Prupe.1G306300_v2.0.a1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010335
Physical Location & Seq
Forward (+)
29939830 .. 29944129
4300 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G306300.1

Sequence Viewer

Length: 1152 bp
ATGGAGTCTACAGAGCAAATGCAGGCTTCAAGGTTGGGTTTCCGTGACTATGTCAAGGCCTTAGAGGAAGAGAGGCATAAGATTCAAGTTTTTCAGCGTGAGCTCCCTCTCTGCTTGGAGCTTGTCACTCAAGCTATTGAGAGGTGTAAGCAACAGCTTTCGGATACAACCACGGACTACATGCATGGACAGTCCGAGTGCTCGGAACAAACTTCAAGTGAGGGGCATGTGTTTGAGGAATTCATTCCCTTGAAAAGGACTTCCTCTTCTGATAGTGATGATGATGAGGTGCAAGAGTCTCAGGAGCCCAAGACCAATGACAAGGATAAGACTAATGGTGACAAGATAAAATCAGACTGGCTTAGATCTGCCCAGCTCTGGAATACAACCCCAGATCCACCCCTTAAAGATGAATTGCCTAGAAAGGCCTTAGTGATGGAGGTCAAGAGAAATGGGGGGGCTTTTCAGCCTTTCCAAAGGGAGAAAAGCGTTGGGAAGACTAATAGGCCAGTGGCTAAAGTGCCTGCTTCTGCTCCGGCTACTAGTTCAACCACAGACACCGTCAGTGGAGGCAGTGGTGAAAGCCACAAGAAAGAAGAAAAAGATGGACAGGGTCAGAGGAAACAAAGGCGGAATTGGTCACCGGAGTTGCATCGCCGGTTCTTGCATGCTCTTCAACAGCTTGGTGGTTCACATGCTGCTACACCCAAGCAAATTAGAGAGTTAATGAAGGTTGATGGGCTCACAAACGATGAAGTCAAAAGCCATTTACAGAAATATCGTTTGCACACTCGAAGACCAACTCCAACAATGCACAACAACAACAACAGCGACAACAACACACAAGCACCACAGTTTTTGGTTGTGGGAGGTATCTGGGTGCCACCCCAGGACTATGCAGCAGTAGCAGCAACCACAGCTTCAGGGGAAGCTACCAGGGTTGCTGCAGCCAATGGAATATATGCACCTGTGGCTACATCTCCGTCTACCGTCACACCAGTGTCACCACCATCCTTAATGCAAAGACCACGACCGAAGAGACCTGAGTCCTCTCATTCAGATGAGAGGGTCAGCCACAGCGAAGGCCGCGGTCATTGCAATTCTACCGCTACATCATCCTCCACTCACACCACTGCTTCCCCTGTGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

384

Amino Acids

42.45

Weight (kDa)

