pycom16g04130
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0010335
Physical Location & Seq
Reverse (-)
2548094 .. 2549864
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g04130.1

Sequence Viewer

Length: 1134 bp
ATGGAGTGCACAAAGGAAATGCAGGCTTCTGCAAAGTTGGGTTTCCGTGAGTATGTCAAGGCTTTGGAGGAGGAGAGGCATAAGATTCAAGTTTTTCAGAGGGAGCTCCCTCTCTGCTTGGAGCTTGTCACCCAAGCTATTGAGAGGTGCAAGCAGCAGATTTCAGATACAACCGCAGATTACCTGCATGGACAATCTGAGTGTTCTGAGCAGACTTCAAGTGAGGGGCATGTTTTTGAGGAATTCATTCCATTAAAACGGATTTCATCTTCAGATAGTGATGAGGATGAAGTTCGAGAGTCTCAGGAGGCTAAGGACAATGAGAAGGATGATAAGATTGCCGGAGATGATAGGAAAAAACCAGACTGGCTTAGATCTGTACAGCTTTGGAATACAACCCCAGATGCACCACTCAAAGAGGAATTGCCTAGAAAGGCTTTAGTGATGGAGGTGAAGAGAAATGGGGGTGCTTTTCAGCCTTTCCAAAGGGAAAAAAGCATTGGAAAGACAAATGGACCGGTGGCTAAAGAACCTTATTCGGCTCCGGCTACTAGTTCCACCACGGACACCGCGAGTGGAGGCAGTGGTGGGAGCAACAAGAAAGAAGAGAAAGATGGACAGGGTCAGAGGAAACAAAGGCGAAACTGGTCCCCGGAGTTGCACCGTCGGTTCTTGCATGCTCTTCAACAGCTTGGTGGTTCACATGCTGCTACACCAAAACAAATTAGAGTGTTAAAGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTGCAGAAATATCGTTTACATACTCGAAGACCAACTCCAACAATGCACGGCAACAGTAACAGCAGCGCGCCAGCACCGCAATTTGTGGTTGTGGGAGGCATTTGGGTGCCACCCCAGGAGTACGCAGCAATGGCAGCAACCACTGCTTCCGGGGAGGCAGCCAATGGAATATATGCACCTTTGGCTTCAACTCCTCCTGCTGTCACACAGGTCTCACCACCAATCCAAAGACCACGGCCAAAGCAACCCAAACCCTTTCATTCAGACGAAGGGGTCAGCCACAGCGAAGGCCGCGGTCACTCCAATTCGACTGCTACGTCATCCTCCACTCACACCCCTGCTTCCCCTGTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

378

Amino Acids

41.53

Weight (kDa)

