Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Forward (+)

52405476 .. 52408529

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1422300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGATCAGATCAGGTGAGCTTCAGGCGCAATGGTTCTCCTTCCCCAGAGCGGGTCCCACTCCAAACCCCATACATCATCACCTCACCGCCGCCGCTTCTCTCCGCCTCAGTCACCACATCTTCCACCACCACCACTTCCGCCTCCGCTCCATTTTCCATTCCTACTTTCAGAAACTTGCCCATCATAGTCCCCTGCACGGATTGAAGGAAGGATTTAACTTTCTGCCATTGCCAAGTAGCAATGCTTCAGCTTCTGCTTGCTTTAGTTTCTTTGGTGGAGGAGGAGGAGAAACTAGCGATGATTCCCCAAATGAAGGGCAAATTTCTAGGTTTTCCACTAAAAGCTTCTTCAATGGAAGACAATGGACTAATGTCCTCCTTGCTCTTAACATCTTAGTTTATATTGCGCAATGTGCAACGCAAGATGAGTTACTTCTATGGGGAGCCAAGATAAATAGCCTCATCGACAAAGGGCAATTGTGGAGGCTCGTTACATCGTCCTTTTTGCATGCAAATATCGGGCACCTCTTGGTTAATTGTTATTCTTTGAATTCAGTTGGTCCTACCATGGAGAAGATTAGTGGTCCTAAGAGATATCTTGCACTCTACTTTGCCTCAGCAATTGCAAGTTCAGCGATGAGTTATGGGTTCAGTGAGGCACCTGCAGTTGGTGCATCAGGAGCAGTCTTCGGATTAGTTGGATCTCTTGCTGTGTTTGTCATGAGACATAGAGGTTTGGTTGGACGTGGCAAAGAAGATCTGCAGCAGATAGCACACGTGATTGTCCTGAATATGGCTATTGGTTTCTTCTTCAAAGGCATTGATAACTGGGGACATTTTGGAGGCTTGCTTGGTGGAGTTGCCACATCCTGGCTTCTAGGACCTGCATGGAAGTACGAATCTCCATCCGCTGACGGGCGAAGAATTTTTTCTGACAAGGCTCCTATTTTCTACCTCATCAACACAAAAAAGAAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

327

Amino Acids

35.73

Weight (kDa)

