AT1G25550
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010335
Physical Location & Seq
Forward (+)
8976326 .. 8978305
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G25550.2

Sequence Viewer

Length: 1035 bp
ATGATGATGTTCAAGAGCGGTGACATGGATTACACCCAGAAAATGAAGAGATGTCACGAATATGTAGAAGCTCTAGAAGAAGAACAAAAAAAGATTCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAGCTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCGGCCAGTCAGAATGTTCTGAGCGGACAACTAGTGAATGCGGCGGTGCCGTGTTTGAAGAGTTTATGCCAATCAAGTGGAGTTCTGCTTCATCTGATGAAACCGATAAAGATGAAGAAGCTGAGAAAACTGAGATGATGACCAATGAAAATAACGATGGTGATAAGAAGAAATCGGATTGGCTTAGATCTGTTCAATTGTGGAACCAATCACCAGATCCACAACCTAATAATAAGAAACCGATGGTAATTGAAGTCAAACGCAGCGCTGGTGCGTTTCAACCGTTTCAAAAGGAGAAACCTAAGGCTGCAGATTCTCAACCACTTATTAAAGCAATTACTCCGACGTCGACGACGACAACTAGTTCCACGGCGGAAACCGTCGGGGGTGGAAAAGAGTTTGAGGAGCAGAAACAATCTCATTCGAATAGGAAGCAAAGACGTTGCTGGTCACCGGAGTTACACCGCAGATTCTTGCACGCGCTTCAACAACTTGGTGGATCACATGTTGCTACGCCTAAGCAGATTAGAGATCTTATGAAGGTCGATGGTTTAACTAATGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTCCGGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCATTTGGGTACCTTCACACGATACAACTAATAATAGAGTTTACGCTCCTGTGGCGACACAACCGCCGCAATCTTCAACGTCGGGAGAGAGAAGCAATCGGGGTTGCAAATCTCCCGCAACATCTTCTACTACTACACACACACCACACCTTCTTCCTCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

344

Amino Acids

38.85

Weight (kDa)

7.17

Isoelectric Point (pI)

