Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Forward (+)

46302097 .. 46305430

Gene Structure 3334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G567600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGATAAGATCATTTGAGCTTCAGGGGCAGTGGTTCCCATTACCCAAAGTGGGTCCCACTCCAACCCCCATTCATCACATCACCACCGCCGCTTCTCTCCGCCTCGGCCACCATCTCGCGCATCACCAATTCCGCCTTGATTCTCTTTTTCGTTCCTACTTTCAGAAACTTGCTCATATTAGTCCCCTGCATAGATTGAAGGAAGGAATTAATTTTCTGCCACTGTCGAGTCATGCTTCACCTTGCTTTAGTTTCTTTAATGGGGGAGAAACTAGCAATGACTCCACAAATGAAGCGATGTCTAACTCTAAGGTGTCCAGTATAAACTTCTTCAATGGGAGGCAATGGACTAATGTCCTCCTTGCTCTTAATATCTTAGTTTACATTGCACAAATTGCAACACAAGATGAGTTACTCCTATGGGGAGCCAAGATAAATAGGCTTATCGACAAAGGGCAATTGTGGAGGCTGGTCACATCTTCCTTTTTACATGCAAATGTTGGGCACCTAATGGTGAATTGTTATTCTTTAAATTCAGTTGGTCCTACCATGGAGAAGATCAGTGGTCCTAATAGATATCTTGCGCTCTACTTTGCCTCTGCAATTGCAAGTTCAGCGATGAGTTATTGGTTCAGTGAGGCACCCGCAGTTGGTGCATCAGGGGCAGTCTTTGGATTAGTTGGATCTCTTGCTGTCTTTGTCATGAGGCATAGAGGTCTGGTTGGACGTGGCAAAGAAGATCTACAGCACATAGCACATGTAATTGCCGTAAATATGGCTATGGGGTTTTTCTTCAAAGGCATTGATAACTGGGGACATTTTGGAGGCTTGCTCGGTGGAGTTGCCACATCATGGCTTCTAGGTCCTGCATGGAAGTACGAATCTCCCTCCAGTGATGGTCGAAGAATCTTTTCTGACAAGGCTCCTATTTTCTACCTCATCAACGCAAAGAAGAGATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

321

Amino Acids

35.39

Weight (kDa)

