RLG00000006565
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010335
Physical Location & Seq
Forward (+)
8549424 .. 8551306
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006565

Sequence Viewer

Length: 1176 bp
ATGCTAATAGAGTCTACAGAGGAAATGCAGGGTTCAAAGATGATTTTGTATGTGAAAGCCTTGGAGGAAGAGAGGCAAAAGATTCAAGTTTTCCAAAGAGAGCTGCCTCTCTGCTTGGAGCTTGTCACTCAAGCTATTGAGAGGTGTAAGCAGGAGCTGTCGGATAACAGCATAGAGTACAGGCATGGGCAATCCGAGTGTTCGGAGCAGACTTCAAGTGAGGGACATGTGTTTGAGGAGTTTATACCATTGAAAAGGAGTTCATGTTCTGATAGTGATAATGATGAGGAGCTACAAGAGTCTGATCATCAGCAGATTAAGATTGATGACAAGGATAAGAGTAACAGTGGTGACAAGAAGAAATCAGACTGGCTTAGATCTGTTCAGCTCTGGAATACGACCCCAGATTTACCGCAGAAAGAGGAATTGCCTAGAAAGGCTTTAGTGGTGGAGGTTAAGAGAAATGGGGGTGCTTTTCAGCCTTTCCAAAGGGAGAAAGGCATTGGGAAGACTAATGGGGCAGTGGCGAAGTCGCCTGCTTCGGCTCCGGCCACTAGCTCAACCGCTGACACCGTCAGCGGTGGCAGCGGCGGTGGAAACAGCAAGAAGGAAGATAAGGAGGGGCAGAGAAAACAGAGGCGGAACTGGTCGCCGGAGTTGCATCGCCGGTTCTTGCATGCCCTTCAACAGCTTGGGGGCTCGCACACTGCTACACCTAAGCAAATTAGAGAGCTAATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGAAATATCGTCTACACACTCGAAGGCCAACTCCAACAATCCATAACAACAACAACAACAGCAATGCACAAGCACCACAATTTGTGGTTGTGGGAGGCATTTGGGTGCCACCCCAAGACTACAATGCAGCAGTCGCAGCTGCAAACACAGCTTCAGGCGAAGCAGCCAGGGTTGCTGTTGCAGCCAATGGAATATATGCACCAGTGGCTTCAACACCTTCTACTGTCACACAGGTGTCACCATCAGCGATGCACAGACCGCGACCAAAGAAACCAGAGCCCTCTTCTCATTCAGAAGAAAGAGCCAGCCATAGCGGTGAAGGTCGCGGTCACTCCAACTCCACGGCTACATCACCCTCCTCCACTCACACCCCTGCCTCCCCTCCTGTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

392

Amino Acids

42.89

Weight (kDa)

7.73

Isoelectric Point (pI)