7.77

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1150
AccB1I GGYRCC 1 cut(s) 880
AccI GTMKAC 2 cut(s) 8, 986
AccII CGCG 1 cut(s) 1089
AciI CCGC 4 cut(s) 631, 1087, 1089, 1107
AclWI GGATC 1 cut(s) 389
AcsI RAATTY 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 906
AfiI CCNNNNNNNGG 2 cut(s) 255, 378
AgsI TTSAA 6 cut(s) 30, 86, 216, 253, 549, 677
AhlI ACTAGT 1 cut(s) 542
AjnI CCWGG 2 cut(s) 888, 935
AleI CACNNNNGTG 1 cut(s) 998
AluBI AGCT 8 cut(s) 103, 121, 134, 157, 376, 682, 920, 932
AluI AGCT 8 cut(s) 103, 121, 134, 157, 376, 682, 920, 932
Alw21I GWGCWC 2 cut(s) 105, 203
Alw26I GTCTC 2 cut(s) 303, 1033
AlwI GGATC 1 cut(s) 389
AoxI GGCC 4 cut(s) 57, 426, 506, 1084
ApeKI GCWGC 5 cut(s) 698, 899, 908, 944, 947
ApoI RAATTY 1 cut(s) 239
Asp700I GAANNNNTTC 1 cut(s) 243
AsuHPI GGTGA 4 cut(s) 350, 590, 633, 996
BanI GGYRCC 1 cut(s) 880
BanII GRGCYC 3 cut(s) 105, 309, 744
BbsI GAAGAC 2 cut(s) 503, 802
Bbv12I GWGCWC 2 cut(s) 105, 203
BbvI GCAGC 5 cut(s) 685, 911, 920, 931, 959
BccI CCATC 4 cut(s) 430, 599, 731, 1018
BciT130I CCWGG 2 cut(s) 890, 937
BciVI GTATCC 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 303, 1033
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 2 cut(s) 420, 543
BfmI CTRYAG 2 cut(s) 9, 945
BfuI GTATCC 1 cut(s) 157
BglII AGATCT 1 cut(s) 365
BisI GCNGC 6 cut(s) 699, 900, 909, 945, 948, 1087
BlsI GCNGC 6 cut(s) 700, 901, 910, 946, 949, 1088
Bme1390I CCNGG 2 cut(s) 890, 937
BmiI GGNNCC 2 cut(s) 306, 882
BmrFI CCNGG 2 cut(s) 890, 937
BmsI GCATC 1 cut(s) 661
BoxI GACNNNNGTC 1 cut(s) 1045
BpiI GAAGAC 2 cut(s) 503, 802
BpuEI CTTGAG 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 1033
BsaJI CCNNGG 4 cut(s) 171, 888, 936, 1087
BsaWI WCCGGW 1 cut(s) 643
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 378
Bse118I RCCGGY 1 cut(s) 657
Bse1I ACTGG 3 cut(s) 362, 509, 998
Bse3DI GCAATG 1 cut(s) 1093
BseBI CCWGG 2 cut(s) 890, 937
BseDI CCNNGG 4 cut(s) 171, 888, 936, 1087
BseGI GGATG 2 cut(s) 1010, 1115
BseLI CCNNNNNNNGG 2 cut(s) 255, 378
BseMI GCAATG 1 cut(s) 1093
BseMII CTCAG 2 cut(s) 314, 1035
BseNI ACTGG 3 cut(s) 362, 509, 998
BseXI GCAGC 5 cut(s) 685, 911, 920, 931, 959
BseYI CCCAGC 1 cut(s) 372
Bsh1236I CGCG 1 cut(s) 1089
Bsh1285I CGRYCG 1 cut(s) 1034
BshFI GGCC 4 cut(s) 59, 428, 508, 1086
BshNI GGYRCC 1 cut(s) 880
BsiEI CGRYCG 1 cut(s) 1034
BsiHKAI GWGCWC 2 cut(s) 105, 203
BsiSI CCGG 3 cut(s) 536, 644, 658
BslI CCNNNNNNNGG 2 cut(s) 255, 378
BsmAI GTCTC 2 cut(s) 303, 1033
BsnI GGCC 4 cut(s) 59, 428, 508, 1086
Bso31I GGTCTC 1 cut(s) 1033
Bsp1286I GDGCHC 4 cut(s) 105, 203, 309, 744
Bsp143I GATC 2 cut(s) 365, 394
BspACI CCGC 4 cut(s) 631, 1087, 1089, 1107
BspANI GGCC 4 cut(s) 59, 428, 508, 1086
BspCNI CTCAG 2 cut(s) 313, 1036
BspFNI CGCG 1 cut(s) 1089
BspLI GGNNCC 2 cut(s) 306, 882
BspMAI CTGCAG 1 cut(s) 949
BspPI GGATC 1 cut(s) 389
BspQI GCTCTTC 1 cut(s) 678
BspT107I GGYRCC 1 cut(s) 880
BspTNI GGTCTC 1 cut(s) 1033
BsrDI GCAATG 1 cut(s) 1093
BsrFI RCCGGY 1 cut(s) 657
BsrI ACTGG 3 cut(s) 362, 509, 998
BssAI RCCGGY 1 cut(s) 657
BssECI CCNNGG 4 cut(s) 171, 888, 936, 1087
BssMI GATC 2 cut(s) 365, 394
Bst2UI CCWGG 2 cut(s) 890, 937
Bst4CI ACNGT 4 cut(s) 192, 562, 855, 991
