Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000146.1

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Reverse (-)

123629 .. 127792

Gene Structure 4164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000146.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgatgagttcaggtgatctccagtcacagtggttctctctacccaaagtgggtcgctctgcaattccaagccccgttcatctcattgcctccgccacttctctccgcctcacccaccacttccgccttcattcccttctccgctcctattttcagaaacttgctcatatcagtcccttgcataaattgaaggaagggtttcacactataccattgtcaactcatacttcaatttgctttgctttctttaatggaagagacaacagcaatgatctcacaaatgaagacatgcccaactctaaaacgtccactacaaacttgttcactggaagacaatggacaaatcttctccttgctcttaacatcatagtttatatcgcgcaagttgggacacaaaatgacttaatcctatggggtgccaagataaataggcttatcgataaagggcaattgtggaggctcgtcacgagttcctttttgcacgcaaatgttggccacctcttggttaattgctattctttgaataatgttggccctaccatggagaggctcagtggttcaaagagatttcttgcgatttacttcacctctgcagttgcaagttcagcaatgagttattggtgcagccaggcacctgcagttggtgcatcaggagcagtcttcggcttagtgggatctcttgctgtatttgtcatgaggcatagaggtctggttggaggtggcaaagaagatctaaagcacatagcatatgtaattgtcctaaatatgtctattgggctgttctccaaaggcattgacaactggggccatctgggaggcttgcttggtggagctgccacagcatggcttttaggacctgcctggaagtacgaattttcttccactgacagacgaaggatctttgctgacaaggctcctattttctacctcatcaacaggaaaagtagatcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

317

Amino Acids

34.98

Weight (kDa)

