Rmu_sc0012980.1_g000001
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012980.1
OG0010335
Physical Location & Seq
Forward (+)
1207 .. 3407
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012980.1_g000001.1.cds

Sequence Viewer

Length: 1332 bp
atgctaatagagtctacagaggaaatgcagggttcaaagatgagtttgtatgtgaaagccttggaggaagagaggcaaaagattcaagttttccaaagagagctgcctctctgcttggagcttgtcactcaagctattgagaggtgtaagcaggagctgtcggataatagcatagagtacaggcatgggcaatccgagtgttcggagcagacttcaagtgagggacatgtgtttgaggagtttataccattgaaaaggagttcatgctctgatagtgataatgatgaggagctagaagagtctgatcatcagcagattaagattgatgacaaggataagagtaacagtggtgacaagaagaaatcagactggcttagatctgttcagctttggaatacgaccccagatttaccccagaaagaggaattgcctagaaaggctttagtggtggaggttaagagaaatgggggtgcttttcagcctttccaaagggagaaaggcattgggaagactaatggggcagtggcgaagtcgcctgcttccgctccggccactagctcaaccgctgacaccgaattgcctagaaaggctttagtggtggaggttaagagaaatgggggtgcttttcagcctttccaaagggagaaaggcattgggaagactaatggggcagtggcgaagtcgcctgcttccgctccggccactagctcaaccgctgacaccgtcagcggcggcagcggcggtggaaacagcaagaaggaagataaggaggggcagaggaaacagaggcggaactggtcgccggagttgcatcgccggttcttgcatgcccttcagcagcttggtggctcgcacactgctacacctaagcaaattagagagctaatgaaggttgatgggcttactaatgatgaagtcaaaagccatttacagaaatatcgtctacacactcgaaggccaactccaacaatccataacaacaacatcaacaacaacagcaacgcacaagcaccacaatttgtggttgtgggaggcatttgggtgccaccccaagactacaatgcagcagtcgcagctgcaaacacagctccaggcgaagcagccagggttgttgctgcagccaatggaatatatgcaccagtggcttcaacaccttctactgtcacacaggtgtcaccatccgcaatgcatagaccgcgaccaaagaaaccagagccctcttctcattcggaagaaagagccagccatagcggtgaaggtcgcggtcactccaactccacggctacatcaccctcctccactcacacccctgcctcccctcctgtgtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

443

Amino Acids

48.23

Weight (kDa)

8.64

Isoelectric Point (pI)

