Rmu_sc0000051.1_g000016
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000051.1
OG0010335
Physical Location & Seq
Reverse (-)
66830 .. 67852
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000051.1_g000016.1.cds

Sequence Viewer

Length: 564 bp
atggctgcggcgtccggaatccagcaatgcatatacctattgattcatcgccggttcttgcatgcccttcagcagcttggtggctcgcacactgctacacctaagcaaattagagagctaatgaaggttgatgggcttactaatgatgaagtcaaaagccatttacagaaatatcgtctacacactcgaaggccaactccaacaatccataacaacaacaacaacaacagcaacgcacaagcaccacaatttgtggttgtgggaggcatttgggtgccaccccaagactacaatgcagcagtcgcagctgcaaacacagctccaggcgaagcagccagggttgttgctgcagccaatggaatatatgcaccagtggcttcaacaccttctactgtcacacaggtgtcaccatccgcaatgcatagaccgcgaccaaagaaaccagagccctcttctcattcggaagaaagagccagccatagcggtgaaggtcgcggtcactccaactccacggctacatcaccctcctccactcacacccctgcctcccctcctgtgtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

187

Amino Acids

19.9

Weight (kDa)

9.85

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 274
AccI GTMKAC 1 cut(s) 178
AccII CGCG 2 cut(s) 430, 495
AccIII TCCGGA 1 cut(s) 14
AciI CCGC 5 cut(s) 8, 414, 428, 483, 495
AcuI CTGAAG 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 11
AgsI TTSAA 1 cut(s) 381
AjnI CCWGG 2 cut(s) 322, 335
AleI CACNNNNGTG 1 cut(s) 401
AluBI AGCT 4 cut(s) 76, 118, 308, 320
AluI AGCT 4 cut(s) 76, 118, 308, 320
Aor13HI TCCGGA 1 cut(s) 14
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 8 cut(s) 5, 73, 296, 305, 308, 332, 347, 350
AsuHPI GGTGA 3 cut(s) 399, 497, 513
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 450
BbvI GCAGC 7 cut(s) 85, 295, 308, 317, 334, 344, 362
BccI CCATC 2 cut(s) 125, 418
BceAI ACGGC 1 cut(s) 528
BciT130I CCWGG 2 cut(s) 324, 337
BfmI CTRYAG 1 cut(s) 348
BisI GCNGC 9 cut(s) 6, 9, 74, 297, 306, 309, 333, 348, 351
BlsI GCNGC 9 cut(s) 7, 10, 75, 298, 307, 310, 334, 349, 352
Bme1390I CCNGG 2 cut(s) 324, 337
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 2 cut(s) 324, 337
BpmI CTGGAG 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 336, 510
BsaWI WCCGGW 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 371
Bse3DI GCAATG 2 cut(s) 32, 423
BseAI TCCGGA 1 cut(s) 14
BseBI CCWGG 2 cut(s) 324, 337
BseDI CCNNGG 2 cut(s) 336, 510
BseGI GGATG 1 cut(s) 410
BseMI GCAATG 2 cut(s) 32, 423
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 1 cut(s) 517
BseXI GCAGC 7 cut(s) 85, 295, 308, 317, 334, 344, 362
Bsh1236I CGCG 2 cut(s) 430, 495
BshFI GGCC 1 cut(s) 193
BshNI GGYRCC 1 cut(s) 274
BsiSI CCGG 2 cut(s) 15, 52
BsnI GGCC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 450
Bsp13I TCCGGA 1 cut(s) 14
BspACI CCGC 5 cut(s) 8, 414, 428, 483, 495
BspANI GGCC 1 cut(s) 193
BspEI TCCGGA 1 cut(s) 14
BspFNI CGCG 2 cut(s) 430, 495
BspLI GGNNCC 1 cut(s) 276
BspMAI CTGCAG 1 cut(s) 352
BspT107I GGYRCC 1 cut(s) 274
BsrDI GCAATG 2 cut(s) 32, 423
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 1 cut(s) 371
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 336, 510
BssNI GRCGYC 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 324, 337
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 457
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 63, 86, 475
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 1 cut(s) 410
BstFNI CGCG 2 cut(s) 430, 495
BstMWI GCNNNNNNNGC 5 cut(s) 302, 305, 317, 374, 427
BstNI CCWGG 2 cut(s) 324, 337
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 2 cut(s) 322, 335
BstSFI CTRYAG 1 cut(s) 348
BstUI CGCG 2 cut(s) 430, 495
BstV1I GCAGC 7 cut(s) 85, 295, 308, 317, 334, 344, 362
