Rh4AG343300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0010335
Physical Location & Seq
Reverse (-)
65155464 .. 65158235
2772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG343300.1

Sequence Viewer

Length: 891 bp
ATGCTAATAGAGTCTACAGAGGAAATGCAGGGTTCAAAGATGAGTTTGTATGTGAAAGCCTTGGAGGAAGAGAGGCAAAAGATTCAAGTTTTCCAAAGAGAGCTGCCTCTCTGCTTGGAGCTTGTCACTCAAGCTATTGAGAGGTGTAAGCAGGAGCTGTCGGATAATAGCATAGAGTACAGGCATGGGCAATCCGAGTGTTCGGAGCAGACTTCAAGTGAGGGACATGTGTTTGAGGAGTTTATACCATTGAAAAGGAGTTCATGCTCTGATAGTGATAATGATGAGGAGCTAGAAGAGTCTGATCATCAGCAGATTAAGATTGATGACAAGGATAAGAGTAACAGTGGTGACAAGAAGAAATCAGACTGGCTTAGATCTGTTCAGCTTTGGAATACGACCCCAGATTTACCCCGGAAAGAGGAATTGCCTAGAAAGGCTTTAGTGGTGGAGGTTAAGAGAAATGGGGGTGCTTTTCAGCCTTTCCAAAGGGAGAAAGGCATTGGGAAGACTAATGGGGCAGTGGCGAAGTCGCCTGCTTCCGCTCCGGCCACTAGCTCAACTGCTGACACCGTCAGCGGTGGCAGCGGCGGTGGAAACAGCAAGAAGGAAGATAAGGAGGGGCAGAGGAAACAGAGGCGGAACTGGTCGCCGGAGTTGCATCGCCGGTTCTTGCATGCCCTTCAGCAGCTTGGTGGCTCGCATACTGCTACACCTAAGCAAATTAGAGAGCTAATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGGTCTGTATATGTGACGGCCTATCCGTTTTGATCATTAGGATTTGCAACCATCCCATACATTGCAGAAATTGGAATTCATATATAACCAATAAATTAAATTTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

296

Amino Acids

33.46

Weight (kDa)