10.08

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	643
Acc36I	ACCTGC	2 cut(s)	643, 865
AccB1I	GGYRCC	2 cut(s)	416, 631
AccB7I	CCANNNNNTGG	2 cut(s)	502, 843
AccBSI	CCGCTC	1 cut(s)	144
AccII	CGCG	1 cut(s)	380
AciI	CCGC	4 cut(s)	93, 106, 124, 142
AclWI	GGATC	2 cut(s)	682, 905
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	872
AfaI	GTAC	1 cut(s)	869
AfiI	CCNNNNNNNGG	6 cut(s)	50, 502, 541, 546, 641, 843
AgsI	TTSAA	4 cut(s)	190, 231, 523, 561
AjnI	CCWGG	2 cut(s)	627, 860
AluBI	AGCT	1 cut(s)	833
AluI	AGCT	1 cut(s)	833
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	682, 905
AoxI	GGCC	3 cut(s)	493, 532, 805
ApeKI	GCWGC	2 cut(s)	624, 833
ApoI	RAATTY	1 cut(s)	872
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	3 cut(s)	533, 805, 854
AsuHPI	GGTGA	3 cut(s)	26, 103, 577
AvaII	GGWCC	1 cut(s)	854
BalI	TGGCCA	1 cut(s)	495
BanI	GGYRCC	2 cut(s)	416, 631
BauI	CACGAG	1 cut(s)	466
BbsI	GAAGAC	3 cut(s)	291, 337, 652
BbvI	GCAGC	2 cut(s)	636, 820
BccI	CCATC	1 cut(s)	816
BciT130I	CCWGG	2 cut(s)	629, 862
BcoDI	GTCTC	1 cut(s)	252
BfmI	CTRYAG	2 cut(s)	591, 636
BfuAI	ACCTGC	2 cut(s)	643, 865
BglII	AGATCT	1 cut(s)	730
BisI	GCNGC	2 cut(s)	625, 834
BlsI	GCNGC	2 cut(s)	626, 835
Bme1390I	CCNGG	2 cut(s)	629, 862
Bme18I	GGWCC	1 cut(s)	854
BmgT120I	GGNCC	3 cut(s)	533, 805, 854
BmiI	GGNNCC	4 cut(s)	418, 633, 806, 915
BmrFI	CCNGG	2 cut(s)	629, 862
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	811
BpiI	GAAGAC	3 cut(s)	291, 337, 652
BpmI	CTGGAG	1 cut(s)	5
Bsa29I	ATCGAT	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 502, 541, 546, 641, 843
Bse1I	ACTGG	3 cut(s)	22, 331, 806
Bse3DI	GCAATG	3 cut(s)	84, 274, 615
BseBI	CCWGG	2 cut(s)	629, 862
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	540
BseLI	CCNNNNNNNGG	6 cut(s)	50, 502, 541, 546, 641, 843
BseMI	GCAATG	3 cut(s)	84, 274, 615
BseMII	CTCAG	1 cut(s)	565
BseNI	ACTGG	3 cut(s)	22, 331, 806
BseXI	GCAGC	2 cut(s)	636, 820
BsgI	GTGCAG	1 cut(s)	643
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	3 cut(s)	495, 534, 807
BshNI	GGYRCC	2 cut(s)	416, 631
BshVI	ATCGAT	1 cut(s)	438
BslFI	GGGAC	2 cut(s)	159, 403
BslI	CCNNNNNNNGG	6 cut(s)	50, 502, 541, 546, 641, 843
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	159, 403
BsnI	GGCC	3 cut(s)	495, 534, 807
Bsp143I	GATC	6 cut(s)	16, 271, 674, 730, 897, 947
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	4 cut(s)	93, 106, 124, 142
BspANI	GGCC	3 cut(s)	495, 534, 807
BspCNI	CTCAG	1 cut(s)	564
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	380
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	4 cut(s)	418, 633, 806, 915
BspMAI	CTGCAG	2 cut(s)	595, 640
BspMI	ACCTGC	2 cut(s)	643, 865
BspPI	GGATC	2 cut(s)	682, 905
BspT107I	GGYRCC	2 cut(s)	416, 631
BsrBI	CCGCTC	1 cut(s)	144
BsrDI	GCAATG	3 cut(s)	84, 274, 615
BsrI	ACTGG	3 cut(s)	22, 331, 806
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	6 cut(s)	16, 271, 674, 730, 897, 947
BssSI	CACGAG	1 cut(s)	466
BssT1I	CCWWGG	1 cut(s)	540
Bst2BI	CACGAG	1 cut(s)	466
Bst2UI	CCWGG	2 cut(s)	629, 862
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	483, 821
BstDEI	CTNAG	2 cut(s)	551, 667
BstDSI	CCRYGG	1 cut(s)	540
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	6 cut(s)	19, 274, 677, 733, 900, 950
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	6 cut(s)	16, 271, 674, 730, 897, 947
BstMWI	GCNNNNNNNGC	5 cut(s)	605, 644, 653, 839, 911
BstNI	CCWGG	2 cut(s)	629, 862
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	627, 860
BstSFI	CTRYAG	2 cut(s)	591, 636
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	636, 820
BstV2I	GAAGAC	3 cut(s)	291, 337, 652
BstX2I	RGATCY	3 cut(s)	674, 730, 897
BstYI	RGATCY	3 cut(s)	674, 730, 897
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	495, 534, 807
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	540
BtsIMutI	CAGTG	4 cut(s)	35, 324, 559, 882
BveI	ACCTGC	2 cut(s)	643, 865
Cac8I	GCNNGC	2 cut(s)	483, 821
CciI	TCATGA	1 cut(s)	693
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	3 cut(s)	533, 805, 854
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	868
CviAII	CATG	4 cut(s)	289, 541, 694, 843
CviQI	GTAC	1 cut(s)	868