8.22

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 15 - 54 1.1e-14 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 213 - 264 3.4e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1049, 1093
Acc36I ACCTGC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 883
AccII CGCG 3 cut(s) 572, 845, 1071
AciI CCGC 5 cut(s) 174, 570, 854, 1069, 1071
AcoI YGGCCR 1 cut(s) 1013
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 2 cut(s) 381, 899
AgeI ACCGGT 1 cut(s) 517
AgsI TTSAA 4 cut(s) 89, 219, 686, 966
AhlI ACTAGT 1 cut(s) 551
AjnI CCWGG 1 cut(s) 891
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
AluBI AGCT 5 cut(s) 106, 124, 137, 385, 691
AluI AGCT 5 cut(s) 106, 124, 137, 385, 691
Alw21I GWGCWC 2 cut(s) 11, 108
Alw26I GTCTC 2 cut(s) 306, 994
Alw44I GTGCAC 1 cut(s) 7
AoxI GGCC 2 cut(s) 1013, 1066
ApaLI GTGCAC 1 cut(s) 7
ApeKI GCWGC 6 cut(s) 154, 707, 840, 902, 911, 935
ApoI RAATTY 1 cut(s) 242
AsiGI ACCGGT 1 cut(s) 517
Asp700I GAANNNNTTC 1 cut(s) 246
AspLEI GCGC 2 cut(s) 845, 847
AspS9I GGNCC 2 cut(s) 515, 648
AsuC2I CCSGG 2 cut(s) 653, 928
AsuHPI GGTGA 3 cut(s) 121, 463, 984
AvaII GGWCC 2 cut(s) 515, 648
BaeGI GKGCMC 1 cut(s) 11
BanI GGYRCC 1 cut(s) 883
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 811
Bbv12I GWGCWC 2 cut(s) 11, 108
BbvI GCAGC 6 cut(s) 166, 694, 852, 914, 923, 947
BccI CCATC 3 cut(s) 439, 608, 740
BceAI ACGGC 2 cut(s) 841, 1028
BcgI CGANNNNNNTGC 2 cut(s) 770, 804
BciT130I CCWGG 1 cut(s) 893
BcnI CCSGG 2 cut(s) 653, 928
BcoDI GTCTC 2 cut(s) 306, 994
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 2 cut(s) 429, 552
BfuAI ACCTGC 1 cut(s) 192
BglII AGATCT 1 cut(s) 374
BisI GCNGC 7 cut(s) 155, 708, 841, 903, 912, 936, 1069
BlsI GCNGC 7 cut(s) 156, 709, 842, 904, 913, 937, 1070
Bme1390I CCNGG 3 cut(s) 653, 893, 928
Bme18I GGWCC 2 cut(s) 515, 648
BmgT120I GGNCC 2 cut(s) 515, 648
BmiI GGNNCC 3 cut(s) 543, 650, 885
BmrFI CCNGG 3 cut(s) 653, 893, 928
BmsI GCATC 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 811
Bpu10I CCTNAGC 1 cut(s) 312
BpuMI CCSGG 2 cut(s) 653, 928
BsaI GGTCTC 1 cut(s) 994
BsaJI CCNNGG 6 cut(s) 561, 651, 891, 927, 1010, 1069
BsaWI WCCGGW 1 cut(s) 517
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 2 cut(s) 371, 650
Bse3DI GCAATG 1 cut(s) 912
BseBI CCWGG 1 cut(s) 893
BseDI CCNNGG 6 cut(s) 561, 651, 891, 927, 1010, 1069
BseGI GGATG 3 cut(s) 292, 334, 1097
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 3 cut(s) 189, 198, 317
BseNI ACTGG 2 cut(s) 371, 650
BsePI GCGCGC 1 cut(s) 843
BseRI GAGGAG 3 cut(s) 83, 86, 960
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 6 cut(s) 166, 694, 852, 914, 923, 947
Bsh1236I CGCG 3 cut(s) 572, 845, 1071
BshFI GGCC 2 cut(s) 1015, 1068
BshNI GGYRCC 1 cut(s) 883
BshTI ACCGGT 1 cut(s) 517
BsiHKAI GWGCWC 2 cut(s) 11, 108
BsiSI CCGG 5 cut(s) 342, 518, 545, 653, 927
BslFI GGGAC 1 cut(s) 634
BsmAI GTCTC 2 cut(s) 306, 994
BsmFI GGGAC 1 cut(s) 634
BsnI GGCC 2 cut(s) 1015, 1068
Bso31I GGTCTC 1 cut(s) 994
Bsp1286I GDGCHC 2 cut(s) 11, 108
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 1 cut(s) 374
BspACI CCGC 5 cut(s) 174, 570, 854, 1069, 1071
BspANI GGCC 2 cut(s) 1015, 1068
BspCNI CTCAG 3 cut(s) 190, 199, 316
BspFNI CGCG 3 cut(s) 572, 845, 1071
BspLI GGNNCC 3 cut(s) 543, 650, 885
BspMI ACCTGC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 687