65.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 11 - 57 9e-15 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 211 - 259 1e-05 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 542
Acc65I GGTACC 1 cut(s) 877
AccB1I GGYRCC 2 cut(s) 239, 877
AccBSI CCGCTC 2 cut(s) 18, 217
AccI GTMKAC 1 cut(s) 542
AccII CGCG 1 cut(s) 674
AclWI GGATC 2 cut(s) 404, 700
AcoI YGGCCR 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 165
AcyI GRCGYC 1 cut(s) 539
AfaI GTAC 1 cut(s) 879
AfeI AGCGCT 1 cut(s) 460
AflIII ACRYGT 2 cut(s) 187, 697
AgeI ACCGGT 1 cut(s) 824
AhlI ACTAGT 2 cut(s) 224, 554
AluBI AGCT 5 cut(s) 71, 115, 146, 314, 806
AluI AGCT 5 cut(s) 71, 115, 146, 314, 806
Alw21I GWGCWC 1 cut(s) 117
AlwI GGATC 2 cut(s) 404, 700
Aor51HI AGCGCT 1 cut(s) 460
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 2 cut(s) 456, 500
AsiGI ACCGGT 1 cut(s) 824
Asp718I GGTACC 1 cut(s) 877
AspLEI GCGC 2 cut(s) 461, 676
AspS9I GGNCC 1 cut(s) 822
AsuHPI GGTGA 6 cut(s) 32, 365, 396, 636, 842, 871
AsuII TTCGAA 1 cut(s) 617
AvaII GGWCC 1 cut(s) 822
AxyI CCTNAGG 1 cut(s) 495
BanI GGYRCC 2 cut(s) 239, 877
BanII GRGCYC 1 cut(s) 117
BarI GAAGNNNNNNTAC 2 cut(s) 790, 822
BbsI GAAGAC 1 cut(s) 805
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 468, 487
BccI CCATC 4 cut(s) 344, 430, 734, 856
BceAI ACGGC 3 cut(s) 227, 579, 863
BcuI ACTAGT 2 cut(s) 224, 554
BfaI CTAG 3 cut(s) 74, 225, 555
BfmI CTRYAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 462
BglII AGATCT 2 cut(s) 380, 724
BisI GCNGC 5 cut(s) 196, 235, 457, 501, 935
BlsI GCNGC 5 cut(s) 197, 236, 458, 502, 936
Bme18I GGWCC 1 cut(s) 822
BmgT120I GGNCC 1 cut(s) 822
BmiI GGNNCC 3 cut(s) 241, 398, 879
BpiI GAAGAC 1 cut(s) 805
Bpu10I CCTNAGC 1 cut(s) 711
Bpu14I TTCGAA 1 cut(s) 617
BsaHI GRCGYC 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 561
BsaWI WCCGGW 3 cut(s) 646, 811, 824
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bse118I RCCGGY 1 cut(s) 824
Bse1I ACTGG 1 cut(s) 199
Bse21I CCTNAGG 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 561
BseMII CTCAG 3 cut(s) 204, 306, 315
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 611
BseXI GCAGC 2 cut(s) 468, 487
Bsh1236I CGCG 1 cut(s) 674
BshFI GGCC 1 cut(s) 198
BshNI GGYRCC 2 cut(s) 239, 877
BshTI ACCGGT 1 cut(s) 824
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 3 cut(s) 647, 812, 825
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 1 cut(s) 198
Bsp119I TTCGAA 1 cut(s) 617
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 4 cut(s) 380, 409, 692, 724
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 3 cut(s) 205, 307, 316
BspFNI CGCG 1 cut(s) 674
BspLI GGNNCC 3 cut(s) 241, 398, 879
BspMAI CTGCAG 1 cut(s) 505
BspPI GGATC 2 cut(s) 404, 700
BspT104I TTCGAA 1 cut(s) 617
BspT107I GGYRCC 2 cut(s) 239, 877
BsrBI CCGCTC 2 cut(s) 18, 217
BsrFI RCCGGY 1 cut(s) 824
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 824
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 4 cut(s) 380, 409, 692, 724
