Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008612

Physical Location & Seq

Genomic Coordinates Reverse (-)

46223452 .. 46228063

Gene Structure 4612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG348700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTTGGGATGATAAGTTCAGGTGATCTCCAGTCACAGTGGTTCTCTCTACCCAAAGTGGGTCGCTCTGCAATTCCAAGCCCTGTTCATCTCATTGCCTCTGCCACTTCTCTCCGCCTCACCCACCACTTCCGCCTTCATTCCCTTCTCCGCTCCTATTTTCAGAAACTGGCTCATATCAGTCCCTTGCATAAACTGAAGGAAGGGTTTAACTTTACCACTATACCATTGTCAACTCGTACTTCAATTTGCTTTACTTTCTTTAATGGAAGAGACAACAGCAATGATCTCACTAATGAAGACATGCCCAACTCTAAAACGTCCACTGGAAACTCCTTCACTGGAAGACAATGGACAAATCTTCTTCTTGCTCTTAACATCATAGTTTTTATCGCACAAGTTGGCACACAAAATGACTTAATCCTATGGGGTGCTAAGATAAATAGGCTTATCGATAAAGGGCAATTGTGGAGGCTCGTCACGAGTTCCTTTTTGCACGCAAATGTTGGCCACCTCTTGGTTAACTGCTATTCTTTGAATAATGTTGGCCCTACCATGGAGAGGCTCAGTGGTTCAAAGAGATTTCTTGCGATTTACTTCACCTCTGCAATTGCAAGTTCAGCAATGAGTTATTGGTGCAGCCAGGCACCTGCGGTTGGTGCATCAGGAGCAGTCTTCGGCTTAGTAAGTCATTTTTCACCAGCCAGAATGATTTTCTACACTTCCTACATGCACCACGTAACTGAGCAGAGCAGTTTGGTTTGGTTTGGTTTTTGCGGTAGCTCTGATATTTTGCATGAAAACTTGCCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009941 GO:0009987 GO:0010026 GO:0010154 GO:0016020 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

271

Amino Acids

30.08

Weight (kDa)