BspT107I GGYRCC 1 cut(s) 883
BspTNI GGTCTC 1 cut(s) 994
BsrDI GCAATG 1 cut(s) 912
BsrFI RCCGGY 1 cut(s) 517
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 2 cut(s) 371, 650
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 6 cut(s) 561, 651, 891, 927, 1010, 1069
BssHII GCGCGC 1 cut(s) 843
BssMI GATC 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 893
Bst4CI ACNGT 2 cut(s) 665, 833
Bst6I CTCTTC 3 cut(s) 449, 600, 687
BstAPI GCANNNNNTGC 1 cut(s) 920
BstAUI TGTACA 1 cut(s) 379
BstC8I GCNNGC 5 cut(s) 24, 152, 678, 845, 849
BstDEI CTNAG 5 cut(s) 198, 207, 303, 312, 371
BstDSI CCRYGG 3 cut(s) 561, 1010, 1069
BstF5I GGATG 3 cut(s) 292, 334, 1097
BstFNI CGCG 3 cut(s) 572, 845, 1071
BstHHI GCGC 2 cut(s) 845, 847
BstKTI GATC 1 cut(s) 377
BstMAI GTCTC 2 cut(s) 306, 994
BstMBI GATC 1 cut(s) 374
BstMWI GCNNNNNNNGC 6 cut(s) 853, 908, 911, 920, 959, 1068
BstNI CCWGG 1 cut(s) 893
BstNSI RCATGY 3 cut(s) 233, 680, 707
BstSCI CCNGG 3 cut(s) 651, 891, 926
BstSLI GKGCMC 1 cut(s) 11
BstUI CGCG 3 cut(s) 572, 845, 1071
BstV1I GCAGC 6 cut(s) 166, 694, 852, 914, 923, 947
BstV2I GAAGAC 1 cut(s) 811
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BsuRI GGCC 2 cut(s) 1015, 1068
BtgI CCRYGG 3 cut(s) 561, 1010, 1069
BtsCI GGATG 3 cut(s) 292, 334, 1097
BtsI GCAGTG 2 cut(s) 589, 918
BtsIMutI CAGTG 2 cut(s) 589, 918
BveI ACCTGC 1 cut(s) 192
Cac8I GCNNGC 5 cut(s) 24, 152, 678, 845, 849
CfoI GCGC 2 cut(s) 845, 847
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 2 cut(s) 515, 648
Cfr42I CCGCGG 1 cut(s) 1072
Csp6I GTAC 2 cut(s) 380, 898
CspAI ACCGGT 1 cut(s) 517
CviAII CATG 4 cut(s) 188, 230, 677, 704
CviQI GTAC 2 cut(s) 380, 898
DdeI CTNAG 5 cut(s) 198, 207, 303, 312, 371
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
DrdI GACNNNNNNGTC 2 cut(s) 1049, 1093
DseDI GACNNNNNNGTC 2 cut(s) 1049, 1093
EaeI YGGCCR 1 cut(s) 1013
Eam1104I CTCTTC 3 cut(s) 449, 600, 687
EarI CTCTTC 3 cut(s) 449, 600, 687
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 994
Eco47I GGWCC 2 cut(s) 515, 648
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 891
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 4 cut(s) 191, 233, 680, 707
FaiI YATR 9 cut(s) 54, 81, 189, 231, 678, 705, 798, 949, 951
FaqI GGGAC 1 cut(s) 634
FatI CATG 4 cut(s) 187, 229, 676, 703
Fnu4HI GCNGC 7 cut(s) 155, 708, 841, 903, 912, 936, 1069
FokI GGATG 3 cut(s) 299, 341, 1084
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 7 cut(s) 155, 708, 841, 903, 912, 936, 1069
FspBI CTAG 2 cut(s) 429, 552
GlaI GCGC 2 cut(s) 844, 846
GluI GCNGC 7 cut(s) 155, 708, 841, 903, 912, 936, 1069
HaeIII GGCC 2 cut(s) 1015, 1068
HapII CCGG 5 cut(s) 342, 518, 545, 653, 927
HhaI GCGC 2 cut(s) 845, 847
Hin1II CATG 4 cut(s) 191, 233, 680, 707
Hin6I GCGC 2 cut(s) 843, 845
HinP1I GCGC 2 cut(s) 843, 845
HinfI GANTC 2 cut(s) 85, 299
HpaII CCGG 5 cut(s) 342, 518, 545, 653, 927
HphI GGTGA 3 cut(s) 121, 463, 984
Hpy166II GTNNAC 3 cut(s) 9, 701, 794
Hpy188I TCNGA 7 cut(s) 99, 166, 199, 208, 274, 627, 1042
Hpy188III TCNNGA 2 cut(s) 296, 305
Hpy8I GTNNAC 3 cut(s) 9, 701, 794
Hpy99I CGWCG 1 cut(s) 669
HpyAV CCTTC 4 cut(s) 319, 733, 1040, 1058
HpyCH4III ACNGT 2 cut(s) 665, 833
HpyCH4IV ACGT 1 cut(s) 1094
HpyF10VI GCNNNNNNNGC 6 cut(s) 853, 908, 911, 920, 959, 1068
HpyF3I CTNAG 5 cut(s) 198, 207, 303, 312, 371
HpySE526I ACGT 1 cut(s) 1094