BssNI GRCGYC 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 477, 574
Bst6I CTCTTC 2 cut(s) 41, 246
BstACI GRCGYC 1 cut(s) 539
BstBI TTCGAA 1 cut(s) 617
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 6 cut(s) 213, 315, 324, 377, 495, 711
BstDSI CCRYGG 1 cut(s) 561
BstEII GGTNACC 1 cut(s) 642
BstFNI CGCG 1 cut(s) 674
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 2 cut(s) 461, 676
BstKTI GATC 4 cut(s) 383, 412, 695, 727
BstMBI GATC 4 cut(s) 380, 409, 692, 724
BstMWI GCNNNNNNNGC 1 cut(s) 920
BstNSI RCATGY 2 cut(s) 191, 701
BstPI GGTNACC 1 cut(s) 642
BstSFI CTRYAG 1 cut(s) 501
BstUI CGCG 1 cut(s) 674
BstV1I GCAGC 2 cut(s) 468, 487
BstV2I GAAGAC 1 cut(s) 805
BstX2I RGATCY 3 cut(s) 380, 409, 724
BstXI CCANNNNNNTGG 1 cut(s) 270
BstYI RGATCY 3 cut(s) 380, 409, 724
Bsu36I CCTNAGG 1 cut(s) 495
BsuRI GGCC 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 561
Cac8I GCNNGC 1 cut(s) 672
CfoI GCGC 2 cut(s) 461, 676
Cfr10I RCCGGY 1 cut(s) 824
Cfr13I GGNCC 1 cut(s) 822
Csp6I GTAC 1 cut(s) 878
CspAI ACCGGT 1 cut(s) 824
CviAII CATG 4 cut(s) 25, 156, 188, 698
CviJI RGCY 8 cut(s) 71, 115, 146, 198, 314, 376, 500, 806
CviKI_1 RGCY 8 cut(s) 71, 115, 146, 198, 314, 376, 500, 806
CviQI GTAC 1 cut(s) 878
DdeI CTNAG 6 cut(s) 213, 315, 324, 377, 495, 711
DpnI GATC 4 cut(s) 382, 411, 694, 726
DpnII GATC 4 cut(s) 380, 409, 692, 724
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 41, 246
EarI CTCTTC 2 cut(s) 41, 246
EciI GGCGGA 1 cut(s) 581
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 822
Eco47III AGCGCT 1 cut(s) 460
Eco53kI GAGCTC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 495
Eco91I GGTNACC 1 cut(s) 642
EcoICRI GAGCTC 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 642
EcoT38I GRGCYC 1 cut(s) 117
FaeI CATG 4 cut(s) 28, 159, 191, 701
FatI CATG 4 cut(s) 24, 155, 187, 697
FauI CCCGC 1 cut(s) 991
FblI GTMKAC 1 cut(s) 542
Fnu4HI GCNGC 5 cut(s) 196, 235, 457, 501, 935
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 5 cut(s) 196, 235, 457, 501, 935
FspBI CTAG 3 cut(s) 74, 225, 555
GlaI GCGC 2 cut(s) 460, 675
GluI GCNGC 5 cut(s) 196, 235, 457, 501, 935
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 1 cut(s) 198
HapII CCGG 3 cut(s) 647, 812, 825
HhaI GCGC 2 cut(s) 461, 676
Hin1I GRCGYC 1 cut(s) 539
Hin1II CATG 4 cut(s) 28, 159, 191, 701
Hin6I GCGC 2 cut(s) 459, 674
HinP1I GCGC 2 cut(s) 459, 674
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HinfI GANTC 5 cut(s) 94, 152, 176, 506, 663
HpaII CCGG 3 cut(s) 647, 812, 825
HphI GGTGA 6 cut(s) 32, 365, 396, 636, 842, 871
Hpy166II GTNNAC 2 cut(s) 543, 910
Hpy188I TCNGA 8 cut(s) 162, 175, 184, 205, 214, 289, 370, 537
Hpy188III TCNNGA 4 cut(s) 13, 56, 74, 951
Hpy8I GTNNAC 2 cut(s) 543, 910
Hpy99I CGWCG 6 cut(s) 541, 544, 547, 550, 578, 952
HpyAV CCTTC 5 cut(s) 157, 727, 860, 891, 1028
HpyCH4III ACNGT 2 cut(s) 477, 574
HpyCH4IV ACGT 4 cut(s) 109, 539, 634, 947
HpyCH4V TGCA 4 cut(s) 503, 670, 790, 975