61.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 10 - 53 3e-14 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 213 - 264 2.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 886
AccI GTMKAC 2 cut(s) 14, 793
AccII CGCG 2 cut(s) 1042, 1107
AciI CCGC 9 cut(s) 413, 564, 579, 588, 591, 640, 1040, 1095, 1107
AcoI YGGCCR 1 cut(s) 549
AcuI CTGAAG 1 cut(s) 918
AfaI GTAC 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 6 cut(s) 36, 86, 216, 253, 686, 993
AjnI CCWGG 1 cut(s) 947
AleI CACNNNNGTG 1 cut(s) 1013
AloI GAACNNNNNNTCC 2 cut(s) 250, 282
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 2 cut(s) 549, 806
ApeKI GCWGC 7 cut(s) 103, 585, 908, 917, 920, 944, 962
AsuHPI GGTGA 4 cut(s) 362, 1011, 1109, 1125
BanI GGYRCC 1 cut(s) 886
BanII GRGCYC 2 cut(s) 701, 1062
BbsI GAAGAC 1 cut(s) 515
BbvI GCAGC 7 cut(s) 90, 597, 907, 920, 929, 956, 974
BccI CCATC 2 cut(s) 740, 1030
BceAI ACGGC 1 cut(s) 1140
BciT130I CCWGG 1 cut(s) 949
BclI TGATCA 1 cut(s) 304
BfaI CTAG 2 cut(s) 432, 555
BfmI CTRYAG 1 cut(s) 15
BglII AGATCT 1 cut(s) 377
BisI GCNGC 8 cut(s) 104, 586, 589, 909, 918, 921, 945, 963
BlsI GCNGC 8 cut(s) 105, 587, 590, 910, 919, 922, 946, 964
Bme1390I CCNGG 1 cut(s) 949
BmiI GGNNCC 2 cut(s) 546, 888
BmrFI CCNGG 1 cut(s) 949
BmsI GCATC 2 cut(s) 670, 1020
BpiI GAAGAC 1 cut(s) 515
Bpu10I CCTNAGC 1 cut(s) 717
BpuEI CTTGAG 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 60, 948, 1122
BsaXI ACNNNNNCTCC 4 cut(s) 250, 280, 1103, 1133
Bse118I RCCGGY 1 cut(s) 666
Bse1I ACTGG 3 cut(s) 374, 650, 983
Bse3DI GCAATG 1 cut(s) 850
BseBI CCWGG 1 cut(s) 949
BseDI CCNNGG 3 cut(s) 60, 948, 1122
BseMI GCAATG 1 cut(s) 850
BseNI ACTGG 3 cut(s) 374, 650, 983
BseRI GAGGAG 3 cut(s) 251, 302, 1129
BseXI GCAGC 7 cut(s) 90, 597, 907, 920, 929, 956, 974
Bsh1236I CGCG 2 cut(s) 1042, 1107
BshFI GGCC 2 cut(s) 551, 808
BshNI GGYRCC 1 cut(s) 886
BsiSI CCGG 3 cut(s) 548, 653, 667
BslFI GGGAC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 2 cut(s) 551, 808
Bsp1286I GDGCHC 2 cut(s) 701, 1062
Bsp143I GATC 2 cut(s) 304, 377
BspACI CCGC 9 cut(s) 413, 564, 579, 588, 591, 640, 1040, 1095, 1107
BspANI GGCC 2 cut(s) 551, 808
BspFNI CGCG 2 cut(s) 1042, 1107
BspLI GGNNCC 2 cut(s) 546, 888
BspT107I GGYRCC 1 cut(s) 886
BsrDI GCAATG 1 cut(s) 850
BsrFI RCCGGY 1 cut(s) 666
BsrI ACTGG 3 cut(s) 374, 650, 983
BssAI RCCGGY 1 cut(s) 666
BssECI CCNNGG 3 cut(s) 60, 948, 1122
BssMI GATC 2 cut(s) 304, 377
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 949
Bst4CI ACNGT 3 cut(s) 347, 574, 1006
Bst6I CTCTTC 2 cut(s) 63, 1069
BstC8I GCNNGC 4 cut(s) 537, 678, 701, 1087
BstDEI CTNAG 2 cut(s) 374, 717
BstDSI CCRYGG 1 cut(s) 1122
BstFNI CGCG 2 cut(s) 1042, 1107
BstKTI GATC 2 cut(s) 307, 380
BstMBI GATC 2 cut(s) 304, 377
BstMWI GCNNNNNNNGC 9 cut(s) 585, 658, 914, 917, 929, 953, 962, 986, 1039
BstNI CCWGG 1 cut(s) 949
BstNSI RCATGY 2 cut(s) 230, 680
BstSCI CCNGG 1 cut(s) 947
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 2 cut(s) 1042, 1107
BstV1I GCAGC 7 cut(s) 90, 597, 907, 920, 929, 956, 974
BstV2I GAAGAC 1 cut(s) 515
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 2 cut(s) 551, 808
BtgI CCRYGG 1 cut(s) 1122
BtgZI GCGATG 2 cut(s) 647, 1043
BtsI GCAGTG 2 cut(s) 528, 705
BtsIMutI CAGTG 4 cut(s) 352, 528, 705, 990
Cac8I GCNNGC 4 cut(s) 537, 678, 701, 1087
CaiI CAGNNNCTG 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 666
Csp6I GTAC 1 cut(s) 178
CviAII CATG 4 cut(s) 185, 227, 264, 677
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 374, 717
DpnI GATC 2 cut(s) 306, 379
DpnII GATC 2 cut(s) 304, 377
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 2 cut(s) 63, 1069
EarI CTCTTC 2 cut(s) 63, 1069
EciI GGCGGA 1 cut(s) 655
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 2 cut(s) 701, 1062
Eco57I CTGAAG 1 cut(s) 918
EcoRII CCWGG 1 cut(s) 947
EcoT14I CCWWGG 1 cut(s) 60
EcoT38I GRGCYC 2 cut(s) 701, 1062