9.71

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	157 - 294	4.7e-37	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
Acc16I	TGCGCA	1 cut(s)	408
Acc36I	ACCTGC	2 cut(s)	670, 892
AccB1I	GGYRCC	2 cut(s)	522, 658
AccB7I	CCANNNNNTGG	1 cut(s)	870
AccBSI	CCGCTC	2 cut(s)	50, 147
AciI	CCGC	8 cut(s)	50, 87, 90, 93, 103, 139, 145, 909
AclWI	GGATC	1 cut(s)	709
AcsI	RAATTY	3 cut(s)	321, 550, 924
AcuI	CTGAAG	2 cut(s)	5, 231
AcvI	CACGTG	1 cut(s)	778
AfaI	GTAC	1 cut(s)	896
AfiI	CCNNNNNNNGG	8 cut(s)	49, 50, 197, 314, 668, 793, 870, 915
AflIII	ACRYGT	1 cut(s)	775
AgsI	TTSAA	4 cut(s)	205, 352, 550, 814
AjiI	CACGTC	1 cut(s)	746
AjnI	CCWGG	1 cut(s)	869
AluBI	AGCT	3 cut(s)	19, 251, 345
AluI	AGCT	3 cut(s)	19, 251, 345
Alw26I	GTCTC	1 cut(s)	718
AlwI	GGATC	1 cut(s)	709
AlwNI	CAGNNNCTG	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	763
ApoI	RAATTY	3 cut(s)	321, 550, 924
Asp700I	GAANNNNTTC	1 cut(s)	928
AspLEI	GCGC	2 cut(s)	28, 409
AspS9I	GGNCC	4 cut(s)	53, 560, 584, 881
AsuHPI	GGTGA	4 cut(s)	26, 71, 76, 104
AvaII	GGWCC	4 cut(s)	53, 560, 584, 881
BaeGI	GKGCMC	1 cut(s)	525
BanI	GGYRCC	2 cut(s)	522, 658
BarI	GAAGNNNNNNTAC	2 cut(s)	229, 261
BbrPI	CACGTG	1 cut(s)	778
BbsI	GAAGAC	2 cut(s)	364, 679
BbvCI	CCTCAGC	1 cut(s)	616
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	2 cut(s)	189, 913
BciT130I	CCWGG	1 cut(s)	871
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	718
BfaI	CTAG	3 cut(s)	294, 327, 878
BfmI	CTRYAG	2 cut(s)	663, 761
BfuAI	ACCTGC	2 cut(s)	670, 892
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	3 cut(s)	90, 93, 764
BlsI	GCNGC	3 cut(s)	91, 94, 765
Bme1390I	CCNGG	1 cut(s)	871
Bme18I	GGWCC	4 cut(s)	53, 560, 584, 881
BmgBI	CACGTC	1 cut(s)	746
BmgT120I	GGNCC	4 cut(s)	53, 560, 584, 881
BmiI	GGNNCC	6 cut(s)	54, 55, 445, 524, 660, 942
BmrFI	CCNGG	1 cut(s)	871
BmrI	ACTGGG	1 cut(s)	838
BmsI	GCATC	1 cut(s)	683
BmuI	ACTGGG	1 cut(s)	838
BoxI	GACNNNNGTC	1 cut(s)	371
BpiI	GAAGAC	2 cut(s)	364, 679
Bpu10I	CCTNAGC	1 cut(s)	616
BsaAI	YACGTR	1 cut(s)	778
BsaJI	CCNNGG	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	8 cut(s)	49, 50, 197, 314, 668, 793, 870, 915
Bse1I	ACTGG	1 cut(s)	833
Bse3DI	GCAATG	4 cut(s)	35, 227, 247, 416
BseBI	CCWGG	1 cut(s)	871
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	2 cut(s)	866, 905
BseLI	CCNNNNNNNGG	8 cut(s)	49, 50, 197, 314, 668, 793, 870, 915
BseMI	GCAATG	4 cut(s)	35, 227, 247, 416
BseMII	CTCAG	2 cut(s)	121, 630
BseNI	ACTGG	1 cut(s)	833
BseRI	GAGGAG	3 cut(s)	294, 297, 300
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	1 cut(s)	775
BsgI	GTGCAG	1 cut(s)	179
BshNI	GGYRCC	2 cut(s)	522, 658
BslFI	GGGAC	3 cut(s)	39, 174, 846
BslI	CCNNNNNNNGG	8 cut(s)	49, 50, 197, 314, 668, 793, 870, 915
BsmAI	GTCTC	1 cut(s)	718
BsmFI	GGGAC	3 cut(s)	39, 174, 846
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	4 cut(s)	3, 8, 701, 757
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	8 cut(s)	50, 87, 90, 93, 103, 139, 145, 909
BspCNI	CTCAG	2 cut(s)	120, 629
