(s)	72, 179, 225, 443, 502, 588
SsiI	CCGC	6 cut(s)	102, 115, 136, 632, 703, 706
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	432
TasI	AATT	6 cut(s)	72, 179, 225, 443, 502, 588
TauI	GCSGC	1 cut(s)	708
Tru1I	TTAA	5 cut(s)	195, 243, 354, 398, 501
Tru9I	TTAA	5 cut(s)	195, 243, 354, 398, 501
TscAI	CASTG	3 cut(s)	44, 325, 553
TseFI	GTSAC	2 cut(s)	33, 457
TseI	GCWGC	1 cut(s)	618
Tsp45I	GTSAC	2 cut(s)	33, 457
TspDTI	ATGAA	2 cut(s)	77, 291
TspRI	CASTG	3 cut(s)	44, 325, 553
Van91I	CCANNNNNTGG	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	551
XceI	RCATGY	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.