Rorug04G0288800
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010335
Physical Location & Seq
Reverse (-)
46211371 .. 46212154
784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0288800.1

Sequence Viewer

Length: 318 bp
ATGAGGACCATACTTGTCATATGCGCTATTGGCTTTGTGTTGATGGTGTCATCTCTGCAAGCCGATGCTAAACGGTTTGTTTTGAATGACCGTCACTTGGTTCAAGTTAAGAATGAGCCAACTCTTGCTAGTGGCGGTGCAAAAGATCAGTCTCAGTCTCAACCCCGGACCACAAACAAGGGTAGCAGCAACAGCGATGCTAAATATGATGATCTTGCCGACGATGATGCAAACGAGACTTATGGTAAGCATGGACATGGCTCTTCCGAAAGTGACTCTCACCGTTATTTTACCGACGATACATTCAGGCCCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

105

Amino Acids

11.57

Weight (kDa)

5.88

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 2 cut(s) 85, 104
Alw26I GTCTC 3 cut(s) 156, 162, 230
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 186
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 6, 168, 309
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 2 cut(s) 6, 168
BbvI GCAGC 1 cut(s) 198
BccI CCATC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 3 cut(s) 156, 162, 230
BfaI CTAG 1 cut(s) 129
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 2 cut(s) 6, 168
BmgT120I GGNCC 3 cut(s) 6, 168, 309
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 3 cut(s) 55, 187, 217
BpuMI CCSGG 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 198
BshFI GGCC 1 cut(s) 310
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 3 cut(s) 156, 162, 230
BsnI GGCC 1 cut(s) 310
Bsp143I GATC 2 cut(s) 145, 211
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 2 cut(s) 145, 211
Bst4CI ACNGT 3 cut(s) 75, 92, 284
Bst6I CTCTTC 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 2 cut(s) 148, 214
BstMAI GTCTC 3 cut(s) 156, 162, 230
BstMBI GATC 2 cut(s) 145, 211
BstMWI GCNNNNNNNGC 2 cut(s) 30, 192
BstSCI CCNGG 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 310
BtgZI GCGATG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 60
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 6, 168, 309
CviAII CATG 2 cut(s) 251, 257
CviJI RGCY 5 cut(s) 33, 62, 118, 261, 310
CviKI_1 RGCY 5 cut(s) 33, 62, 118, 261, 310
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 147, 213
DpnII GATC 2 cut(s) 145, 211
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 6, 168
EcoO109I RGGNCCY 1 cut(s) 309
FaeI CATG 2 cut(s) 254, 260
FaiI YATR 7 cut(s) 11, 20, 22, 207, 243, 252, 258
FatI CATG 2 cut(s) 250, 256
FauNDI CATATG 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 1 cut(s) 129
GlaI GCGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 166
HhaI GCGC 1 cut(s) 26
Hin1II CATG 2 cut(s) 254, 260
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 1 cut(s) 275
HpaII CCGG 1 cut(s) 166
HphI GGTGA 1 cut(s) 272
Hpy188I TCNGA 1 cut(s) 268
Hpy99I CGWCG 2 cut(s) 224, 299
HpyCH4III ACNGT 3 cut(s) 75, 92, 284
HpyCH4V TGCA 3 cut(s) 58, 140, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 192
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 2 cut(s) 254, 260
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 2 cut(s) 145, 211
LguI GCTCTTC 1 cut(s) 268
LpnPI CCDG 2 cut(s) 179, 292
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 3 cut(s) 55, 187, 217
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 92, 272
MalI GATC 2 cut(s) 147, 213
MboI GATC 2 cut(s) 145, 211
MboII GAAGA 1 cut(s) 255
MlyI GAGTC 1 cut(s) 269
MseI TTAA 2 cut(s) 108, 316
MslI CAYNNNNRTG 1 cut(s) 255
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 30, 192
NciI CCSGG 1 cut(s) 166
NdeI CATATG 1 cut(s) 20
NdeII GATC 2 cut(s) 145, 211
NlaIII CATG 2 cut(s) 254, 260
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 2 cut(s) 92, 272
PciSI GCTCTTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 3 cut(s) 6, 168, 309
RseI CAYNNNNRTG 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 268
SaqAI TTAA 2 cut(s) 108, 316
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 2 cut(s) 145, 211
Sau96I GGNCC 3 cut(s) 6, 168, 309
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 166
SfaNI GCATC 3 cut(s) 55, 187, 217
SinI GGWCC 2 cut(s) 6, 168
SmiMI CAYNNNNRTG 1 cut(s) 255
SsiI CCGC 1 cut(s) 135
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 3 cut(s) 75, 92, 284
Tru1I TTAA 2 cut(s) 108, 316
Tru9I TTAA 2 cut(s) 108, 316
TseFI GTSAC 2 cut(s) 92, 272
TseI GCWGC 1 cut(s) 186
Tsp45I GTSAC 2 cut(s) 92, 272
VpaK11BI GGWCC 2 cut(s) 6, 168
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.