BspHI	TCATGA	1 cut(s)	720
BspLI	GGNNCC	6 cut(s)	54, 55, 445, 524, 660, 942
BspMAI	CTGCAG	2 cut(s)	667, 765
BspMI	ACCTGC	2 cut(s)	670, 892
BspPI	GGATC	1 cut(s)	709
BspT107I	GGYRCC	2 cut(s)	522, 658
BsrBI	CCGCTC	2 cut(s)	50, 147
BsrDI	GCAATG	4 cut(s)	35, 227, 247, 416
BsrI	ACTGG	1 cut(s)	833
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	4 cut(s)	3, 8, 701, 757
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	871
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstBAI	YACGTR	1 cut(s)	778
BstC8I	GCNNGC	3 cut(s)	259, 510, 848
BstDEI	CTNAG	4 cut(s)	107, 394, 588, 616
BstDSI	CCRYGG	1 cut(s)	567
BstF5I	GGATG	2 cut(s)	866, 905
BstHHI	GCGC	2 cut(s)	28, 409
BstKTI	GATC	4 cut(s)	6, 11, 704, 760
BstMAI	GTCTC	1 cut(s)	718
BstMBI	GATC	4 cut(s)	3, 8, 701, 757
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 413, 632, 671, 680
BstNI	CCWGG	1 cut(s)	871
BstNSI	RCATGY	1 cut(s)	512
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	869
BstSFI	CTRYAG	2 cut(s)	663, 761
BstSLI	GKGCMC	1 cut(s)	525
BstV1I	GCAGC	1 cut(s)	775
BstV2I	GAAGAC	2 cut(s)	364, 679
BstX2I	RGATCY	2 cut(s)	701, 757
BstYI	RGATCY	2 cut(s)	701, 757
BtgI	CCRYGG	1 cut(s)	567
BtgZI	GCGATG	2 cut(s)	312, 650
BtrI	CACGTC	1 cut(s)	746
BtsCI	GGATG	2 cut(s)	866, 905
BtsIMutI	CAGTG	1 cut(s)	658
BveI	ACCTGC	2 cut(s)	670, 892
Cac8I	GCNNGC	3 cut(s)	259, 510, 848
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	720
CfoI	GCGC	2 cut(s)	28, 409
Cfr13I	GGNCC	4 cut(s)	53, 560, 584, 881
Csp6I	GTAC	1 cut(s)	895
CviAII	CATG	4 cut(s)	509, 568, 721, 888
CviQI	GTAC	1 cut(s)	895
DdeI	CTNAG	4 cut(s)	107, 394, 588, 616
DpnI	GATC	4 cut(s)	5, 10, 703, 759
DpnII	GATC	4 cut(s)	3, 8, 701, 757
EciI	GGCGGA	2 cut(s)	92, 128
Eco130I	CCWWGG	1 cut(s)	567
Eco32I	GATATC	1 cut(s)	596
Eco47I	GGWCC	4 cut(s)	53, 560, 584, 881
Eco57I	CTGAAG	2 cut(s)	5, 231
Eco72I	CACGTG	1 cut(s)	778
EcoO109I	RGGNCCY	2 cut(s)	53, 881
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	869
EcoRV	GATATC	1 cut(s)	596
EcoT14I	CCWWGG	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	4 cut(s)	512, 571, 724, 891
FaqI	GGGAC	3 cut(s)	39, 174, 846
FatI	CATG	4 cut(s)	508, 567, 720, 887
FauI	CCCGC	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	90, 93, 764
FokI	GGATG	2 cut(s)	853, 892
Fsp4HI	GCNGC	3 cut(s)	90, 93, 764
FspBI	CTAG	3 cut(s)	294, 327, 878
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	2 cut(s)	27, 408
GluI	GCNGC	3 cut(s)	90, 93, 764
HhaI	GCGC	2 cut(s)	28, 409
Hin1II	CATG	4 cut(s)	512, 571, 724, 891
Hin6I	GCGC	2 cut(s)	26, 407
HinP1I	GCGC	2 cut(s)	26, 407
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	2 cut(s)	302, 899
HphI	GGTGA	4 cut(s)	26, 71, 76, 104
Hpy188I	TCNGA	4 cut(s)	8, 171, 692, 934
Hpy188III	TCNNGA	3 cut(s)	678, 721, 787
HpyAV	CCTTC	4 cut(s)	49, 199, 203, 308
HpyCH4IV	ACGT	2 cut(s)	745, 777
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 413, 632, 671, 680
HpyF3I	CTNAG	4 cut(s)	107, 394, 588, 616
HpySE526I	ACGT	2 cut(s)	745, 777
Hsp92II	CATG	4 cut(s)	512, 571, 724, 891