Bst6I CTCTTC 4 cut(s) 63, 271, 678, 1031
BstC8I GCNNGC 3 cut(s) 24, 525, 669
BstDEI CTNAG 5 cut(s) 61, 300, 362, 430, 1044
BstDSI CCRYGG 2 cut(s) 171, 1087
BstEII GGTNACC 1 cut(s) 639
BstENI CCTNNNNNAGG 1 cut(s) 253
BstF5I GGATG 2 cut(s) 1010, 1115
BstFNI CGCG 1 cut(s) 1089
BstKTI GATC 2 cut(s) 368, 397
BstMAI GTCTC 2 cut(s) 303, 1033
BstMBI GATC 2 cut(s) 365, 394
BstMCI CGRYCG 1 cut(s) 1034
BstMWI GCNNNNNNNGC 6 cut(s) 905, 908, 917, 971, 1086, 1095
BstNI CCWGG 2 cut(s) 890, 937
BstNSI RCATGY 4 cut(s) 184, 230, 671, 698
BstPAI GACNNNNGTC 1 cut(s) 1045
BstPI GGTNACC 1 cut(s) 639
BstSCI CCNGG 2 cut(s) 888, 935
BstSFI CTRYAG 2 cut(s) 9, 945
BstUI CGCG 1 cut(s) 1089
BstV1I GCAGC 5 cut(s) 685, 911, 920, 931, 959
BstV2I GAAGAC 2 cut(s) 503, 802
BstX2I RGATCY 2 cut(s) 365, 394
BstYI RGATCY 2 cut(s) 365, 394
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 4 cut(s) 59, 428, 508, 1086
BtgI CCRYGG 2 cut(s) 171, 1087
BtgZI GCGATG 1 cut(s) 638
BtsCI GGATG 2 cut(s) 1010, 1115
BtsI GCAGTG 2 cut(s) 580, 1131
BtsIMutI CAGTG 5 cut(s) 516, 571, 580, 1005, 1131
Cac8I GCNNGC 3 cut(s) 24, 525, 669
Cfr10I RCCGGY 1 cut(s) 657
Cfr42I CCGCGG 1 cut(s) 1090
CspCI CAANNNNNGTGG 2 cut(s) 840, 875
CviAII CATG 5 cut(s) 181, 185, 227, 668, 695
DdeI CTNAG 5 cut(s) 61, 300, 362, 430, 1044
DpnI GATC 2 cut(s) 367, 396
DpnII GATC 2 cut(s) 365, 394
Eam1104I CTCTTC 4 cut(s) 63, 271, 678, 1031
EarI CTCTTC 4 cut(s) 63, 271, 678, 1031
EciI GGCGGA 1 cut(s) 646
Ecl136II GAGCTC 1 cut(s) 103
Eco147I AGGCCT 2 cut(s) 59, 428
Eco24I GRGCYC 3 cut(s) 105, 309, 744
Eco31I GGTCTC 1 cut(s) 1033
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 906
Eco91I GGTNACC 1 cut(s) 639
EcoICRI GAGCTC 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 639
EcoRI GAATTC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 888, 935
EcoT22I ATGCAT 1 cut(s) 186
EcoT38I GRGCYC 3 cut(s) 105, 309, 744
FaeI CATG 5 cut(s) 184, 188, 230, 671, 698
FatI CATG 5 cut(s) 180, 184, 226, 667, 694
FblI GTMKAC 2 cut(s) 8, 986
Fnu4HI GCNGC 6 cut(s) 699, 900, 909, 945, 948, 1087
FokI GGATG 2 cut(s) 997, 1102
FriOI GRGCYC 3 cut(s) 105, 309, 744
Fsp4HI GCNGC 6 cut(s) 699, 900, 909, 945, 948, 1087
FspBI CTAG 2 cut(s) 420, 543
GluI GCNGC 6 cut(s) 699, 900, 909, 945, 948, 1087
GsaI CCCAGC 1 cut(s) 376
HaeIII GGCC 4 cut(s) 59, 428, 508, 1086
HapII CCGG 3 cut(s) 536, 644, 658
Hin1II CATG 5 cut(s) 184, 188, 230, 671, 698
HinfI GANTC 4 cut(s) 5, 82, 296, 1046
HpaII CCGG 3 cut(s) 536, 644, 658
HphI GGTGA 4 cut(s) 350, 590, 633, 996
Hpy166II GTNNAC 3 cut(s) 9, 692, 987
Hpy188I TCNGA 7 cut(s) 163, 196, 205, 271, 355, 618, 1060
Hpy188III TCNNGA 3 cut(s) 302, 379, 445
Hpy8I GTNNAC 3 cut(s) 9, 692, 987
HpyAV CCTTC 2 cut(s) 724, 1076
HpyCH4III ACNGT 4 cut(s) 192, 562, 855, 991
HpyF10VI GCNNNNNNNGC 6 cut(s) 905, 908, 917, 971, 1086, 1095
HpyF3I CTNAG 5 cut(s) 61, 300, 362, 430, 1044
Hsp92II CATG 5 cut(s) 184, 188, 230, 671, 698
KspI CCGCGG 1 cut(s) 1090
Kzo9I GATC 2 cut(s) 365, 394
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 4 cut(s) 108, 118, 304, 538
Lsp1109I GCAGC 5 cut(s) 685, 911, 920, 931, 959
LweI GCATC 1 cut(s) 661
MaeI CTAG 2 cut(s) 420, 543
MaeIII GTNAC 6 cut(s) 44, 124, 338, 639, 991, 1002
MalI GATC 2 cut(s) 367, 396