6.53

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 8 - 53 3.7e-15 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 213 - 261 4.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 545
AccI GTMKAC 1 cut(s) 14
AciI CCGC 5 cut(s) 543, 579, 588, 591, 640
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 2 cut(s) 856, 880
AcuI CTGAAG 1 cut(s) 668
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 421, 781
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 4 cut(s) 36, 86, 216, 253
AluBI AGCT 9 cut(s) 103, 121, 134, 157, 292, 388, 558, 691, 733
AluI AGCT 9 cut(s) 103, 121, 134, 157, 292, 388, 558, 691, 733
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 2 cut(s) 549, 799
ApeKI GCWGC 3 cut(s) 103, 585, 688
ApoI RAATTY 2 cut(s) 856, 880
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 515
BbvI GCAGC 3 cut(s) 90, 597, 700
BccI CCATC 2 cut(s) 740, 840
BceAI ACGGC 1 cut(s) 814
BclI TGATCA 2 cut(s) 304, 813
BcnI CCSGG 1 cut(s) 415
BfaI CTAG 3 cut(s) 293, 432, 555
BfmI CTRYAG 1 cut(s) 15
BglII AGATCT 1 cut(s) 377
BisI GCNGC 4 cut(s) 104, 586, 589, 689
BlsI GCNGC 4 cut(s) 105, 587, 590, 690
Bme1390I CCNGG 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 415
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 515
Bpu10I CCTNAGC 1 cut(s) 717
BpuEI CTTGAG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 415
BsaJI CCNNGG 2 cut(s) 60, 413
Bsc4I CCNNNNNNNGG 2 cut(s) 421, 781
Bse118I RCCGGY 1 cut(s) 666
Bse1I ACTGG 2 cut(s) 374, 650
Bse3DI GCAATG 1 cut(s) 841
BseDI CCNNGG 2 cut(s) 60, 413
BseGI GGATG 1 cut(s) 832
BseLI CCNNNNNNNGG 2 cut(s) 421, 781
BseMI GCAATG 1 cut(s) 841
BseNI ACTGG 2 cut(s) 374, 650
BseRI GAGGAG 2 cut(s) 251, 302
BseXI GCAGC 3 cut(s) 90, 597, 700
BshFI GGCC 2 cut(s) 551, 801
BsiSI CCGG 4 cut(s) 415, 548, 653, 667
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 421, 781
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 2 cut(s) 551, 801
Bsp143I GATC 3 cut(s) 304, 377, 813
BspACI CCGC 5 cut(s) 543, 579, 588, 591, 640
BspANI GGCC 2 cut(s) 551, 801
BsrBI CCGCTC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 841
BsrFI RCCGGY 1 cut(s) 666
BsrI ACTGG 2 cut(s) 374, 650
BssAI RCCGGY 1 cut(s) 666
BssECI CCNNGG 2 cut(s) 60, 413
BssMI GATC 3 cut(s) 304, 377, 813
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 347, 574
Bst6I CTCTTC 2 cut(s) 63, 291
BstC8I GCNNGC 3 cut(s) 537, 678, 701
BstDEI CTNAG 2 cut(s) 374, 717
BstF5I GGATG 1 cut(s) 832
BstKTI GATC 3 cut(s) 307, 380, 816
BstMBI GATC 3 cut(s) 304, 377, 813
BstMWI GCNNNNNNNGC 2 cut(s) 585, 658
BstNSI RCATGY 2 cut(s) 230, 680
BstSCI CCNGG 1 cut(s) 413
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 90, 597, 700
BstV2I GAAGAC 1 cut(s) 515
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 2 cut(s) 551, 801
BtgZI GCGATG 1 cut(s) 647
BtsCI GGATG 1 cut(s) 832
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 352, 528
Cac8I GCNNGC 3 cut(s) 537, 678, 701
CaiI CAGNNNCTG 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 666
Csp6I GTAC 1 cut(s) 178
CviAII CATG 4 cut(s) 185, 227, 264, 677
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 374, 717
DpnI GATC 3 cut(s) 306, 379, 815
DpnII GATC 3 cut(s) 304, 377, 813
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 2 cut(s) 63, 291
EarI CTCTTC 2 cut(s) 63, 291
EciI GGCGGA 1 cut(s) 655
Eco130I CCWWGG 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 668
EcoRI GAATTC 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 188, 230, 267, 680
FaqI GGGAC 1 cut(s) 237
FatI CATG 4 cut(s) 184, 226, 263, 676
FbaI TGATCA 2 cut(s) 304, 813
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 4 cut(s) 104, 586, 589, 689
FokI GGATG 1 cut(s) 819
Fsp4HI GCNGC 4 cut(s) 104, 586, 589, 689
FspBI CTAG 3 cut(s) 293, 432, 555
GluI GCNGC 4 cut(s) 104, 586, 589, 689
HaeIII GGCC 2 cut(s) 551, 801
HapII CCGG 4 cut(s) 415, 548, 653, 667
Hin1II CATG 4 cut(s) 188, 230, 267, 680
HinfI GANTC 3 cut(s) 11, 82, 299
HpaII CCGG 4 cut(s) 415, 548, 653, 667
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 6 cut(s) 163, 196, 205, 271, 304, 367
Hpy8I GTNNAC 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 601, 692, 733
HpyCH4III ACNGT 2 cut(s) 347, 574
HpyCH4V TGCA 5 cut(s) 28, 661, 676, 828, 846
HpyF10VI GCNNNNNNNGC 2 cut(s) 585, 658
HpyF3I CTNAG 2 cut(s) 374, 717
Hsp92II CATG 4 cut(s) 188, 230, 267, 680
Ksp22I TGATCA 2 cut(s) 304, 813
Kzo9I GATC 3 cut(s) 304, 377, 813
LmnI GCTCC 5 cut(s) 118, 154, 205, 289, 550
Lsp1109I GCAGC 3 cut(s) 90, 597, 700
LweI GCATC 1 cut(s) 670
MaeI CTAG 3 cut(s) 293, 432, 555
MaeIII GTNAC 4 cut(s) 124, 341, 350, 794
MalI GATC 3 cut(s) 306, 379, 815
MbiI CCGCTC 1 cut(s) 545
MboI GATC 3 cut(s) 304, 377, 813
MboII GAAGA 5 cut(s) 80, 308, 370, 520, 623
MflI RGATCY 1 cut(s) 377
MluCI AATT 6 cut(s) 425, 723, 850, 856, 875, 880
MlyI GAGTC 2 cut(s) 20, 308
MmeI TCCRAC 1 cut(s) 141
MseI TTAA 3 cut(s) 318, 456, 878
MspA1I CMGCKG 2 cut(s) 579, 588
MspI CCGG 4 cut(s) 415, 548, 653, 667
MspR9I CCNGG 1 cut(s) 415
MwoI GCNNNNNNNGC 2 cut(s) 585, 658
NciI CCSGG 1 cut(s) 415
NdeII GATC 3 cut(s) 304, 377, 813
NlaIII CATG 4 cut(s) 188, 230, 267, 680
NmuCI GTSAC 3 cut(s) 124, 350, 794
NspI RCATGY 2 cut(s) 230, 680
PaeI GCATGC 1 cut(s) 680
PciI ACATGT 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 804
PfeI GAWTC 1 cut(s) 82
PflFI GACNNNGTC 1 cut(s) 572
PkrI GCNGC 4 cut(s) 105, 587, 590, 690
PleI GAGTC 2 cut(s) 19, 307
PpsI GAGTC 2 cut(s) 19, 307
PscI ACATGT 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 377
PsyI GACNNNGTC 1 cut(s) 572
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SaqAI TTAA 3 cut(s) 318, 456, 878
SatI GCNGC 4 cut(s) 104, 586, 589, 689
Sau3AI GATC 3 cut(s) 304, 377, 813
SchI GAGTC 2 cut(s) 20, 308
ScrFI CCNGG 1 cut(s) 415
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SphI GCATGC 1 cut(s) 680
Sse9I AATT 6 cut(s) 425, 723, 850, 856, 875, 880
SsiI CCGC 5 cut(s) 543, 579, 588, 591, 640
SspMI CTAG 3 cut(s) 293, 432, 555
StyD4I CCNGG 1 cut(s) 413
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 347, 574
TasI AATT 6 cut(s) 425, 723, 850, 856, 875, 880
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 318, 456, 878
Tru9I TTAA 3 cut(s) 318, 456, 878
TscAI CASTG 2 cut(s) 352, 528
TseFI GTSAC 3 cut(s) 124, 350, 794
TseI GCWGC 3 cut(s) 103, 585, 688
Tsp45I GTSAC 3 cut(s) 124, 350, 794
TspDTI ATGAA 4 cut(s) 252, 752, 777, 849
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 2 cut(s) 352, 528
Tth111I GACNNNGTC 1 cut(s) 572
XapI RAATTY 2 cut(s) 856, 880
XceI RCATGY 2 cut(s) 230, 680
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 3 cut(s) 293, 432, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.