RchiOBHm_Chr4g0435701
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010335
Physical Location & Seq
Reverse (-)
59153343 .. 59155889
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40412

Sequence Viewer

Length: 1182 bp
ATGCTAATAGAGTCTACAGAGGAAATGCAGGGTTCAAAGATGAGTTTGTATGTGAAAGCCTTGGAGGAAGAGAGGCAAAAGATTCAAGTTTTCCAAAGAGAGCTGCCTCTCTGCTTGGAGCTTGTCACTCAAGCTATTGAGAGGTGTAAGCAGGAGCTGTCGGATAATAGCATAGAGTACAGGCATGGGCAATCCGAGTGTTCGGAGCAGACTTCAAGTGAGGGACATGTGTTTGAGGAGTTTATACCATTGAAAAGGAGTTCATGCTCTGATAGTGATAATGATGAGGAGCTAGAAGAGTCTGATCATCAGCAGATTAAGATTGATGACAAGGATAAGAGTAACAGTGGTGACAAGAAGAAATCAGACTGGCTTAGATCTGTTCAGCTTTGGAATACGACCCCAGATTTACCCCGGAAAGAGGAATTGCCTAGAAAGGCTTTAGTGGTGGAGGTTAAGAGAAATGGGGGTGCTTTTCAGCCTTTCCAAAGGGAGAAAGGCATTGGGAAGACTAATGGGGCAGTGGCGAAGTCGCCTGCTTCCGCTCCGGCCACTAGCTCAACTGCTGACACCGTCAGCGGTGGCAGCGGCGGTGGAAACAGCAAGAAGGAAGATAAGGAGGGGCAGAGGAAACAGAGGCGGAACTGGTCGCCGGAGTTGCATCGCCGGTTCTTGCATGCCCTTCAGCAGCTTGGTGGCTCGCATACTGCTACACCTAAGCAAATTAGAGAGCTAATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGAAATATCGTCTACACACTCGAAGGCCAACTCCAACAATCCATAACAACAACAACAACAACAACAGCAACGCACAAGCTCCACAATTTGTGGTTGTGGGAGGCATTTGGGTGCCACCCCAAGACTACAATGCAGCAGTCGCAGCTGCAAACACAGCTTCAGGCGAAGCAGCCAGGGTTGTTGCTGCAGCCAATGGAATATATGCACCAGTGGCTTCAACACCTTCTACTGTCACACAGGTGTCACCATCAGCAATGCATAGACCGCGACCAAAGAAACCAGAGCCCTCTTCTCATTCGGAAGAAAGAGCCAGCCATAGCGGTGAAGGTCGCGGTCACTCCAACTCCACGGCTACATCACCCTCCTCCACTCACACCCCTGCCTCCCCTCCTGTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

393

Amino Acids

43.12

Weight (kDa)

7.73

Isoelectric Point (pI)