9.8

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	504, 640
AccB7I	CCANNNNNTGG	1 cut(s)	852
AccII	CGCG	1 cut(s)	119
AciI	CCGC	5 cut(s)	87, 90, 100, 133, 645
AclWI	GGATC	2 cut(s)	691, 951
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	5
AfaI	GTAC	1 cut(s)	878
AfiI	CCNNNNNNNGG	3 cut(s)	50, 650, 852
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	3 cut(s)	199, 334, 796
AjiI	CACGTC	1 cut(s)	728
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
AlwI	GGATC	2 cut(s)	691, 951
AoxI	GGCC	1 cut(s)	106
ApoI	RAATTY	1 cut(s)	532
AseI	ATTAAT	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	910
AspLEI	GCGC	2 cut(s)	121, 586
AspS9I	GGNCC	4 cut(s)	53, 542, 566, 863
AsuHPI	GGTGA	4 cut(s)	73, 116, 231, 526
AvaII	GGWCC	4 cut(s)	53, 542, 566, 863
BaeGI	GKGCMC	1 cut(s)	507
BanI	GGYRCC	2 cut(s)	504, 640
BccI	CCATC	2 cut(s)	120, 890
BceAI	ACGGC	1 cut(s)	752
BfaI	CTAG	3 cut(s)	273, 860, 961
BfmI	CTRYAG	1 cut(s)	743
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme18I	GGWCC	4 cut(s)	53, 542, 566, 863
BmgBI	CACGTC	1 cut(s)	728
BmgT120I	GGNCC	4 cut(s)	53, 542, 566, 863
BmiI	GGNNCC	7 cut(s)	35, 54, 55, 427, 506, 642, 924
BmrI	ACTGGG	1 cut(s)	820
BmsI	GCATC	2 cut(s)	130, 665
BmuI	ACTGGG	1 cut(s)	820
BoxI	GACNNNNGTC	1 cut(s)	353
BplI	GAGNNNNNCTC	2 cut(s)	816, 848
BpmI	CTGGAG	1 cut(s)	874
BsaJI	CCNNGG	2 cut(s)	103, 549
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 650, 852
Bse1I	ACTGG	3 cut(s)	318, 815, 891
Bse3DI	GCAATG	3 cut(s)	283, 350, 384
BseDI	CCNNGG	2 cut(s)	103, 549
BseLI	CCNNNNNNNGG	3 cut(s)	50, 650, 852
BseMI	GCAATG	3 cut(s)	283, 350, 384
BseNI	ACTGG	3 cut(s)	318, 815, 891
BseSI	GKGCMC	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	2 cut(s)	504, 640
BslFI	GGGAC	3 cut(s)	39, 168, 828
BslI	CCNNNNNNNGG	3 cut(s)	50, 650, 852
BsmFI	GGGAC	3 cut(s)	39, 168, 828
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	5 cut(s)	8, 558, 683, 739, 956
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	5 cut(s)	87, 90, 100, 133, 645
BspANI	GGCC	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	7 cut(s)	35, 54, 55, 427, 506, 642, 924
BspPI	GGATC	2 cut(s)	691, 951
BspT107I	GGYRCC	2 cut(s)	504, 640
BsrDI	GCAATG	3 cut(s)	283, 350, 384
BsrI	ACTGG	3 cut(s)	318, 815, 891
BssECI	CCNNGG	2 cut(s)	103, 549
BssMI	GATC	5 cut(s)	8, 558, 683, 739, 956
BssT1I	CCWWGG	1 cut(s)	549
Bst4CI	ACNGT	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	947
BstAPI	GCANNNNNTGC	2 cut(s)	395, 653
BstC8I	GCNNGC	1 cut(s)	830
BstDEI	CTNAG	2 cut(s)	309, 376
BstDSI	CCRYGG	1 cut(s)	549
BstFNI	CGCG	1 cut(s)	119
BstHHI	GCGC	2 cut(s)	121, 586
BstKTI	GATC	5 cut(s)	11, 561, 686, 742, 959
BstMBI	GATC	5 cut(s)	8, 558, 683, 739, 956
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 395, 614, 653, 662
BstNSI	RCATGY	2 cut(s)	494, 761
BstPAI	GACNNNNGTC	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	743
BstSLI	GKGCMC	1 cut(s)	507
BstUI	CGCG	1 cut(s)	119
BstX2I	RGATCY	3 cut(s)	683, 739, 956
BstYI	RGATCY	3 cut(s)	683, 739, 956
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	549
BtgZI	GCGATG	2 cut(s)	311, 632
BtrI	CACGTC	1 cut(s)	728
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	5 cut(s)	35, 221, 568, 640, 898
Cac8I	GCNNGC	1 cut(s)	830
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	2 cut(s)	121, 586
Cfr13I	GGNCC	4 cut(s)	53, 542, 566, 863
Csp6I	GTAC	1 cut(s)	877
CviAII	CATG	7 cut(s)	233, 491, 550, 703, 758, 852, 870
CviJI	RGCY	9 cut(s)	19, 108, 428, 442, 469, 779, 828, 856, 923
CviKI_1	RGCY	9 cut(s)	19, 108, 428, 442, 469, 779, 828, 856, 923
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	2 cut(s)	309, 376
DpnI	GATC	5 cut(s)	10, 560, 685, 741, 958
DpnII	GATC	5 cut(s)	8, 558, 683, 739, 956
DraI	TTTAAA	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	947
EarI	CTCTTC	1 cut(s)	947
EciI	GGCGGA	2 cut(s)	89, 122
Eco130I	CCWWGG	1 cut(s)	549
Eco32I	GATATC	1 cut(s)	578
Eco47I	GGWCC	4 cut(s)	53, 542, 566, 863
Eco57I	CTGAAG	1 cut(s)	5
EcoO109I	RGGNCCY	2 cut(s)	53, 863
EcoRV	GATATC	1 cut(s)	578
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	7 cut(s)	236, 494, 553, 706, 761, 855, 873
FaqI	GGGAC	3 cut(s)	39, 168, 828