BsuRI GGCC 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 510
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 410
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 90, 378
Cac8I GCNNGC 3 cut(s) 63, 86, 475
Cfr10I RCCGGY 1 cut(s) 51
CviAII CATG 1 cut(s) 62
DdeI CTNAG 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 322, 335
EcoT22I ATGCAT 2 cut(s) 32, 423
EcoT38I GRGCYC 1 cut(s) 450
FaeI CATG 1 cut(s) 65
FaiI YATR 8 cut(s) 32, 34, 63, 210, 364, 366, 423, 480
FatI CATG 1 cut(s) 61
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 9 cut(s) 6, 9, 74, 297, 306, 309, 333, 348, 351
FokI GGATG 1 cut(s) 397
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 9 cut(s) 6, 9, 74, 297, 306, 309, 333, 348, 351
GluI GCNGC 9 cut(s) 6, 9, 74, 297, 306, 309, 333, 348, 351
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 1 cut(s) 193
HapII CCGG 2 cut(s) 15, 52
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 1 cut(s) 65
HinfI GANTC 2 cut(s) 18, 43
HpaII CCGG 2 cut(s) 15, 52
HphI GGTGA 3 cut(s) 399, 497, 513
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 463
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 5 cut(s) 77, 118, 183, 396, 482
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4V TGCA 7 cut(s) 30, 61, 296, 311, 350, 368, 421
HpyF10VI GCNNNNNNNGC 5 cut(s) 302, 305, 317, 374, 427
HpyF3I CTNAG 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 1 cut(s) 65
Kpn2I TCCGGA 1 cut(s) 14
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 7 cut(s) 85, 295, 308, 317, 334, 344, 362
MaeIII GTNAC 3 cut(s) 394, 405, 497
MboII GAAGA 2 cut(s) 444, 476
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 2 cut(s) 108, 248
MmeI TCCRAC 2 cut(s) 224, 528
MnlI CCTC 6 cut(s) 257, 460, 535, 538, 556, 561
Mph1103I ATGCAT 2 cut(s) 32, 423
MroI TCCGGA 1 cut(s) 14
MseI TTAA 1 cut(s) 562
MslI CAYNNNNRTG 3 cut(s) 272, 401, 483
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 2 cut(s) 15, 52
MspR9I CCNGG 2 cut(s) 324, 337
MvaI CCWGG 2 cut(s) 324, 337
MvnI CGCG 2 cut(s) 430, 495
MwoI GCNNNNNNNGC 5 cut(s) 302, 305, 317, 374, 427
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 3 cut(s) 394, 405, 497
NsiI ATGCAT 2 cut(s) 32, 423
NspI RCATGY 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 401
PaeI GCATGC 1 cut(s) 65
PfeI GAWTC 2 cut(s) 18, 43
PkrI GCNGC 9 cut(s) 7, 10, 75, 298, 307, 310, 334, 349, 352
Psp6I CCWGG 2 cut(s) 322, 335
PspGI CCWGG 2 cut(s) 322, 335
PspN4I GGNNCC 1 cut(s) 276
PstI CTGCAG 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 308
RseI CAYNNNNRTG 3 cut(s) 272, 401, 483
SaqAI TTAA 1 cut(s) 562
SatI GCNGC 9 cut(s) 6, 9, 74, 297, 306, 309, 333, 348, 351
ScrFI CCNGG 2 cut(s) 324, 337
SduI GDGCHC 1 cut(s) 450
SfcI CTRYAG 1 cut(s) 348
SmiMI CAYNNNNRTG 3 cut(s) 272, 401, 483
SphI GCATGC 1 cut(s) 65
Sse9I AATT 2 cut(s) 108, 248
SsiI CCGC 5 cut(s) 8, 414, 428, 483, 495
StyD4I CCNGG 2 cut(s) 322, 335
TaaI ACNGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 187
TasI AATT 2 cut(s) 108, 248
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 18, 43
Tru1I TTAA 1 cut(s) 562
Tru9I TTAA 1 cut(s) 562
TscAI CASTG 2 cut(s) 97, 378
TseFI GTSAC 3 cut(s) 394, 405, 497
TseI GCWGC 8 cut(s) 5, 73, 296, 305, 308, 332, 347, 350
Tsp45I GTSAC 3 cut(s) 394, 405, 497
TspDTI ATGAA 3 cut(s) 35, 137, 162
TspRI CASTG 2 cut(s) 97, 378
XceI RCATGY 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 178
Zsp2I ATGCAT 2 cut(s) 32, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.