9.44

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	153 - 233	2.5e-24	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25290 AT1G25290
fragaria_vesca	FvH4_5g29570 FvH4_5g29570 FvH4_5g29570
malus_domestica	MD15G1422300.v1.1
prunus_persica	Prupe.1G567600_v2.0.a1
pyrus_communis	pycom15g37420
rosa_chinensis	RchiOBHm_Chr7g0222531
rosa_laevigata	RLG00000002047
rosa_multiflora	Rmu_ssc0000146.1_g000027
rosa_roxburghii	Rroxscaffold_3G00236680
rosa_rugosa	Rorug07G0210300 Rorug07G0210400
rosa_samantha	Rh7AG352000 Rh7AG352400 Rh7BG342600 Rh7CG369400 Rh7CG369700 Rh7DG348700
rosa_wichuraiana	Rw7G029720 Rw7G030040 Rw7G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	658
Acc36I	ACCTGC	1 cut(s)	658
AccB1I	GGYRCC	1 cut(s)	646
AccB7I	CCANNNNNTGG	1 cut(s)	517
AccBSI	CCGCTC	1 cut(s)	153
AciI	CCGC	5 cut(s)	115, 133, 151, 653, 777
AcoI	YGGCCR	1 cut(s)	508
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	5 cut(s)	59, 517, 556, 561, 656
AgsI	TTSAA	3 cut(s)	246, 538, 576
AjnI	CCWGG	1 cut(s)	642
AloI	GAACNNNNNNTCC	1 cut(s)	33
AluBI	AGCT	1 cut(s)	783
AluI	AGCT	1 cut(s)	783
Alw26I	GTCTC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	2 cut(s)	508, 547
ApeKI	GCWGC	1 cut(s)	639
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	4 cut(s)	35, 112, 592, 690
BalI	TGGCCA	1 cut(s)	510
BanI	GGYRCC	1 cut(s)	646
BauI	CACGAG	1 cut(s)	481
BbsI	GAAGAC	3 cut(s)	306, 352, 667
BbvI	GCAGC	1 cut(s)	651
BciT130I	CCWGG	1 cut(s)	644
BcoDI	GTCTC	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	658
BisI	GCNGC	1 cut(s)	640
BlsI	GCNGC	1 cut(s)	641
Bme1390I	CCNGG	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	648
BmrFI	CCNGG	1 cut(s)	644
BmsI	GCATC	1 cut(s)	671
BpiI	GAAGAC	3 cut(s)	306, 352, 667
BpmI	CTGGAG	1 cut(s)	14
Bsa29I	ATCGAT	1 cut(s)	453
BsaAI	YACGTR	1 cut(s)	739
BsaJI	CCNNGG	1 cut(s)	555
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 517, 556, 561, 656
Bse1I	ACTGG	4 cut(s)	31, 174, 331, 346
Bse3DI	GCAATG	3 cut(s)	93, 289, 630
BseBI	CCWGG	1 cut(s)	644
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	5 cut(s)	59, 517, 556, 561, 656
BseMI	GCAATG	3 cut(s)	93, 289, 630
BseMII	CTCAG	2 cut(s)	580, 735
BseNI	ACTGG	4 cut(s)	31, 174, 331, 346
BseXI	GCAGC	1 cut(s)	651
BsgI	GTGCAG	1 cut(s)	658
BshFI	GGCC	2 cut(s)	510, 549
BshNI	GGYRCC	1 cut(s)	646
BshVI	ATCGAT	1 cut(s)	453
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	5 cut(s)	59, 517, 556, 561, 656
BsmAI	GTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	510, 549
Bsp143I	GATC	2 cut(s)	25, 286
Bsp19I	CCATGG	1 cut(s)	555
BspACI	CCGC	5 cut(s)	115, 133, 151, 653, 777
BspANI	GGCC	2 cut(s)	510, 549
BspCNI	CTCAG	2 cut(s)	579, 736
BspDI	ATCGAT	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	648
BspMI	ACCTGC	1 cut(s)	658
BspT107I	GGYRCC	1 cut(s)	646
BsrBI	CCGCTC	1 cut(s)	153
BsrDI	GCAATG	3 cut(s)	93, 289, 630
BsrI	ACTGG	4 cut(s)	31, 174, 331, 346
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	2 cut(s)	25, 286
BssSI	CACGAG	1 cut(s)	481
BssT1I	CCWWGG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	4 cut(s)	435, 566, 682, 744
BstDSI	CCRYGG	1 cut(s)	555
BstF5I	GGATG	1 cut(s)	15
BstKTI	GATC	2 cut(s)	28, 289
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	25, 286
BstMWI	GCNNNNNNNGC	3 cut(s)	620, 659, 668
BstNI	CCWGG	1 cut(s)	644
BstNSI	RCATGY	2 cut(s)	307, 733
BstSCI	CCNGG	1 cut(s)	642
BstV1I	GCAGC	1 cut(s)	651
BstV2I	GAAGAC	3 cut(s)	306, 352, 667
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	510, 549
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	555
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	4 cut(s)	44, 324, 339, 574
BveI	ACCTGC	1 cut(s)	658
Cac8I	GCNNGC	1 cut(s)	498
CaiI	CAGNNNCTG	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	548