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 188, 230, 267, 680
FaqI GGGAC 1 cut(s) 237
FatI CATG 4 cut(s) 184, 226, 263, 676
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 2 cut(s) 14, 793
Fnu4HI GCNGC 8 cut(s) 104, 586, 589, 909, 918, 921, 945, 963
FriOI GRGCYC 2 cut(s) 701, 1062
Fsp4HI GCNGC 8 cut(s) 104, 586, 589, 909, 918, 921, 945, 963
FspBI CTAG 2 cut(s) 432, 555
GluI GCNGC 8 cut(s) 104, 586, 589, 909, 918, 921, 945, 963
HaeIII GGCC 2 cut(s) 551, 808
HapII CCGG 3 cut(s) 548, 653, 667
Hin1II CATG 4 cut(s) 188, 230, 267, 680
HinfI GANTC 3 cut(s) 11, 82, 299
HpaII CCGG 3 cut(s) 548, 653, 667
HphI GGTGA 4 cut(s) 362, 1011, 1109, 1125
Hpy166II GTNNAC 2 cut(s) 15, 794
Hpy188I TCNGA 7 cut(s) 163, 196, 205, 271, 304, 367, 1075
Hpy188III TCNNGA 1 cut(s) 391
Hpy8I GTNNAC 2 cut(s) 15, 794
HpyAV CCTTC 6 cut(s) 601, 692, 733, 798, 1008, 1094
HpyCH4III ACNGT 3 cut(s) 347, 574, 1006
HpyCH4V TGCA 9 cut(s) 28, 661, 676, 848, 908, 923, 962, 980, 1033
HpyF10VI GCNNNNNNNGC 9 cut(s) 585, 658, 914, 917, 929, 953, 962, 986, 1039
HpyF3I CTNAG 2 cut(s) 374, 717
Hsp92II CATG 4 cut(s) 188, 230, 267, 680
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 304, 377
LmnI GCTCC 5 cut(s) 118, 154, 205, 289, 550
Lsp1109I GCAGC 7 cut(s) 90, 597, 907, 920, 929, 956, 974
LweI GCATC 2 cut(s) 670, 1020
MaeI CTAG 2 cut(s) 432, 555
MaeIII GTNAC 6 cut(s) 124, 341, 350, 1006, 1017, 1109
MalI GATC 2 cut(s) 306, 379
MboI GATC 2 cut(s) 304, 377
MboII GAAGA 6 cut(s) 80, 370, 520, 623, 1056, 1088
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 2 cut(s) 701, 1062
MluCI AATT 3 cut(s) 425, 723, 860
MlyI GAGTC 2 cut(s) 20, 308
MmeI TCCRAC 3 cut(s) 141, 839, 1140
MseI TTAA 3 cut(s) 318, 456, 1174
MslI CAYNNNNRTG 3 cut(s) 884, 1013, 1095
MspA1I CMGCKG 4 cut(s) 566, 579, 588, 920
MspI CCGG 3 cut(s) 548, 653, 667
MspR9I CCNGG 1 cut(s) 949
MvaI CCWGG 1 cut(s) 949
MvnI CGCG 2 cut(s) 1042, 1107
MwoI GCNNNNNNNGC 9 cut(s) 585, 658, 914, 917, 929, 953, 962, 986, 1039
NdeII GATC 2 cut(s) 304, 377
NlaIII CATG 4 cut(s) 188, 230, 267, 680
NlaIV GGNNCC 2 cut(s) 546, 888
NmuCI GTSAC 5 cut(s) 124, 350, 1006, 1017, 1109
NspI RCATGY 2 cut(s) 230, 680
OliI CACNNNNGTG 1 cut(s) 1013
PaeI GCATGC 1 cut(s) 680
PciI ACATGT 1 cut(s) 226
PfeI GAWTC 1 cut(s) 82
PflFI GACNNNGTC 1 cut(s) 572
PkrI GCNGC 8 cut(s) 105, 587, 590, 910, 919, 922, 946, 964
PleI GAGTC 2 cut(s) 19, 307
PpsI GAGTC 2 cut(s) 19, 307
PscI ACATGT 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 947
PspGI CCWGG 1 cut(s) 947
PspN4I GGNNCC 2 cut(s) 546, 888
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 377
PsyI GACNNNGTC 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 3 cut(s) 884, 1013, 1095
SaqAI TTAA 3 cut(s) 318, 456, 1174
SatI GCNGC 8 cut(s) 104, 586, 589, 909, 918, 921, 945, 963
Sau3AI GATC 2 cut(s) 304, 377
SchI GAGTC 2 cut(s) 20, 308
ScrFI CCNGG 1 cut(s) 949
SduI GDGCHC 2 cut(s) 701, 1062
SfaNI GCATC 2 cut(s) 670, 1020
SfcI CTRYAG 1 cut(s) 15
SmiMI CAYNNNNRTG 3 cut(s) 884, 1013, 1095
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SphI GCATGC 1 cut(s) 680
Sse9I AATT 3 cut(s) 425, 723, 860
SsiI CCGC 9 cut(s) 413, 564, 579, 588, 591, 640, 1040, 1095, 1107
SspMI CTAG 2 cut(s) 432, 555
StyD4I CCNGG 1 cut(s) 947
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 347, 574, 1006
TaqI TCGA 1 cut(s) 802
TasI AATT 3 cut(s) 425, 723, 860
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 318, 456, 1174
Tru9I TTAA 3 cut(s) 318, 456, 1174
TscAI CASTG 4 cut(s) 352, 528, 712, 990
TseFI GTSAC 5 cut(s) 124, 350, 1006, 1017, 1109
TseI GCWGC 7 cut(s) 103, 585, 908, 917, 920, 944, 962
Tsp45I GTSAC 5 cut(s) 124, 350, 1006, 1017, 1109
TspDTI ATGAA 3 cut(s) 252, 752, 777
TspRI CASTG 4 cut(s) 352, 528, 712, 990
Tth111I GACNNNGTC 1 cut(s) 572
XceI RCATGY 2 cut(s) 230, 680
XmiI GTMKAC 2 cut(s) 14, 793
XspI CTAG 2 cut(s) 432, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.