61.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 8 - 53 5.6e-15 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 213 - 264 2.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 892
AccBSI CCGCTC 1 cut(s) 545
AccI GTMKAC 2 cut(s) 14, 793
AccII CGCG 2 cut(s) 1048, 1113
AciI CCGC 8 cut(s) 543, 579, 588, 591, 640, 1046, 1101, 1113
AcoI YGGCCR 1 cut(s) 549
AcuI CTGAAG 2 cut(s) 668, 924
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 421
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 5 cut(s) 36, 86, 216, 253, 999
AjnI CCWGG 1 cut(s) 953
AleI CACNNNNGTG 1 cut(s) 1019
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 2 cut(s) 549, 806
ApeKI GCWGC 9 cut(s) 103, 585, 688, 914, 923, 926, 950, 965, 968
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 4 cut(s) 362, 1017, 1115, 1131
BanI GGYRCC 1 cut(s) 892
BanII GRGCYC 1 cut(s) 1068
BbsI GAAGAC 1 cut(s) 515
BbvI GCAGC 9 cut(s) 90, 597, 700, 913, 926, 935, 952, 962, 980
BccI CCATC 2 cut(s) 740, 1036
BceAI ACGGC 1 cut(s) 1146
BciT130I CCWGG 1 cut(s) 955
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 1 cut(s) 415
BfaI CTAG 3 cut(s) 293, 432, 555
BfmI CTRYAG 2 cut(s) 15, 966
BglII AGATCT 1 cut(s) 377
Bme1390I CCNGG 2 cut(s) 415, 955
BmiI GGNNCC 1 cut(s) 894
BmrFI CCNGG 2 cut(s) 415, 955
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 515
Bpu10I CCTNAGC 1 cut(s) 717
BpuEI CTTGAG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 415
BsaJI CCNNGG 4 cut(s) 60, 413, 954, 1128
BsaXI ACNNNNNCTCC 2 cut(s) 1109, 1139
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 666
Bse1I ACTGG 3 cut(s) 374, 650, 989
Bse3DI GCAATG 1 cut(s) 1041
BseBI CCWGG 1 cut(s) 955
BseDI CCNNGG 4 cut(s) 60, 413, 954, 1128
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 1041
BseNI ACTGG 3 cut(s) 374, 650, 989
BseRI GAGGAG 3 cut(s) 251, 302, 1135
BseXI GCAGC 9 cut(s) 90, 597, 700, 913, 926, 935, 952, 962, 980
Bsh1236I CGCG 2 cut(s) 1048, 1113
BshFI GGCC 2 cut(s) 551, 808
BshNI GGYRCC 1 cut(s) 892
BsiSI CCGG 4 cut(s) 415, 548, 653, 667
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 421
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 2 cut(s) 551, 808
Bsp1286I GDGCHC 1 cut(s) 1068
Bsp143I GATC 2 cut(s) 304, 377
BspACI CCGC 8 cut(s) 543, 579, 588, 591, 640, 1046, 1101, 1113
BspANI GGCC 2 cut(s) 551, 808
BspFNI CGCG 2 cut(s) 1048, 1113
BspLI GGNNCC 1 cut(s) 894
BspMAI CTGCAG 1 cut(s) 970
BspT107I GGYRCC 1 cut(s) 892
BsrBI CCGCTC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 1041
BsrFI RCCGGY 1 cut(s) 666
BsrI ACTGG 3 cut(s) 374, 650, 989
BssAI RCCGGY 1 cut(s) 666
BssECI CCNNGG 4 cut(s) 60, 413, 954, 1128
BssMI GATC 2 cut(s) 304, 377
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 955
Bst4CI ACNGT 3 cut(s) 347, 574, 1012
Bst6I CTCTTC 3 cut(s) 63, 291, 1075
BstC8I GCNNGC 4 cut(s) 537, 678, 701, 1093
BstDEI CTNAG 2 cut(s) 374, 717
BstDSI CCRYGG 1 cut(s) 1128
BstFNI CGCG 2 cut(s) 1048, 1113
BstKTI GATC 2 cut(s) 307, 380
BstMBI GATC 2 cut(s) 304, 377
BstMWI GCNNNNNNNGC 7 cut(s) 585, 658, 920, 923, 935, 992, 1045
BstNI CCWGG 1 cut(s) 955
BstNSI RCATGY 2 cut(s) 230, 680
BstSCI CCNGG 2 cut(s) 413, 953
BstSFI CTRYAG 2 cut(s) 15, 966
BstUI CGCG 2 cut(s) 1048, 1113
BstV1I GCAGC 9 cut(s) 90, 597, 700, 913, 926, 935, 952, 962, 980
BstV2I GAAGAC 1 cut(s) 515
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 2 cut(s) 551, 808
BtgI CCRYGG 1 cut(s) 1128
BtgZI GCGATG 1 cut(s) 647
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 3 cut(s) 352, 528, 996
Cac8I GCNNGC 4 cut(s) 537, 678, 701, 1093
CaiI CAGNNNCTG 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 666
Csp6I GTAC 1 cut(s) 178
CviAII CATG 4 cut(s) 185, 227, 264, 677
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 374, 717
DpnI GATC 2 cut(s) 306, 379
DpnII GATC 2 cut(s) 304, 377
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 3 cut(s) 63, 291, 1075
EarI CTCTTC 3 cut(s) 63, 291, 1075
EciI GGCGGA 1 cut(s) 655