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	4 cut(s)	304, 556, 730, 797
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	4 cut(s)	435, 566, 682, 744
DpnI	GATC	2 cut(s)	27, 288
DpnII	GATC	2 cut(s)	25, 286
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
EciI	GGCGGA	2 cut(s)	104, 122
Eco130I	CCWWGG	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	642
EcoT14I	CCWWGG	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	4 cut(s)	307, 559, 733, 800
FaiI	YATR	9 cut(s)	177, 192, 224, 305, 383, 427, 557, 731, 798
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	4 cut(s)	303, 555, 729, 796
Fnu4HI	GCNGC	1 cut(s)	640
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	640
GluI	GCNGC	1 cut(s)	640
GsuI	CTGGAG	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	510, 549
Hin1II	CATG	4 cut(s)	307, 559, 733, 800
HincII	GTYRAC	2 cut(s)	234, 523
HindII	GTYRAC	2 cut(s)	234, 523
HpaI	GTTAAC	1 cut(s)	523
HphI	GGTGA	4 cut(s)	35, 112, 592, 690
Hpy166II	GTNNAC	3 cut(s)	234, 324, 523
Hpy188I	TCNGA	2 cut(s)	165, 787
Hpy188III	TCNNGA	2 cut(s)	481, 666
Hpy8I	GTNNAC	3 cut(s)	234, 324, 523
HpyAV	CCTTC	5 cut(s)	146, 155, 193, 197, 346
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	2 cut(s)	320, 738
HpyCH4V	TGCA	9 cut(s)	71, 190, 496, 608, 614, 639, 662, 733, 796
HpyF10VI	GCNNNNNNNGC	3 cut(s)	620, 659, 668
HpyF3I	CTNAG	4 cut(s)	435, 566, 682, 744
HpySE526I	ACGT	2 cut(s)	320, 738
Hsp92II	CATG	4 cut(s)	307, 559, 733, 800
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	25, 286
LmnI	GCTCC	2 cut(s)	158, 668
Lsp1109I	GCAGC	1 cut(s)	651
LweI	GCATC	1 cut(s)	671
MaeII	ACGT	2 cut(s)	320, 738
MaeIII	GTNAC	3 cut(s)	33, 478, 739
MalI	GATC	2 cut(s)	27, 288
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	2 cut(s)	25, 286
MboII	GAAGA	6 cut(s)	282, 311, 353, 356, 357, 667
MfeI	CAATTG	2 cut(s)	464, 609
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	4 cut(s)	72, 246, 464, 609
MluNI	TGGCCA	1 cut(s)	510
MnlI	CCTC	6 cut(s)	109, 128, 465, 524, 555, 613
Mox20I	TGGCCA	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	5 cut(s)	210, 264, 375, 419, 522
MslI	CAYNNNNRTG	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	510
MspR9I	CCNGG	1 cut(s)	644
MunI	CAATTG	2 cut(s)	464, 609
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	3 cut(s)	620, 659, 668
NcoI	CCATGG	1 cut(s)	555
NdeII	GATC	2 cut(s)	25, 286
NlaIII	CATG	4 cut(s)	307, 559, 733, 800
NlaIV	GGNNCC	1 cut(s)	648
NmuCI	GTSAC	2 cut(s)	33, 478
NspI	RCATGY	2 cut(s)	307, 733
PaqCI	CACCTGC	1 cut(s)	658
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	641
Ppu21I	YACGTR	1 cut(s)	739
Psp6I	CCWGG	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	1 cut(s)	648
PspPI	GGNCC	1 cut(s)	548
PstNI	CAGNNNCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	5 cut(s)	210, 264, 375, 419, 522
SatI	GCNGC	1 cut(s)	640
Sau3AI	GATC	2 cut(s)	25, 286
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	644
SetI	ASST	7 cut(s)	25, 323, 516, 605, 652, 741, 785
SfaNI	GCATC	1 cut(s)	671
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	4 cut(s)	72, 246, 464, 609
SsiI	CCGC	5 cut(s)	115, 133, 151, 653, 777
StyD4I	CCNGG	1 cut(s)	642
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	2 cut(s)	323, 741
TaqI	TCGA	1 cut(s)	453
TasI	AATT	4 cut(s)	72, 246, 464, 609
Tru1I	TTAA	5 cut(s)	210, 264, 375, 419, 522
Tru9I	TTAA	5 cut(s)	210, 264, 375, 419, 522
TscAI	CASTG	4 cut(s)	44, 331, 346, 574
TseFI	GTSAC	2 cut(s)	33, 478
TseI	GCWGC	1 cut(s)	639
Tsp45I	GTSAC	2 cut(s)	33, 478
TspDTI	ATGAA	4 cut(s)	77, 128, 312, 813
TspRI	CASTG	4 cut(s)	44, 331, 346, 574
Van91I	CCANNNNNTGG	1 cut(s)	517
XceI	RCATGY	2 cut(s)	307, 733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.