60.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1042
AccBSI CCGCTC 2 cut(s) 545, 695
AccI GTMKAC 2 cut(s) 14, 943
AccII CGCG 2 cut(s) 1198, 1263
AcoI YGGCCR 2 cut(s) 549, 699
AcuI CTGAAG 1 cut(s) 818
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 421
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 5 cut(s) 36, 86, 216, 253, 1149
AjnI CCWGG 2 cut(s) 1090, 1103
AleI CACNNNNGTG 1 cut(s) 1169
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 3 cut(s) 549, 699, 956
ApeKI GCWGC 9 cut(s) 103, 735, 838, 1064, 1073, 1076, 1100, 1115, 1118
AsuHPI GGTGA 4 cut(s) 362, 1167, 1265, 1281
BanI GGYRCC 1 cut(s) 1042
BanII GRGCYC 1 cut(s) 1218
BbsI GAAGAC 2 cut(s) 515, 665
BbvI GCAGC 9 cut(s) 90, 747, 850, 1063, 1076, 1085, 1102, 1112, 1130
BccI CCATC 2 cut(s) 890, 1186
BceAI ACGGC 1 cut(s) 1296
BciT130I CCWGG 2 cut(s) 1092, 1105
BclI TGATCA 1 cut(s) 304
BfaI CTAG 5 cut(s) 293, 432, 555, 582, 705
BfmI CTRYAG 2 cut(s) 15, 1116
BglII AGATCT 1 cut(s) 377
Bme1390I CCNGG 2 cut(s) 1092, 1105
BmiI GGNNCC 1 cut(s) 1044
BmrFI CCNGG 2 cut(s) 1092, 1105
BmsI GCATC 1 cut(s) 820
BpiI GAAGAC 2 cut(s) 515, 665
BpmI CTGGAG 1 cut(s) 1074
Bpu10I CCTNAGC 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 60, 1104, 1278
BsaXI ACNNNNNCTCC 2 cut(s) 1259, 1289
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 816
Bse1I ACTGG 3 cut(s) 374, 800, 1139
Bse3DI GCAATG 1 cut(s) 1191
BseBI CCWGG 2 cut(s) 1092, 1105
BseDI CCNNGG 3 cut(s) 60, 1104, 1278
BseGI GGATG 1 cut(s) 1178
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 1191
BseNI ACTGG 3 cut(s) 374, 800, 1139
BseRI GAGGAG 3 cut(s) 251, 302, 1285
BseXI GCAGC 9 cut(s) 90, 747, 850, 1063, 1076, 1085, 1102, 1112, 1130
Bsh1236I CGCG 2 cut(s) 1198, 1263
BshFI GGCC 3 cut(s) 551, 701, 958
BshNI GGYRCC 1 cut(s) 1042
BsiSI CCGG 4 cut(s) 548, 698, 803, 817
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 421
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 3 cut(s) 551, 701, 958
Bsp1286I GDGCHC 1 cut(s) 1218
Bsp143I GATC 2 cut(s) 304, 377
BspANI GGCC 3 cut(s) 551, 701, 958
BspFNI CGCG 2 cut(s) 1198, 1263
BspLI GGNNCC 1 cut(s) 1044
BspMAI CTGCAG 1 cut(s) 1120
BspT107I GGYRCC 1 cut(s) 1042
BsrBI CCGCTC 2 cut(s) 545, 695
BsrDI GCAATG 1 cut(s) 1191
BsrFI RCCGGY 1 cut(s) 816
BsrI ACTGG 3 cut(s) 374, 800, 1139
BssAI RCCGGY 1 cut(s) 816
BssECI CCNNGG 3 cut(s) 60, 1104, 1278
BssMI GATC 2 cut(s) 304, 377
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 1092, 1105
Bst4CI ACNGT 3 cut(s) 347, 724, 1162
Bst6I CTCTTC 3 cut(s) 63, 291, 1225
BstC8I GCNNGC 5 cut(s) 537, 687, 828, 851, 1243
BstDEI CTNAG 2 cut(s) 374, 867
BstDSI CCRYGG 1 cut(s) 1278
BstF5I GGATG 1 cut(s) 1178
BstFNI CGCG 2 cut(s) 1198, 1263
BstKTI GATC 2 cut(s) 307, 380
BstMBI GATC 2 cut(s) 304, 377
BstMWI GCNNNNNNNGC 8 cut(s) 735, 738, 808, 1070, 1073, 1085, 1142, 1195
BstNI CCWGG 2 cut(s) 1092, 1105
BstNSI RCATGY 2 cut(s) 230, 830
BstSCI CCNGG 2 cut(s) 1090, 1103
BstSFI CTRYAG 2 cut(s) 15, 1116
BstUI CGCG 2 cut(s) 1198, 1263
BstV1I GCAGC 9 cut(s) 90, 747, 850, 1063, 1076, 1085, 1102, 1112, 1130
BstV2I GAAGAC 2 cut(s) 515, 665
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 3 cut(s) 551, 701, 958
BtgI CCRYGG 1 cut(s) 1278
BtgZI GCGATG 1 cut(s) 797
BtsCI GGATG 1 cut(s) 1178
BtsI GCAGTG 3 cut(s) 528, 678, 855
BtsIMutI CAGTG 5 cut(s) 352, 528, 678, 855, 1146
Cac8I GCNNGC 5 cut(s) 537, 687, 828, 851, 1243
CaiI CAGNNNCTG 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 816
Csp6I GTAC 1 cut(s) 178
CviAII CATG 4 cut(s) 185, 227, 264, 827
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 374, 867
DpnI GATC 2 cut(s) 306, 379
DpnII GATC 2 cut(s) 304, 377
EaeI YGGCCR 2 cut(s) 549, 699
Eam1104I CTCTTC 3 cut(s) 63, 291, 1225
EarI CTCTTC 3 cut(s) 63, 291, 1225
EciI GGCGGA 1 cut(s) 805
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 1218
Eco57I CTGAAG 1 cut(s) 818
EcoRII CCWGG 2 cut(s) 1090, 1103
EcoT14I CCWWGG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 1191
EcoT38I GRGCYC 1 cut(s) 1218