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 1068
Eco57I CTGAAG 2 cut(s) 668, 924
EcoRII CCWGG 1 cut(s) 953
EcoT14I CCWWGG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 1041
EcoT38I GRGCYC 1 cut(s) 1068
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 188, 230, 267, 680
FaqI GGGAC 1 cut(s) 237
FatI CATG 4 cut(s) 184, 226, 263, 676
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 2 cut(s) 14, 793
FriOI GRGCYC 1 cut(s) 1068
FspBI CTAG 3 cut(s) 293, 432, 555
HaeIII GGCC 2 cut(s) 551, 808
HapII CCGG 4 cut(s) 415, 548, 653, 667
Hin1II CATG 4 cut(s) 188, 230, 267, 680
HinfI GANTC 3 cut(s) 11, 82, 299
HpaII CCGG 4 cut(s) 415, 548, 653, 667
HphI GGTGA 4 cut(s) 362, 1017, 1115, 1131
Hpy166II GTNNAC 2 cut(s) 15, 794
Hpy188I TCNGA 7 cut(s) 163, 196, 205, 271, 304, 367, 1081
Hpy8I GTNNAC 2 cut(s) 15, 794
HpyAV CCTTC 6 cut(s) 601, 692, 733, 798, 1014, 1100
HpyCH4III ACNGT 3 cut(s) 347, 574, 1012
HpyCH4V TGCA 8 cut(s) 28, 661, 676, 914, 929, 968, 986, 1039
HpyF10VI GCNNNNNNNGC 7 cut(s) 585, 658, 920, 923, 935, 992, 1045
HpyF3I CTNAG 2 cut(s) 374, 717
Hsp92II CATG 4 cut(s) 188, 230, 267, 680
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 304, 377
LmnI GCTCC 6 cut(s) 118, 154, 205, 289, 550, 865
Lsp1109I GCAGC 9 cut(s) 90, 597, 700, 913, 926, 935, 952, 962, 980
LweI GCATC 1 cut(s) 670
MaeI CTAG 3 cut(s) 293, 432, 555
MaeIII GTNAC 6 cut(s) 124, 341, 350, 1012, 1023, 1115
MalI GATC 2 cut(s) 306, 379
MbiI CCGCTC 1 cut(s) 545
MboI GATC 2 cut(s) 304, 377
MboII GAAGA 7 cut(s) 80, 308, 370, 520, 623, 1062, 1094
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 1068
MluCI AATT 3 cut(s) 425, 723, 866
MlyI GAGTC 2 cut(s) 20, 308
MmeI TCCRAC 3 cut(s) 141, 839, 1146
Mph1103I ATGCAT 1 cut(s) 1041
MseI TTAA 3 cut(s) 318, 456, 1180
MslI CAYNNNNRTG 3 cut(s) 890, 1019, 1101
MspA1I CMGCKG 3 cut(s) 579, 588, 926
MspI CCGG 4 cut(s) 415, 548, 653, 667
MspR9I CCNGG 2 cut(s) 415, 955
MvaI CCWGG 1 cut(s) 955
MvnI CGCG 2 cut(s) 1048, 1113
MwoI GCNNNNNNNGC 7 cut(s) 585, 658, 920, 923, 935, 992, 1045
NciI CCSGG 1 cut(s) 415
NdeII GATC 2 cut(s) 304, 377
NlaIII CATG 4 cut(s) 188, 230, 267, 680
NlaIV GGNNCC 1 cut(s) 894
NmuCI GTSAC 5 cut(s) 124, 350, 1012, 1023, 1115
NsiI ATGCAT 1 cut(s) 1041
NspI RCATGY 2 cut(s) 230, 680
OliI CACNNNNGTG 1 cut(s) 1019
PaeI GCATGC 1 cut(s) 680
PciI ACATGT 1 cut(s) 226
PfeI GAWTC 1 cut(s) 82
PflFI GACNNNGTC 1 cut(s) 572
PleI GAGTC 2 cut(s) 19, 307
PpsI GAGTC 2 cut(s) 19, 307
PscI ACATGT 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 953
PspGI CCWGG 1 cut(s) 953
PspN4I GGNNCC 1 cut(s) 894
PstI CTGCAG 1 cut(s) 970
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 377
PsyI GACNNNGTC 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 3 cut(s) 890, 1019, 1101
SaqAI TTAA 3 cut(s) 318, 456, 1180
Sau3AI GATC 2 cut(s) 304, 377
SchI GAGTC 2 cut(s) 20, 308
ScrFI CCNGG 2 cut(s) 415, 955
SduI GDGCHC 1 cut(s) 1068
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 2 cut(s) 15, 966
SmiMI CAYNNNNRTG 3 cut(s) 890, 1019, 1101
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SphI GCATGC 1 cut(s) 680
Sse9I AATT 3 cut(s) 425, 723, 866
SsiI CCGC 8 cut(s) 543, 579, 588, 591, 640, 1046, 1101, 1113
SspMI CTAG 3 cut(s) 293, 432, 555
StyD4I CCNGG 2 cut(s) 413, 953
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 347, 574, 1012
TaqI TCGA 1 cut(s) 802
TasI AATT 3 cut(s) 425, 723, 866
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 318, 456, 1180
Tru9I TTAA 3 cut(s) 318, 456, 1180
TscAI CASTG 3 cut(s) 352, 528, 996
TseFI GTSAC 5 cut(s) 124, 350, 1012, 1023, 1115
TseI GCWGC 9 cut(s) 103, 585, 688, 914, 923, 926, 950, 965, 968
Tsp45I GTSAC 5 cut(s) 124, 350, 1012, 1023, 1115
TspDTI ATGAA 3 cut(s) 252, 752, 777
TspRI CASTG 3 cut(s) 352, 528, 996
Tth111I GACNNNGTC 1 cut(s) 572
XceI RCATGY 2 cut(s) 230, 680
XmiI GTMKAC 2 cut(s) 14, 793
XspI CTAG 3 cut(s) 293, 432, 555
Zsp2I ATGCAT 1 cut(s) 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.