HpyF10VI GCNNNNNNNGC 1 cut(s) 920
HpyF3I CTNAG 6 cut(s) 213, 315, 324, 377, 495, 711
HpySE526I ACGT 4 cut(s) 109, 539, 634, 947
Hsp92I GRCGYC 1 cut(s) 539
Hsp92II CATG 4 cut(s) 28, 159, 191, 701
HspAI GCGC 2 cut(s) 459, 674
KpnI GGTACC 1 cut(s) 881
Kzo9I GATC 4 cut(s) 380, 409, 692, 724
LmnI GCTCC 3 cut(s) 120, 598, 919
Lsp1109I GCAGC 2 cut(s) 468, 487
MaeI CTAG 3 cut(s) 74, 225, 555
MaeII ACGT 4 cut(s) 109, 539, 634, 947
MaeIII GTNAC 5 cut(s) 20, 53, 136, 642, 651
MalI GATC 4 cut(s) 382, 411, 694, 726
MbiI CCGCTC 2 cut(s) 18, 217
MboI GATC 4 cut(s) 380, 409, 692, 724
MfeI CAATTG 1 cut(s) 389
MflI RGATCY 3 cut(s) 380, 409, 724
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 3 cut(s) 389, 441, 528
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 2 cut(s) 140, 560
MnlI CCTC 2 cut(s) 589, 1035
MseI TTAA 3 cut(s) 522, 746, 762
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 3 cut(s) 647, 812, 825
MunI CAATTG 1 cut(s) 389
Mva1269I GAATGC 1 cut(s) 236
MvnI CGCG 1 cut(s) 674
MwoI GCNNNNNNNGC 1 cut(s) 920
NdeII GATC 4 cut(s) 380, 409, 692, 724
NlaIII CATG 4 cut(s) 28, 159, 191, 701
NlaIV GGNNCC 3 cut(s) 241, 398, 879
NmuCI GTSAC 3 cut(s) 20, 53, 642
NspI RCATGY 2 cut(s) 191, 701
NspV TTCGAA 1 cut(s) 617
PciI ACATGT 2 cut(s) 187, 697
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PctI GAATGC 1 cut(s) 236
PfeI GAWTC 4 cut(s) 94, 176, 506, 663
PinAI ACCGGT 1 cut(s) 824
PkrI GCNGC 5 cut(s) 197, 236, 458, 502, 936
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PscI ACATGT 2 cut(s) 187, 697
Psp124BI GAGCTC 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 642
PspN4I GGNNCC 3 cut(s) 241, 398, 879
PspPI GGNCC 1 cut(s) 822
PstI CTGCAG 1 cut(s) 505
PsuI RGATCY 3 cut(s) 380, 409, 724
RsaI GTAC 1 cut(s) 879
RsaNI GTAC 1 cut(s) 878
RseI CAYNNNNRTG 1 cut(s) 60
SacI GAGCTC 1 cut(s) 117
SalI GTCGAC 1 cut(s) 541
SaqAI TTAA 3 cut(s) 522, 746, 762
SatI GCNGC 5 cut(s) 196, 235, 457, 501, 935
Sau3AI GATC 4 cut(s) 380, 409, 692, 724
Sau96I GGNCC 1 cut(s) 822
SchI GAGTC 1 cut(s) 161
SduI GDGCHC 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 501
SfuI TTCGAA 1 cut(s) 617
SgrDI CGTCGACG 1 cut(s) 541
SinI GGWCC 1 cut(s) 822
SmiMI CAYNNNNRTG 1 cut(s) 60
SpeI ACTAGT 2 cut(s) 224, 554
Sse9I AATT 3 cut(s) 389, 441, 528
SspMI CTAG 3 cut(s) 74, 225, 555
SstI GAGCTC 1 cut(s) 117
TaaI ACNGT 2 cut(s) 477, 574
TaiI ACGT 4 cut(s) 112, 542, 637, 950
TaqI TCGA 4 cut(s) 150, 542, 617, 738
TasI AATT 3 cut(s) 389, 441, 528
TauI GCSGC 3 cut(s) 198, 237, 937
TfiI GAWTC 4 cut(s) 94, 176, 506, 663
Tru1I TTAA 3 cut(s) 522, 746, 762
Tru9I TTAA 3 cut(s) 522, 746, 762
TseFI GTSAC 3 cut(s) 20, 53, 642
TseI GCWGC 2 cut(s) 456, 500
Tsp45I GTSAC 3 cut(s) 20, 53, 642
TspDTI ATGAA 7 cut(s) 59, 273, 306, 321, 354, 746, 1020
VpaK11BI GGWCC 1 cut(s) 822
XbaI TCTAGA 1 cut(s) 73
XceI RCATGY 2 cut(s) 191, 701
XmiI GTMKAC 1 cut(s) 542
XspI CTAG 3 cut(s) 74, 225, 555
ZraI GACGTC 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.