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 188, 230, 267, 830
FaqI GGGAC 1 cut(s) 237
FatI CATG 4 cut(s) 184, 226, 263, 826
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 2 cut(s) 14, 943
FokI GGATG 1 cut(s) 1165
FriOI GRGCYC 1 cut(s) 1218
FspBI CTAG 5 cut(s) 293, 432, 555, 582, 705
GsuI CTGGAG 1 cut(s) 1074
HaeIII GGCC 3 cut(s) 551, 701, 958
HapII CCGG 4 cut(s) 548, 698, 803, 817
Hin1II CATG 4 cut(s) 188, 230, 267, 830
HinfI GANTC 3 cut(s) 11, 82, 299
HpaII CCGG 4 cut(s) 548, 698, 803, 817
HphI GGTGA 4 cut(s) 362, 1167, 1265, 1281
Hpy166II GTNNAC 2 cut(s) 15, 944
Hpy188I TCNGA 7 cut(s) 163, 196, 205, 271, 304, 367, 1231
Hpy8I GTNNAC 2 cut(s) 15, 944
HpyAV CCTTC 6 cut(s) 751, 842, 883, 948, 1164, 1250
HpyCH4III ACNGT 3 cut(s) 347, 724, 1162
HpyCH4V TGCA 8 cut(s) 28, 811, 826, 1064, 1079, 1118, 1136, 1189
HpyF10VI GCNNNNNNNGC 8 cut(s) 735, 738, 808, 1070, 1073, 1085, 1142, 1195
HpyF3I CTNAG 2 cut(s) 374, 867
Hsp92II CATG 4 cut(s) 188, 230, 267, 830
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 304, 377
LmnI GCTCC 7 cut(s) 118, 154, 205, 289, 550, 700, 1093
Lsp1109I GCAGC 9 cut(s) 90, 747, 850, 1063, 1076, 1085, 1102, 1112, 1130
LweI GCATC 1 cut(s) 820
MaeI CTAG 5 cut(s) 293, 432, 555, 582, 705
MaeIII GTNAC 6 cut(s) 124, 341, 350, 1162, 1173, 1265
MalI GATC 2 cut(s) 306, 379
MbiI CCGCTC 2 cut(s) 545, 695
MboI GATC 2 cut(s) 304, 377
MboII GAAGA 8 cut(s) 80, 308, 370, 520, 670, 773, 1212, 1244
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 1218
MluCI AATT 4 cut(s) 425, 575, 873, 1016
MlyI GAGTC 2 cut(s) 20, 308
MmeI TCCRAC 3 cut(s) 141, 989, 1296
Mph1103I ATGCAT 1 cut(s) 1191
MseI TTAA 4 cut(s) 318, 456, 606, 1330
MslI CAYNNNNRTG 3 cut(s) 1040, 1169, 1251
MspA1I CMGCKG 5 cut(s) 566, 716, 729, 738, 1076
MspI CCGG 4 cut(s) 548, 698, 803, 817
MspR9I CCNGG 2 cut(s) 1092, 1105
MvaI CCWGG 2 cut(s) 1092, 1105
MvnI CGCG 2 cut(s) 1198, 1263
MwoI GCNNNNNNNGC 8 cut(s) 735, 738, 808, 1070, 1073, 1085, 1142, 1195
NdeII GATC 2 cut(s) 304, 377
NlaIII CATG 4 cut(s) 188, 230, 267, 830
NlaIV GGNNCC 1 cut(s) 1044
NmuCI GTSAC 5 cut(s) 124, 350, 1162, 1173, 1265
NsiI ATGCAT 1 cut(s) 1191
NspI RCATGY 2 cut(s) 230, 830
OliI CACNNNNGTG 1 cut(s) 1169
PaeI GCATGC 1 cut(s) 830
PciI ACATGT 1 cut(s) 226
PfeI GAWTC 1 cut(s) 82
PflFI GACNNNGTC 1 cut(s) 722
PleI GAGTC 2 cut(s) 19, 307
PpsI GAGTC 2 cut(s) 19, 307
PscI ACATGT 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 1090, 1103
PspGI CCWGG 2 cut(s) 1090, 1103
PspN4I GGNNCC 1 cut(s) 1044
PstI CTGCAG 1 cut(s) 1120
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 377
PsyI GACNNNGTC 1 cut(s) 722
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 3 cut(s) 1040, 1169, 1251
SaqAI TTAA 4 cut(s) 318, 456, 606, 1330
Sau3AI GATC 2 cut(s) 304, 377
SchI GAGTC 2 cut(s) 20, 308
ScrFI CCNGG 2 cut(s) 1092, 1105
SduI GDGCHC 1 cut(s) 1218
SfaNI GCATC 1 cut(s) 820
SfcI CTRYAG 2 cut(s) 15, 1116
SmiMI CAYNNNNRTG 3 cut(s) 1040, 1169, 1251
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SphI GCATGC 1 cut(s) 830
Sse9I AATT 4 cut(s) 425, 575, 873, 1016
SspMI CTAG 5 cut(s) 293, 432, 555, 582, 705
StyD4I CCNGG 2 cut(s) 1090, 1103
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 347, 724, 1162
TaqI TCGA 1 cut(s) 952
TasI AATT 4 cut(s) 425, 575, 873, 1016
TatI WGTACW 1 cut(s) 177
TauI GCSGC 3 cut(s) 732, 735, 741
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 4 cut(s) 318, 456, 606, 1330
Tru9I TTAA 4 cut(s) 318, 456, 606, 1330
TscAI CASTG 5 cut(s) 352, 528, 678, 862, 1146
TseFI GTSAC 5 cut(s) 124, 350, 1162, 1173, 1265
TseI GCWGC 9 cut(s) 103, 735, 838, 1064, 1073, 1076, 1100, 1115, 1118
Tsp45I GTSAC 5 cut(s) 124, 350, 1162, 1173, 1265
TspDTI ATGAA 3 cut(s) 252, 902, 927
TspRI CASTG 5 cut(s) 352, 528, 678, 862, 1146
Tth111I GACNNNGTC 1 cut(s) 722
XceI RCATGY 2 cut(s) 230, 830
XmiI GTMKAC 2 cut(s) 14, 943
XspI CTAG 5 cut(s) 293, 432, 555, 582, 705
Zsp2I ATGCAT 1 cut(s) 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.