MboI GATC 2 cut(s) 365, 394
MboII GAAGA 7 cut(s) 80, 258, 508, 608, 665, 807, 1048
MflI RGATCY 2 cut(s) 365, 394
MhlI GDGCHC 4 cut(s) 105, 203, 309, 744
MluCI AATT 5 cut(s) 239, 413, 634, 714, 1099
MlyI GAGTC 3 cut(s) 14, 305, 1055
MmeI TCCRAC 1 cut(s) 830
Mph1103I ATGCAT 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 3 cut(s) 405, 725, 1016
MslI CAYNNNNRTG 2 cut(s) 998, 1059
MspA1I CMGCKG 1 cut(s) 1089
MspI CCGG 3 cut(s) 536, 644, 658
MspR9I CCNGG 2 cut(s) 890, 937
MvaI CCWGG 2 cut(s) 890, 937
MvnI CGCG 1 cut(s) 1089
MwoI GCNNNNNNNGC 6 cut(s) 905, 908, 917, 971, 1086, 1095
NdeII GATC 2 cut(s) 365, 394
NlaIII CATG 5 cut(s) 184, 188, 230, 671, 698
NlaIV GGNNCC 2 cut(s) 306, 882
NmuCI GTSAC 6 cut(s) 44, 124, 338, 639, 991, 1002
NsiI ATGCAT 1 cut(s) 186
NspI RCATGY 4 cut(s) 184, 230, 671, 698
OliI CACNNNNGTG 1 cut(s) 998
PaeI GCATGC 1 cut(s) 671
PceI AGGCCT 2 cut(s) 59, 428
PciSI GCTCTTC 1 cut(s) 678
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 82
PflFI GACNNNGTC 3 cut(s) 50, 560, 612
PkrI GCNGC 6 cut(s) 700, 901, 910, 946, 949, 1088
PleI GAGTC 3 cut(s) 13, 304, 1054
PpsI GAGTC 3 cut(s) 13, 304, 1054
PshAI GACNNNNGTC 1 cut(s) 1045
PsiI TTATAA 1 cut(s) 1150
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 888, 935
PspEI GGTNACC 1 cut(s) 639
PspFI CCCAGC 1 cut(s) 372
PspGI CCWGG 2 cut(s) 888, 935
PspN4I GGNNCC 2 cut(s) 306, 882
PstI CTGCAG 1 cut(s) 949
PsuI RGATCY 2 cut(s) 365, 394
PsyI GACNNNGTC 3 cut(s) 50, 560, 612
RseI CAYNNNNRTG 2 cut(s) 998, 1059
SacI GAGCTC 1 cut(s) 105
SacII CCGCGG 1 cut(s) 1090
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 3 cut(s) 405, 725, 1016
SatI GCNGC 6 cut(s) 699, 900, 909, 945, 948, 1087
Sau3AI GATC 2 cut(s) 365, 394
SchI GAGTC 3 cut(s) 14, 305, 1055
ScrFI CCNGG 2 cut(s) 890, 937
SduI GDGCHC 4 cut(s) 105, 203, 309, 744
SfaNI GCATC 1 cut(s) 661
SfcI CTRYAG 2 cut(s) 9, 945
Sfr303I CCGCGG 1 cut(s) 1090
SgrBI CCGCGG 1 cut(s) 1090
SmiMI CAYNNNNRTG 2 cut(s) 998, 1059
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SpeI ACTAGT 1 cut(s) 542
SphI GCATGC 1 cut(s) 671
Sse9I AATT 5 cut(s) 239, 413, 634, 714, 1099
SseBI AGGCCT 2 cut(s) 59, 428
SsiI CCGC 4 cut(s) 631, 1087, 1089, 1107
SspMI CTAG 2 cut(s) 420, 543
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 2 cut(s) 59, 428
StyD4I CCNGG 2 cut(s) 888, 935
TaaI ACNGT 4 cut(s) 192, 562, 855, 991
TaqI TCGA 1 cut(s) 793
TaqII GACCGA 1 cut(s) 1048
TasI AATT 5 cut(s) 239, 413, 634, 714, 1099
TauI GCSGC 1 cut(s) 1089
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 405, 725, 1016
Tru9I TTAA 3 cut(s) 405, 725, 1016
TscAI CASTG 5 cut(s) 516, 571, 580, 1005, 1138
TseFI GTSAC 6 cut(s) 44, 124, 338, 639, 991, 1002
TseI GCWGC 5 cut(s) 698, 899, 908, 944, 947
Tsp45I GTSAC 6 cut(s) 44, 124, 338, 639, 991, 1002
TspDTI ATGAA 4 cut(s) 232, 426, 743, 768
TspGWI ACGGA 3 cut(s) 32, 188, 972
TspRI CASTG 5 cut(s) 516, 571, 580, 1005, 1138
Tth111I GACNNNGTC 3 cut(s) 50, 560, 612
XagI CCTNNNNNAGG 1 cut(s) 253
XapI RAATTY 1 cut(s) 239
XceI RCATGY 4 cut(s) 184, 230, 671, 698
XmiI GTMKAC 2 cut(s) 8, 986
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 2 cut(s) 420, 543
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.