HspAI	GCGC	2 cut(s)	26, 407
KflI	GGGWCCC	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 8, 701, 757
LmnI	GCTCC	4 cut(s)	152, 443, 680, 946
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	1 cut(s)	683
MaeI	CTAG	3 cut(s)	294, 327, 878
MaeII	ACGT	2 cut(s)	745, 777
MaeIII	GTNAC	3 cut(s)	110, 429, 490
MalI	GATC	4 cut(s)	5, 10, 703, 759
MbiI	CCGCTC	2 cut(s)	50, 147
MboI	GATC	4 cut(s)	3, 8, 701, 757
MboII	GAAGA	9 cut(s)	112, 340, 369, 586, 679, 767, 799, 802, 933
MfeI	CAATTG	2 cut(s)	476, 621
MflI	RGATCY	2 cut(s)	701, 757
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	6 cut(s)	321, 476, 535, 550, 621, 924
MmeI	TCCRAC	2 cut(s)	679, 721
MroXI	GAANNNNTTC	1 cut(s)	928
MseI	TTAA	3 cut(s)	216, 387, 534
MspA1I	CMGCKG	1 cut(s)	911
MspR9I	CCNGG	1 cut(s)	871
MunI	CAATTG	2 cut(s)	476, 621
MvaI	CCWGG	1 cut(s)	871
MwoI	GCNNNNNNNGC	5 cut(s)	25, 413, 632, 671, 680
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	4 cut(s)	3, 8, 701, 757
NlaIII	CATG	4 cut(s)	512, 571, 724, 891
NlaIV	GGNNCC	6 cut(s)	54, 55, 445, 524, 660, 942
NmuCI	GTSAC	1 cut(s)	110
NsbI	TGCGCA	1 cut(s)	408
NspI	RCATGY	1 cut(s)	512
PaeI	GCATGC	1 cut(s)	512
PagI	TCATGA	1 cut(s)	720
PaqCI	CACCTGC	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	928
PfeI	GAWTC	2 cut(s)	302, 899
PflMI	CCANNNNNTGG	1 cut(s)	870
PkrI	GCNGC	3 cut(s)	91, 94, 765
PmaCI	CACGTG	1 cut(s)	778
PmlI	CACGTG	1 cut(s)	778
Ppu21I	YACGTR	1 cut(s)	778
PpuMI	RGGWCCY	2 cut(s)	53, 881
PshAI	GACNNNNGTC	1 cut(s)	371
Psp5II	RGGWCCY	2 cut(s)	53, 881
Psp6I	CCWGG	1 cut(s)	869
PspCI	CACGTG	1 cut(s)	778
PspGI	CCWGG	1 cut(s)	869
PspN4I	GGNNCC	6 cut(s)	54, 55, 445, 524, 660, 942
PspPI	GGNCC	4 cut(s)	53, 560, 584, 881
PspPPI	RGGWCCY	2 cut(s)	53, 881
PstI	CTGCAG	2 cut(s)	667, 765
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	701, 757
RsaI	GTAC	1 cut(s)	896
RsaNI	GTAC	1 cut(s)	895
SaqAI	TTAA	3 cut(s)	216, 387, 534
SatI	GCNGC	3 cut(s)	90, 93, 764
Sau3AI	GATC	4 cut(s)	3, 8, 701, 757
Sau96I	GGNCC	4 cut(s)	53, 560, 584, 881
ScrFI	CCNGG	1 cut(s)	871
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	1 cut(s)	683
SfcI	CTRYAG	2 cut(s)	663, 761
SinI	GGWCC	4 cut(s)	53, 560, 584, 881
SphI	GCATGC	1 cut(s)	512
Sse9I	AATT	6 cut(s)	321, 476, 535, 550, 621, 924
SsiI	CCGC	8 cut(s)	50, 87, 90, 93, 103, 139, 145, 909
SspMI	CTAG	3 cut(s)	294, 327, 878
StyD4I	CCNGG	1 cut(s)	869
StyI	CCWWGG	1 cut(s)	567
TaiI	ACGT	2 cut(s)	748, 780
TaqI	TCGA	1 cut(s)	465
TasI	AATT	6 cut(s)	321, 476, 535, 550, 621, 924
TauI	GCSGC	2 cut(s)	92, 95
TfiI	GAWTC	2 cut(s)	302, 899
Tru1I	TTAA	3 cut(s)	216, 387, 534
Tru9I	TTAA	3 cut(s)	216, 387, 534
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	763
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	658
Van91I	CCANNNNNTGG	1 cut(s)	870
VpaK11BI	GGWCC	4 cut(s)	53, 560, 584, 881
XapI	RAATTY	3 cut(s)	321, 550, 924
XceI	RCATGY	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	928
XspI	CTAG	3 cut(s)	294, 327, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.