FatI	CATG	7 cut(s)	232, 490, 549, 702, 757, 851, 869
FauI	CCCGC	1 cut(s)	652
Fnu4HI	GCNGC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	3 cut(s)	273, 860, 961
GlaI	GCGC	2 cut(s)	120, 585
GluI	GCNGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	874
HaeIII	GGCC	1 cut(s)	108
HhaI	GCGC	2 cut(s)	121, 586
Hin1II	CATG	7 cut(s)	236, 494, 553, 706, 761, 855, 873
Hin6I	GCGC	2 cut(s)	119, 584
HinP1I	GCGC	2 cut(s)	119, 584
HinfI	GANTC	5 cut(s)	140, 229, 281, 881, 906
HphI	GGTGA	4 cut(s)	73, 116, 231, 526
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	165, 916
Hpy188III	TCNNGA	1 cut(s)	703
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	193, 197
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4IV	ACGT	1 cut(s)	727
HpyCH4V	TGCA	8 cut(s)	190, 389, 398, 494, 602, 608, 656, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 395, 614, 653, 662
HpyF3I	CTNAG	2 cut(s)	309, 376
HpySE526I	ACGT	1 cut(s)	727
Hsp92II	CATG	7 cut(s)	236, 494, 553, 706, 761, 855, 873
HspAI	GCGC	2 cut(s)	119, 584
KflI	GGGWCCC	1 cut(s)	53
Kzo9I	GATC	5 cut(s)	8, 558, 683, 739, 956
LmnI	GCTCC	2 cut(s)	425, 928
LpnPI	CCDG	9 cut(s)	8, 200, 331, 455, 645, 704, 796, 879, 904
LweI	GCATC	2 cut(s)	130, 665
MaeI	CTAG	3 cut(s)	273, 860, 961
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	2 cut(s)	411, 472
MalI	GATC	5 cut(s)	10, 560, 685, 741, 958
MboI	GATC	5 cut(s)	8, 558, 683, 739, 956
MboII	GAAGA	6 cut(s)	322, 471, 568, 749, 784, 915
MfeI	CAATTG	2 cut(s)	458, 603
MflI	RGATCY	3 cut(s)	683, 739, 956
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	9 cut(s)	128, 207, 211, 393, 458, 517, 532, 603, 762
MlyI	GAGTC	2 cut(s)	238, 275
MmeI	TCCRAC	3 cut(s)	86, 661, 703
MroXI	GAANNNNTTC	1 cut(s)	910
MseI	TTAA	4 cut(s)	210, 258, 369, 530
MslI	CAYNNNNRTG	1 cut(s)	495
MunI	CAATTG	2 cut(s)	458, 603
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	5 cut(s)	25, 395, 614, 653, 662
NcoI	CCATGG	1 cut(s)	549
NdeII	GATC	5 cut(s)	8, 558, 683, 739, 956
NlaIII	CATG	7 cut(s)	236, 494, 553, 706, 761, 855, 873
NlaIV	GGNNCC	7 cut(s)	35, 54, 55, 427, 506, 642, 924
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	472
NspI	RCATGY	2 cut(s)	494, 761
PagI	TCATGA	1 cut(s)	702
PciI	ACATGT	1 cut(s)	757
PdmI	GAANNNNTTC	1 cut(s)	910
PfeI	GAWTC	3 cut(s)	140, 881, 906
PflMI	CCANNNNNTGG	1 cut(s)	852
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	2 cut(s)	237, 275
PpsI	GAGTC	2 cut(s)	237, 275
PpuMI	RGGWCCY	2 cut(s)	53, 863
PscI	ACATGT	1 cut(s)	757
PshAI	GACNNNNGTC	1 cut(s)	353
PshBI	ATTAAT	1 cut(s)	210
Psp5II	RGGWCCY	2 cut(s)	53, 863
PspN4I	GGNNCC	7 cut(s)	35, 54, 55, 427, 506, 642, 924
PspPI	GGNCC	4 cut(s)	53, 542, 566, 863
PspPPI	RGGWCCY	2 cut(s)	53, 863
PsuI	RGATCY	3 cut(s)	683, 739, 956
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	210, 258, 369, 530
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	5 cut(s)	8, 558, 683, 739, 956
Sau96I	GGNCC	4 cut(s)	53, 542, 566, 863
SchI	GAGTC	2 cut(s)	238, 275
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	8 cut(s)	21, 244, 315, 510, 718, 730, 865, 939
SfaNI	GCATC	2 cut(s)	130, 665
SfcI	CTRYAG	1 cut(s)	743
SinI	GGWCC	4 cut(s)	53, 542, 566, 863
SmiMI	CAYNNNNRTG	1 cut(s)	495
Sse9I	AATT	9 cut(s)	128, 207, 211, 393, 458, 517, 532, 603, 762
SsiI	CCGC	5 cut(s)	87, 90, 100, 133, 645
SspMI	CTAG	3 cut(s)	273, 860, 961
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	225
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	3 cut(s)	227, 447, 901
TasI	AATT	9 cut(s)	128, 207, 211, 393, 458, 517, 532, 603, 762
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	3 cut(s)	140, 881, 906
Tru1I	TTAA	4 cut(s)	210, 258, 369, 530
Tru9I	TTAA	4 cut(s)	210, 258, 369, 530
TscAI	CASTG	5 cut(s)	35, 228, 568, 640, 898
TseFI	GTSAC	1 cut(s)	472
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	2 cut(s)	62, 306
TspRI	CASTG	5 cut(s)	35, 228, 568, 640, 898
Van91I	CCANNNNNTGG	1 cut(s)	852
VpaK11BI	GGWCC	4 cut(s)	53, 542, 566, 863
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	1 cut(s)	532
XceI	RCATGY	2 cut(s)	494, 761
XmnI	GAANNNNTTC	1 cut(s)	910
XspI	CTAG	3 cut(s)	273, 860, 961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.