Hsp92II CATG 4 cut(s) 191, 233, 680, 707
HspAI GCGC 2 cut(s) 843, 845
KspI CCGCGG 1 cut(s) 1072
Kzo9I GATC 1 cut(s) 374
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 5 cut(s) 103, 111, 121, 547, 591
Lsp1109I GCAGC 6 cut(s) 166, 694, 852, 914, 923, 947
LweI GCATC 1 cut(s) 394
MaeI CTAG 2 cut(s) 429, 552
MaeII ACGT 1 cut(s) 1094
MaeIII GTNAC 4 cut(s) 127, 833, 979, 1073
MalI GATC 1 cut(s) 376
MboI GATC 1 cut(s) 374
MboII GAAGA 5 cut(s) 261, 466, 617, 674, 816
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 2 cut(s) 11, 108
MluCI AATT 5 cut(s) 242, 422, 723, 857, 1081
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 839
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 2 cut(s) 254, 734
MslI CAYNNNNRTG 1 cut(s) 881
MspA1I CMGCKG 1 cut(s) 1071
MspI CCGG 5 cut(s) 342, 518, 545, 653, 927
MspR9I CCNGG 3 cut(s) 653, 893, 928
MvaI CCWGG 1 cut(s) 893
MvnI CGCG 3 cut(s) 572, 845, 1071
MwoI GCNNNNNNNGC 6 cut(s) 853, 908, 911, 920, 959, 1068
NciI CCSGG 2 cut(s) 653, 928
NdeII GATC 1 cut(s) 374
NlaIII CATG 4 cut(s) 191, 233, 680, 707
NlaIV GGNNCC 3 cut(s) 543, 650, 885
NmuCI GTSAC 3 cut(s) 127, 979, 1073
NspI RCATGY 3 cut(s) 233, 680, 707
PaeI GCATGC 1 cut(s) 680
PauI GCGCGC 1 cut(s) 843
PciSI GCTCTTC 1 cut(s) 687
PcsI WCGNNNNNNNCGW 2 cut(s) 569, 1091
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 85
PflFI GACNNNGTC 1 cut(s) 621
PinAI ACCGGT 1 cut(s) 517
PkrI GCNGC 7 cut(s) 156, 709, 842, 904, 913, 937, 1070
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 891
PspGI CCWGG 1 cut(s) 891
PspN4I GGNNCC 3 cut(s) 543, 650, 885
PspPI GGNCC 2 cut(s) 515, 648
PsuI RGATCY 1 cut(s) 374
PsyI GACNNNGTC 1 cut(s) 621
PteI GCGCGC 1 cut(s) 843
RsaI GTAC 2 cut(s) 381, 899
RsaNI GTAC 2 cut(s) 380, 898
RseI CAYNNNNRTG 1 cut(s) 881
SacI GAGCTC 1 cut(s) 108
SacII CCGCGG 1 cut(s) 1072
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 2 cut(s) 254, 734
SatI GCNGC 7 cut(s) 155, 708, 841, 903, 912, 936, 1069
Sau3AI GATC 1 cut(s) 374
Sau96I GGNCC 2 cut(s) 515, 648
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 3 cut(s) 653, 893, 928
SduI GDGCHC 2 cut(s) 11, 108
SfaNI GCATC 1 cut(s) 394
Sfr303I CCGCGG 1 cut(s) 1072
SgrBI CCGCGG 1 cut(s) 1072
SinI GGWCC 2 cut(s) 515, 648
SmiMI CAYNNNNRTG 1 cut(s) 881
SpeI ACTAGT 1 cut(s) 551
SphI GCATGC 1 cut(s) 680
Sse9I AATT 5 cut(s) 242, 422, 723, 857, 1081
SsiI CCGC 5 cut(s) 174, 570, 854, 1069, 1071
SspMI CTAG 2 cut(s) 429, 552
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 3 cut(s) 651, 891, 926
TaaI ACNGT 2 cut(s) 665, 833
TaiI ACGT 1 cut(s) 1097
TaqI TCGA 3 cut(s) 295, 802, 1085
TasI AATT 5 cut(s) 242, 422, 723, 857, 1081
TatI WGTACW 1 cut(s) 379
TauI GCSGC 1 cut(s) 1071
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 254, 734
Tru9I TTAA 2 cut(s) 254, 734
TscAI CASTG 2 cut(s) 589, 925
TseFI GTSAC 3 cut(s) 127, 979, 1073
TseI GCWGC 6 cut(s) 154, 707, 840, 902, 911, 935
Tsp45I GTSAC 3 cut(s) 127, 979, 1073
TspDTI ATGAA 5 cut(s) 235, 255, 303, 777, 1025
TspGWI ACGGA 3 cut(s) 35, 274, 578
TspRI CASTG 2 cut(s) 589, 925
Tth111I GACNNNGTC 1 cut(s) 621
VneI GTGCAC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 515, 648
XapI RAATTY 1 cut(s) 242
XceI RCATGY 3 cut(s) 233, 680, 707
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 2 cut(s) 429, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.