DdeI	CTNAG	2 cut(s)	551, 667
DpnI	GATC	6 cut(s)	18, 273, 676, 732, 899, 949
DpnII	GATC	6 cut(s)	16, 271, 674, 730, 897, 947
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
EciI	GGCGGA	3 cut(s)	82, 95, 113
Eco130I	CCWWGG	1 cut(s)	540
Eco47I	GGWCC	1 cut(s)	854
EcoO109I	RGGNCCY	1 cut(s)	854
EcoRII	CCWGG	2 cut(s)	627, 860
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	4 cut(s)	292, 544, 697, 846
FaqI	GGGAC	2 cut(s)	159, 403
FatI	CATG	4 cut(s)	288, 540, 693, 842
FauNDI	CATATG	1 cut(s)	748
Fnu4HI	GCNGC	2 cut(s)	625, 834
Fsp4HI	GCNGC	2 cut(s)	625, 834
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	2 cut(s)	625, 834
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	3 cut(s)	495, 534, 807
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	4 cut(s)	292, 544, 697, 846
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HphI	GGTGA	3 cut(s)	26, 103, 577
Hpy166II	GTNNAC	3 cut(s)	219, 309, 324
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	3 cut(s)	466, 651, 694
Hpy8I	GTNNAC	3 cut(s)	219, 309, 324
HpyAV	CCTTC	5 cut(s)	137, 146, 184, 188, 888
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	8 cut(s)	62, 181, 481, 593, 599, 624, 638, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	605, 644, 653, 839, 911
HpyF3I	CTNAG	2 cut(s)	551, 667
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	4 cut(s)	292, 544, 697, 846
HspAI	GCGC	1 cut(s)	380
Kzo9I	GATC	6 cut(s)	16, 271, 674, 730, 897, 947
LmnI	GCTCC	4 cut(s)	149, 653, 830, 919
Lsp1109I	GCAGC	2 cut(s)	636, 820
LweI	GCATC	1 cut(s)	656
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	24, 463
MalI	GATC	6 cut(s)	18, 273, 676, 732, 899, 949
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	6 cut(s)	16, 271, 674, 730, 897, 947
MboII	GAAGA	7 cut(s)	267, 296, 338, 342, 652, 740, 870
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	3 cut(s)	674, 730, 897
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	7 cut(s)	63, 185, 231, 449, 508, 753, 872
MluNI	TGGCCA	1 cut(s)	495
MmeI	TCCRAC	1 cut(s)	694
Mox20I	TGGCCA	1 cut(s)	495
MroXI	GAANNNNTTC	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	4 cut(s)	249, 360, 404, 507
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	495
MspR9I	CCNGG	2 cut(s)	629, 862
MunI	CAATTG	1 cut(s)	449
MvaI	CCWGG	2 cut(s)	629, 862
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	5 cut(s)	605, 644, 653, 839, 911
NcoI	CCATGG	1 cut(s)	540
NdeI	CATATG	1 cut(s)	748
NdeII	GATC	6 cut(s)	16, 271, 674, 730, 897, 947
NlaIII	CATG	4 cut(s)	292, 544, 697, 846
NlaIV	GGNNCC	4 cut(s)	418, 633, 806, 915
NmuCI	GTSAC	2 cut(s)	24, 463
NspI	RCATGY	1 cut(s)	292
PagI	TCATGA	1 cut(s)	693
PaqCI	CACCTGC	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	198
PflMI	CCANNNNNTGG	2 cut(s)	502, 843
PkrI	GCNGC	2 cut(s)	626, 835
PpuMI	RGGWCCY	1 cut(s)	854
Psp5II	RGGWCCY	1 cut(s)	854
Psp6I	CCWGG	2 cut(s)	627, 860
PspGI	CCWGG	2 cut(s)	627, 860
PspN4I	GGNNCC	4 cut(s)	418, 633, 806, 915
PspPI	GGNCC	3 cut(s)	533, 805, 854
PspPPI	RGGWCCY	1 cut(s)	854
PstI	CTGCAG	2 cut(s)	595, 640
PsuI	RGATCY	3 cut(s)	674, 730, 897
RsaI	GTAC	1 cut(s)	869
RsaNI	GTAC	1 cut(s)	868
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	4 cut(s)	249, 360, 404, 507
SatI	GCNGC	2 cut(s)	625, 834
Sau3AI	GATC	6 cut(s)	16, 271, 674, 730, 897, 947
Sau96I	GGNCC	3 cut(s)	533, 805, 854
ScrFI	CCNGG	2 cut(s)	629, 862
SfaNI	GCATC	1 cut(s)	656
SfcI	CTRYAG	2 cut(s)	591, 636
SinI	GGWCC	1 cut(s)	854
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	7 cut(s)	63, 185, 231, 449, 508, 753, 872
SsiI	CCGC	4 cut(s)	93, 106, 124, 142
StyD4I	CCNGG	2 cut(s)	627, 860
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	438
TasI	AATT	7 cut(s)	63, 185, 231, 449, 508, 753, 872
Tru1I	TTAA	4 cut(s)	249, 360, 404, 507
Tru9I	TTAA	4 cut(s)	249, 360, 404, 507
TscAI	CASTG	4 cut(s)	35, 331, 559, 889
TseFI	GTSAC	2 cut(s)	24, 463
TseI	GCWGC	2 cut(s)	624, 833
Tsp45I	GTSAC	2 cut(s)	24, 463
TspDTI	ATGAA	3 cut(s)	68, 119, 297
TspRI	CASTG	4 cut(s)	35, 331, 559, 889
Van91I	CCANNNNNTGG	2 cut(s)	502, 843
VpaK11BI	GGWCC	1 cut(s)	854
XapI	RAATTY	1 cut(s)	872
XceI	RCATGY	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.